{"id":"https://openalex.org/W1844490078","doi":"https://doi.org/10.1371/journal.pcbi.1004468","title":"Comprehensive Meta-analysis of Ontology Annotated 16S rRNA Profiles Identifies Beta Diversity Clusters of Environmental Bacterial Communities","display_name":"Comprehensive Meta-analysis of Ontology Annotated 16S rRNA Profiles Identifies Beta Diversity Clusters of Environmental Bacterial Communities","publication_year":2015,"publication_date":"2015-10-12","ids":{"openalex":"https://openalex.org/W1844490078","doi":"https://doi.org/10.1371/journal.pcbi.1004468","mag":"1844490078","pmid":"https://pubmed.ncbi.nlm.nih.gov/26458130"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1004468","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004468","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004468&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004468&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075543445","display_name":"Andreas Henschel","orcid":"https://orcid.org/0000-0003-1386-5372"},"institutions":[{"id":"https://openalex.org/I4400600953","display_name":"Masdar Institute of Science and Technology","ror":"https://ror.org/02xqgcz97","country_code":null,"type":"education","lineage":["https://openalex.org/I4400600953"]},{"id":"https://openalex.org/I4210087059","display_name":"Technology Innovation Institute","ror":"https://ror.org/001kv2y39","country_code":"AE","type":"facility","lineage":["https://openalex.org/I4210087059"]}],"countries":["AE"],"is_corresponding":true,"raw_author_name":"Andreas Henschel","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science/Institute Center Smart Infrastructure (iSmart), Masdar Institute, Abu Dhabi, UAE"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science/Institute Center Smart Infrastructure (iSmart), Masdar Institute, Abu Dhabi, UAE","institution_ids":["https://openalex.org/I4210087059","https://openalex.org/I4400600953"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037955479","display_name":"Muhammad Zohaib Anwar","orcid":"https://orcid.org/0000-0001-8236-485X"},"institutions":[{"id":"https://openalex.org/I4400600953","display_name":"Masdar Institute of Science and Technology","ror":"https://ror.org/02xqgcz97","country_code":null,"type":"education","lineage":["https://openalex.org/I4400600953"]},{"id":"https://openalex.org/I4210087059","display_name":"Technology Innovation Institute","ror":"https://ror.org/001kv2y39","country_code":"AE","type":"facility","lineage":["https://openalex.org/I4210087059"]}],"countries":["AE"],"is_corresponding":false,"raw_author_name":"Muhammad Zohaib Anwar","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science/Institute Center Smart Infrastructure (iSmart), Masdar Institute, Abu Dhabi, UAE"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science/Institute Center Smart Infrastructure (iSmart), Masdar Institute, Abu Dhabi, UAE","institution_ids":["https://openalex.org/I4210087059","https://openalex.org/I4400600953"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006605787","display_name":"Vimitha Manohar","orcid":null},"institutions":[{"id":"https://openalex.org/I4400600953","display_name":"Masdar Institute of Science and Technology","ror":"https://ror.org/02xqgcz97","country_code":null,"type":"education","lineage":["https://openalex.org/I4400600953"]},{"id":"https://openalex.org/I4210087059","display_name":"Technology Innovation Institute","ror":"https://ror.org/001kv2y39","country_code":"AE","type":"facility","lineage":["https://openalex.org/I4210087059"]}],"countries":["AE"],"is_corresponding":false,"raw_author_name":"Vimitha Manohar","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science/Institute Center Smart Infrastructure (iSmart), Masdar Institute, Abu Dhabi, UAE"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science/Institute Center Smart Infrastructure (iSmart), Masdar Institute, Abu Dhabi, UAE","institution_ids":["https://openalex.org/I4210087059","https://openalex.org/I4400600953"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5075543445"],"corresponding_institution_ids":["https://openalex.org/I4210087059","https://openalex.org/I4400600953"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":1.6564,"has_fulltext":true,"cited_by_count":25,"citation_normalized_percentile":{"value":0.83335617,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"11","issue":"10","first_page":"e1004468","last_page":"e1004468"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/beta-diversity","display_name":"Beta diversity","score":0.6195886135101318},{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.5849402546882629},{"id":"https://openalex.org/keywords/community-structure","display_name":"Community structure","score":0.5761640071868896},{"id":"https://openalex.org/keywords/microbial-population-biology","display_name":"Microbial population biology","score":0.5473761558532715},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.5335918664932251},{"id":"https://openalex.org/keywords/dendrogram","display_name":"Dendrogram","score":0.5172022581100464},{"id":"https://openalex.org/keywords/biosphere","display_name":"Biosphere","score":0.5055136680603027},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5024216175079346},{"id":"https://openalex.org/keywords/alpha-diversity","display_name":"Alpha diversity","score":0.5012009143829346},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.49858927726745605},{"id":"https://openalex.org/keywords/hierarchical-clustering","display_name":"Hierarchical clustering","score":0.4696221649646759},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.46868330240249634},{"id":"https://openalex.org/keywords/phylum","display_name":"Phylum","score":0.45286697149276733},{"id":"https://openalex.org/keywords/microbial-ecology","display_name":"Microbial ecology","score":0.43763267993927},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.42512083053588867},{"id":"https://openalex.org/keywords/phylogenetic-diversity","display_name":"Phylogenetic diversity","score":0.41899406909942627},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2960238456726074},{"id":"https://openalex.org/keywords/species-diversity","display_name":"Species diversity","score":0.2690349817276001},{"id":"https://openalex.org/keywords/species-richness","display_name":"Species richness","score":0.2164524495601654},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1763325333595276},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.16361188888549805},{"id":"https://openalex.org/keywords/paleontology","display_name":"Paleontology","score":0.1116163432598114},{"id":"https://openalex.org/keywords/genetic-diversity","display_name":"Genetic diversity","score":0.10841017961502075},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.09768730401992798}],"concepts":[{"id":"https://openalex.org/C25147867","wikidata":"https://www.wikidata.org/wiki/Q36039","display_name":"Beta diversity","level":3,"score":0.6195886135101318},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.5849402546882629},{"id":"https://openalex.org/C133079900","wikidata":"https://www.wikidata.org/wiki/Q5155065","display_name":"Community structure","level":2,"score":0.5761640071868896},{"id":"https://openalex.org/C81407943","wikidata":"https://www.wikidata.org/wiki/Q17149178","display_name":"Microbial population biology","level":3,"score":0.5473761558532715},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.5335918664932251},{"id":"https://openalex.org/C172312944","wikidata":"https://www.wikidata.org/wiki/Q1957903","display_name":"Dendrogram","level":4,"score":0.5172022581100464},{"id":"https://openalex.org/C107218244","wikidata":"https://www.wikidata.org/wiki/Q42762","display_name":"Biosphere","level":2,"score":0.5055136680603027},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5024216175079346},{"id":"https://openalex.org/C23913935","wikidata":"https://www.wikidata.org/wiki/Q2650881","display_name":"Alpha diversity","level":3,"score":0.5012009143829346},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.49858927726745605},{"id":"https://openalex.org/C92835128","wikidata":"https://www.wikidata.org/wiki/Q1277447","display_name":"Hierarchical clustering","level":3,"score":0.4696221649646759},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.46868330240249634},{"id":"https://openalex.org/C91066513","wikidata":"https://www.wikidata.org/wiki/Q38348","display_name":"Phylum","level":3,"score":0.45286697149276733},{"id":"https://openalex.org/C69562835","wikidata":"https://www.wikidata.org/wiki/Q3054637","display_name":"Microbial ecology","level":3,"score":0.43763267993927},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.42512083053588867},{"id":"https://openalex.org/C98722961","wikidata":"https://www.wikidata.org/wiki/Q7189436","display_name":"Phylogenetic diversity","level":4,"score":0.41899406909942627},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2960238456726074},{"id":"https://openalex.org/C62648534","wikidata":"https://www.wikidata.org/wiki/Q706937","display_name":"Species diversity","level":2,"score":0.2690349817276001},{"id":"https://openalex.org/C53565203","wikidata":"https://www.wikidata.org/wiki/Q17146659","display_name":"Species richness","level":2,"score":0.2164524495601654},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1763325333595276},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.16361188888549805},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.1116163432598114},{"id":"https://openalex.org/C81977670","wikidata":"https://www.wikidata.org/wiki/Q585259","display_name":"Genetic diversity","level":3,"score":0.10841017961502075},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.09768730401992798},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1004468","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004468","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004468&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:26458130","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26458130","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:pure.atira.dk:publications/4f8dc107-8be6-43a0-84ca-59041849720a","is_oa":false,"landing_page_url":"https://pure.au.dk/portal/en/publications/4f8dc107-8be6-43a0-84ca-59041849720a","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Henschel, A, Anwar, M Z & Manohar, V 2015, 'Comprehensive Meta-analysis of Ontology Annotated 16S rRNA Profiles Identifies Beta Diversity Clusters of Environmental Bacterial Communities', PLoS Computational Biology, vol. 11, no. 10, pp. e1004468. https://doi.org/10.1371/journal.pcbi.1004468","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:doaj.org/article:3bcef35e981b44b18bcd36951f7a1605","is_oa":true,"landing_page_url":"https://doaj.org/article/3bcef35e981b44b18bcd36951f7a1605","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 11, Iss 10, p e1004468 (2015)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:3584136","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4601763","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/1572859","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/_Comprehensive_Meta_analysis_of_Ontology_Annotated_16S_rRNA_Profiles_Identifies_Beta_Diversity_Clusters_of_Environmental_Bacterial_Communities_/1572859","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1004468","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004468","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004468&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6700000166893005,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G5587365642","display_name":null,"funder_award_id":"13XAAA2","funder_id":"https://openalex.org/F4320322420","funder_display_name":"Masdar Institute of Science and Technology"}],"funders":[{"id":"https://openalex.org/F4320322420","display_name":"Masdar Institute of Science and Technology","ror":"https://ror.org/05hffr360"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1844490078.pdf","grobid_xml":"https://content.openalex.org/works/W1844490078.grobid-xml"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W65332816","https://openalex.org/W1532325895","https://openalex.org/W1545338289","https://openalex.org/W1988925586","https://openalex.org/W1989348205","https://openalex.org/W1998377233","https://openalex.org/W2000259070","https://openalex.org/W2010656511","https://openalex.org/W2014785607","https://openalex.org/W2031611770","https://openalex.org/W2032230795","https://openalex.org/W2032678548","https://openalex.org/W2042893247","https://openalex.org/W2055615060","https://openalex.org/W2059237622","https://openalex.org/W2072970694","https://openalex.org/W2080283023","https://openalex.org/W2091922579","https://openalex.org/W2097877306","https://openalex.org/W2107093792","https://openalex.org/W2116041602","https://openalex.org/W2118629634","https://openalex.org/W2124351063","https://openalex.org/W2127602818","https://openalex.org/W2129687578","https://openalex.org/W2130731460","https://openalex.org/W2131186249","https://openalex.org/W2132022337","https://openalex.org/W2134891969","https://openalex.org/W2139297600","https://openalex.org/W2140264006","https://openalex.org/W2148525391","https://openalex.org/W2150597302","https://openalex.org/W2157159562","https://openalex.org/W2160870047","https://openalex.org/W2165286232","https://openalex.org/W2165446840","https://openalex.org/W2166171121","https://openalex.org/W2169157436","https://openalex.org/W2170024099","https://openalex.org/W2262129485","https://openalex.org/W2321937847","https://openalex.org/W2332771749","https://openalex.org/W2587557602","https://openalex.org/W4231934124","https://openalex.org/W4241328656","https://openalex.org/W6631834165","https://openalex.org/W6654306199","https://openalex.org/W6677164697","https://openalex.org/W6700647953"],"related_works":["https://openalex.org/W2964285961","https://openalex.org/W2116913636","https://openalex.org/W1972254271","https://openalex.org/W4366550121","https://openalex.org/W4392240433","https://openalex.org/W2604432341","https://openalex.org/W4403399123","https://openalex.org/W2039830964","https://openalex.org/W3044356248","https://openalex.org/W2762644077"],"abstract_inverted_index":{"Comprehensive":[0],"mapping":[1],"of":[2,7,20,56,63,80,95,113,126,153,168,186,194,226],"environmental":[3,83],"microbiomes":[4],"in":[5,15,43,59,71,133,197,224],"terms":[6,129,225],"their":[8,131],"compositional":[9,149,227],"features":[10],"remains":[11],"a":[12,72,78,100,141,165,172],"great":[13],"challenge":[14],"understanding":[16],"the":[17,21,28,32,93,176],"microbial":[18,154,169,187,195],"biosphere":[19],"Earth.":[22],"It":[23],"bears":[24],"promise":[25],"to":[26,146],"identify":[27],"driving":[29],"forces":[30],"behind":[31],"observed":[33],"community":[34,38,49,155,188],"patterns":[35,185],"and":[36,130,150,180,207,212],"whether":[37],"assembly":[39],"happens":[40],"deterministically.":[41],"Advances":[42],"Next":[44],"Generation":[45],"Sequencing":[46],"allow":[47],"large":[48],"profiling":[50],"studies,":[51,90],"exceeding":[52],"sequencing":[53],"data":[54],"output":[55],"conventional":[57,118],"methods":[58],"scale":[60],"by":[61],"orders":[62],"magnitude.":[64],"However,":[65],"appropriate":[66],"collection":[67],"systems":[68],"are":[69,215],"still":[70],"nascent":[73],"state.":[74],"We":[75,98,158,190],"here":[76],"present":[77],"database":[79],"20,427":[81],"diverse":[82],"16S":[84],"rRNA":[85],"profiles":[86],"from":[87],"2,426":[88],"independent":[89],"which":[91],"forms":[92],"foundation":[94],"our":[96],"meta-analysis.":[97],"conducted":[99],"sample":[101],"size":[102],"adaptive":[103],"all-against-all":[104],"beta":[105],"diversity":[106],"comparison":[107],"while":[108],"also":[109],"respecting":[110],"phylogenetic":[111],"relationships":[112],"Operational":[114],"Taxonomic":[115],"Units(OTUs).":[116],"After":[117],"hierarchical":[119],"clustering":[120],"we":[121,174],"systematically":[122],"test":[123],"for":[124],"enrichment":[125],"Environmental":[127],"Ontology":[128],"abstractions":[132],"all":[134],"possible":[135],"clusters.":[136],"This":[137],"post-hoc":[138],"algorithm":[139],"provides":[140],"novel":[142],"formalism":[143],"that":[144],"quantifies":[145],"what":[147],"extend":[148],"semantic":[151],"similarity":[152],"samples":[156,214,220],"coincide.":[157],"automatically":[159],"visualize":[160],"significantly":[161],"enriched":[162],"subclusters":[163],"on":[164,183],"comprehensive":[166,181],"dendrogram":[167],"communities.":[170],"As":[171],"result":[173],"obtain":[175],"hitherto":[177],"most":[178],"differentiated":[179],"view":[182],"global":[184],"diversity.":[189],"observe":[191],"strong":[192],"clusterability":[193],"communities":[196],"ecosystems":[198],"such":[199],"as":[200],"human/mammal-associated,":[201],"geothermal,":[202],"fresh":[203],"water,":[204],"plant-associated,":[205],"soils":[206],"rhizosphere":[208],"microbiomes,":[209],"whereas":[210],"hypersaline":[211],"anthropogenic":[213],"less":[216,222],"homogeneous.":[217],"Moreover,":[218],"saline":[219],"appear":[221],"cohesive":[223],"properties":[228],"than":[229],"previously":[230],"reported.":[231]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":3}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}