{"id":"https://openalex.org/W2138058993","doi":"https://doi.org/10.1371/journal.pcbi.1004393","title":"Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud","display_name":"Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud","publication_year":2015,"publication_date":"2015-08-06","ids":{"openalex":"https://openalex.org/W2138058993","doi":"https://doi.org/10.1371/journal.pcbi.1004393","mag":"2138058993","pmid":"https://pubmed.ncbi.nlm.nih.gov/26248053"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1004393","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004393","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004393&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004393&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035700326","display_name":"Malachi Griffith","orcid":"https://orcid.org/0000-0002-6388-446X"},"institutions":[{"id":"https://openalex.org/I114277686","display_name":"James S. McDonnell Foundation","ror":"https://ror.org/03dy4aq19","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I114277686"]},{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Malachi Griffith","raw_affiliation_strings":["McDonnell Genome Institute, Washington University School of Medicine, St. Louis, Missouri, United States of America; Siteman Cancer Center, Washington University School of Medicine, St. Louis, Missouri, United States of America; Department of Genetics, Washington University School of Medicine, St. Louis, Missouri, United States of America","Siteman Cancer Center, Washington University School of Medicine, St. Louis, Missouri, United States of America","Department of Genetics, Washington University School of Medicine, St. Louis, Missouri, United States of America","McDonnell Genome Institute, Washington University School of Medicine, St. Louis, Missouri, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"McDonnell Genome Institute, Washington University School of Medicine, St. Louis, Missouri, United States of America; Siteman Cancer Center, Washington University School of Medicine, St. Louis, Missouri, United States of America; Department of Genetics, Washington University School of Medicine, St. Louis, Missouri, United States of America","institution_ids":[]},{"raw_affiliation_string":"Siteman Cancer Center, Washington University School of Medicine, St. Louis, Missouri, United States of America","institution_ids":["https://openalex.org/I204465549"]},{"raw_affiliation_string":"Department of Genetics, Washington University School of Medicine, St. Louis, Missouri, United States of America","institution_ids":["https://openalex.org/I204465549"]},{"raw_affiliation_string":"McDonnell Genome Institute, Washington University School of Medicine, St. Louis, Missouri, United States of America","institution_ids":["https://openalex.org/I114277686"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057508602","display_name":"Jason Walker","orcid":"https://orcid.org/0000-0001-7547-5789"},"institutions":[{"id":"https://openalex.org/I114277686","display_name":"James S. McDonnell Foundation","ror":"https://ror.org/03dy4aq19","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I114277686"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jason R. Walker","raw_affiliation_strings":["McDonnell Genome Institute, Washington University School of Medicine, St. Louis, Missouri, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"McDonnell Genome Institute, Washington University School of Medicine, St. Louis, Missouri, United States of America","institution_ids":["https://openalex.org/I114277686"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058907044","display_name":"Nicholas C. Spies","orcid":"https://orcid.org/0000-0002-5873-351X"},"institutions":[{"id":"https://openalex.org/I114277686","display_name":"James S. McDonnell Foundation","ror":"https://ror.org/03dy4aq19","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I114277686"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicholas C. Spies","raw_affiliation_strings":["McDonnell Genome Institute, Washington University School of Medicine, St. Louis, Missouri, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"McDonnell Genome Institute, Washington University School of Medicine, St. Louis, Missouri, United States of America","institution_ids":["https://openalex.org/I114277686"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003910116","display_name":"Benjamin J. Ainscough","orcid":"https://orcid.org/0000-0001-8340-514X"},"institutions":[{"id":"https://openalex.org/I114277686","display_name":"James S. McDonnell Foundation","ror":"https://ror.org/03dy4aq19","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I114277686"]},{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benjamin J. Ainscough","raw_affiliation_strings":["McDonnell Genome Institute, Washington University School of Medicine, St. Louis, Missouri, United States of America; Siteman Cancer Center, Washington University School of Medicine, St. Louis, Missouri, United States of America","McDonnell Genome Institute, Washington University School of Medicine, St. Louis, Missouri, United States of America","Siteman Cancer Center, Washington University School of Medicine, St. Louis, Missouri, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"McDonnell Genome Institute, Washington University School of Medicine, St. Louis, Missouri, United States of America; Siteman Cancer Center, Washington University School of Medicine, St. Louis, Missouri, United States of America","institution_ids":[]},{"raw_affiliation_string":"McDonnell Genome Institute, Washington University School of Medicine, St. Louis, Missouri, United States of America","institution_ids":["https://openalex.org/I114277686"]},{"raw_affiliation_string":"Siteman Cancer Center, Washington University School of Medicine, St. Louis, Missouri, United States of America","institution_ids":["https://openalex.org/I204465549"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001076376","display_name":"Obi L. Griffith","orcid":"https://orcid.org/0000-0002-0843-4271"},"institutions":[{"id":"https://openalex.org/I114277686","display_name":"James S. McDonnell Foundation","ror":"https://ror.org/03dy4aq19","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I114277686"]},{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Obi L. Griffith","raw_affiliation_strings":["McDonnell Genome Institute, Washington University School of Medicine, St. Louis, Missouri, United States of America; Siteman Cancer Center, Washington University School of Medicine, St. Louis, Missouri, United States of America; Department of Genetics, Washington University School of Medicine, St. Louis, Missouri, United States of America; Department of Medicine, Washington University School of Medicine, St. Louis, Missouri, United States of America","Department of Genetics, Washington University School of Medicine, St. Louis, Missouri, United States of America","Department of Medicine, Washington University School of Medicine, St. Louis, Missouri, United States of America","McDonnell Genome Institute, Washington University School of Medicine, St. Louis, Missouri, United States of America","Siteman Cancer Center, Washington University School of Medicine, St. Louis, Missouri, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"McDonnell Genome Institute, Washington University School of Medicine, St. Louis, Missouri, United States of America; Siteman Cancer Center, Washington University School of Medicine, St. Louis, Missouri, United States of America; Department of Genetics, Washington University School of Medicine, St. Louis, Missouri, United States of America; Department of Medicine, Washington University School of Medicine, St. Louis, Missouri, United States of America","institution_ids":[]},{"raw_affiliation_string":"Department of Genetics, Washington University School of Medicine, St. Louis, Missouri, United States of America","institution_ids":["https://openalex.org/I204465549"]},{"raw_affiliation_string":"Department of Medicine, Washington University School of Medicine, St. Louis, Missouri, United States of America","institution_ids":["https://openalex.org/I204465549"]},{"raw_affiliation_string":"McDonnell Genome Institute, Washington University School of Medicine, St. Louis, Missouri, United States of America","institution_ids":["https://openalex.org/I114277686"]},{"raw_affiliation_string":"Siteman Cancer Center, Washington University School of Medicine, St. Louis, Missouri, United States of America","institution_ids":["https://openalex.org/I204465549"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5001076376","https://openalex.org/A5035700326"],"corresponding_institution_ids":["https://openalex.org/I114277686","https://openalex.org/I204465549"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":5.1199,"has_fulltext":true,"cited_by_count":126,"citation_normalized_percentile":{"value":0.96145803,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"11","issue":"8","first_page":"e1004393","last_page":"e1004393"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9861000180244446,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6185302138328552},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.6045480370521545},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5351245403289795},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.49645835161209106},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.47552159428596497},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.4720360040664673},{"id":"https://openalex.org/keywords/informatics","display_name":"Informatics","score":0.4619249701499939},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4345911145210266},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3890461325645447},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3396226763725281},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.26522278785705566},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.21969124674797058},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.19112765789031982}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6185302138328552},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.6045480370521545},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5351245403289795},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.49645835161209106},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.47552159428596497},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.4720360040664673},{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.4619249701499939},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4345911145210266},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3890461325645447},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3396226763725281},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.26522278785705566},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21969124674797058},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.19112765789031982},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1004393","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004393","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004393&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:26248053","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26248053","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:digitalcommons.wustl.edu:open_access_pubs-5465","is_oa":true,"landing_page_url":"https://digitalcommons.wustl.edu/open_access_pubs/4459","pdf_url":"https://digitalcommons.wustl.edu/open_access_pubs/4459","source":{"id":"https://openalex.org/S4306400764","display_name":"Digital Commons@Becker (Washington University School of Medicine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I204465549","host_organization_name":"Washington University in St. Louis","host_organization_lineage":["https://openalex.org/I204465549"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Open Access Publications","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:2f6932ac1d9444ce9cef80016a415be4","is_oa":true,"landing_page_url":"https://doaj.org/article/2f6932ac1d9444ce9cef80016a415be4","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 11, Iss 8, p e1004393 (2015)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:3510564","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4527835","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/1504418","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/_Informatics_for_RNA_Sequencing_A_Web_Resource_for_Analysis_on_the_Cloud_/1504418","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1004393","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004393","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004393&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320314202","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2138058993.pdf","grobid_xml":"https://content.openalex.org/works/W2138058993.grobid-xml"},"referenced_works_count":94,"referenced_works":["https://openalex.org/W189143987","https://openalex.org/W276882634","https://openalex.org/W1501862196","https://openalex.org/W1594950610","https://openalex.org/W1840434126","https://openalex.org/W1969647281","https://openalex.org/W1969739015","https://openalex.org/W1971899779","https://openalex.org/W1972417326","https://openalex.org/W1973094248","https://openalex.org/W1974489853","https://openalex.org/W1974611660","https://openalex.org/W1977361180","https://openalex.org/W1977957409","https://openalex.org/W1980106585","https://openalex.org/W1981509058","https://openalex.org/W1981528949","https://openalex.org/W1984621241","https://openalex.org/W1984708728","https://openalex.org/W1990228001","https://openalex.org/W1992088789","https://openalex.org/W1993023683","https://openalex.org/W2000860171","https://openalex.org/W2004791359","https://openalex.org/W2005036868","https://openalex.org/W2011920499","https://openalex.org/W2015292449","https://openalex.org/W2025302103","https://openalex.org/W2026141529","https://openalex.org/W2028384803","https://openalex.org/W2031874858","https://openalex.org/W2034355012","https://openalex.org/W2036272952","https://openalex.org/W2042337609","https://openalex.org/W2042479762","https://openalex.org/W2047765648","https://openalex.org/W2053746679","https://openalex.org/W2054576015","https://openalex.org/W2055770801","https://openalex.org/W2060014806","https://openalex.org/W2060195299","https://openalex.org/W2060842569","https://openalex.org/W2060880575","https://openalex.org/W2061537056","https://openalex.org/W2062834553","https://openalex.org/W2064397275","https://openalex.org/W2064469303","https://openalex.org/W2070494252","https://openalex.org/W2073380432","https://openalex.org/W2074414424","https://openalex.org/W2097065948","https://openalex.org/W2097075232","https://openalex.org/W2097117811","https://openalex.org/W2100305481","https://openalex.org/W2101466802","https://openalex.org/W2107060225","https://openalex.org/W2107363136","https://openalex.org/W2108234281","https://openalex.org/W2112888168","https://openalex.org/W2114632020","https://openalex.org/W2116528446","https://openalex.org/W2117131162","https://openalex.org/W2117608012","https://openalex.org/W2119613560","https://openalex.org/W2121852482","https://openalex.org/W2123497973","https://openalex.org/W2123579165","https://openalex.org/W2124166877","https://openalex.org/W2126419817","https://openalex.org/W2128142447","https://openalex.org/W2131271579","https://openalex.org/W2134199796","https://openalex.org/W2134513968","https://openalex.org/W2135893370","https://openalex.org/W2137896565","https://openalex.org/W2141224543","https://openalex.org/W2141458291","https://openalex.org/W2141558216","https://openalex.org/W2152556446","https://openalex.org/W2152710395","https://openalex.org/W2155804510","https://openalex.org/W2155806289","https://openalex.org/W2159675211","https://openalex.org/W2160164696","https://openalex.org/W2160734881","https://openalex.org/W2161106528","https://openalex.org/W2161859073","https://openalex.org/W2166550754","https://openalex.org/W2166820820","https://openalex.org/W2169095038","https://openalex.org/W2169810552","https://openalex.org/W2347056806","https://openalex.org/W2775810304","https://openalex.org/W4254624568"],"related_works":["https://openalex.org/W4394359997","https://openalex.org/W4362511652","https://openalex.org/W4362511917","https://openalex.org/W4362511922","https://openalex.org/W4362485688","https://openalex.org/W4362530184","https://openalex.org/W4362530193","https://openalex.org/W2904597490","https://openalex.org/W4362485661","https://openalex.org/W4394365953"],"abstract_inverted_index":{"Massively":[0],"parallel":[1],"RNA":[2,14],"sequencing":[3],"(RNA-seq)":[4],"has":[5],"rapidly":[6],"become":[7],"the":[8],"assay":[9],"of":[10],"choice":[11],"for":[12],"interrogating":[13],"transcript":[15],"abundance":[16],"and":[17,30,57,64,74],"diversity.":[18],"This":[19],"article":[20],"provides":[21],"a":[22],"detailed":[23],"introduction":[24],"to":[25],"fundamental":[26],"RNA-seq":[27,37],"molecular":[28],"biology":[29],"informatics":[31],"concepts.":[32],"We":[33],"make":[34],"available":[35,78],"open-access":[36],"tutorials":[38,63],"that":[39],"cover":[40],"cloud":[41],"computing,":[42],"tool":[43],"installation,":[44],"relevant":[45],"file":[46],"formats,":[47],"reference":[48],"genomes,":[49],"transcriptome":[50],"annotations,":[51],"quality-control":[52],"strategies,":[53],"expression,":[54,56],"differential":[55],"alternative":[58],"splicing":[59],"analysis":[60,72],"methods.":[61],"These":[62],"additional":[65],"training":[66],"resources":[67],"are":[68],"accompanied":[69],"by":[70],"complete":[71],"pipelines":[73],"test":[75],"datasets":[76],"made":[77],"without":[79],"encumbrance":[80],"at":[81],"www.rnaseq.wiki.":[82]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":20},{"year":2022,"cited_by_count":15},{"year":2021,"cited_by_count":22},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":11},{"year":2017,"cited_by_count":14},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":3}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
