{"id":"https://openalex.org/W1941318214","doi":"https://doi.org/10.1371/journal.pcbi.1004391","title":"miRTex: A Text Mining System for miRNA-Gene Relation Extraction","display_name":"miRTex: A Text Mining System for miRNA-Gene Relation Extraction","publication_year":2015,"publication_date":"2015-09-25","ids":{"openalex":"https://openalex.org/W1941318214","doi":"https://doi.org/10.1371/journal.pcbi.1004391","mag":"1941318214","pmid":"https://pubmed.ncbi.nlm.nih.gov/26407127"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1004391","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004391","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004391&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004391&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100438687","display_name":"Gang Li","orcid":"https://orcid.org/0000-0002-3981-2239"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Gang Li","raw_affiliation_strings":["Department of Computer and Information Sciences, University of Delaware, Newark, Delaware, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Sciences, University of Delaware, Newark, Delaware, United States of America","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010355751","display_name":"Karen Ross","orcid":"https://orcid.org/0000-0003-4633-6055"},"institutions":[{"id":"https://openalex.org/I184565670","display_name":"Georgetown University","ror":"https://ror.org/05vzafd60","country_code":"US","type":"education","lineage":["https://openalex.org/I184565670"]},{"id":"https://openalex.org/I2799903593","display_name":"Georgetown University Medical Center","ror":"https://ror.org/00hjz7x27","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799903593"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Karen E. Ross","raw_affiliation_strings":["Department of Biochemistry and Molecular & Cellular Biology, Georgetown University Medical Center, Washington, DC, United States of America; Center for Bioinformatics and Computational Biology, University of Delaware, Newark, Delaware, United States of America","Center for Bioinformatics and Computational Biology, University of Delaware, Newark, Delaware, United States of America","Department of Biochemistry and Molecular & Cellular Biology, Georgetown University Medical Center, Washington, DC, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular & Cellular Biology, Georgetown University Medical Center, Washington, DC, United States of America; Center for Bioinformatics and Computational Biology, University of Delaware, Newark, Delaware, United States of America","institution_ids":["https://openalex.org/I184565670","https://openalex.org/I2799903593","https://openalex.org/I86501945"]},{"raw_affiliation_string":"Center for Bioinformatics and Computational Biology, University of Delaware, Newark, Delaware, United States of America","institution_ids":["https://openalex.org/I86501945"]},{"raw_affiliation_string":"Department of Biochemistry and Molecular & Cellular Biology, Georgetown University Medical Center, Washington, DC, United States of America","institution_ids":["https://openalex.org/I184565670","https://openalex.org/I2799903593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001355963","display_name":"Cecilia N. Arighi","orcid":"https://orcid.org/0000-0002-0803-4817"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cecilia N. Arighi","raw_affiliation_strings":["Center for Bioinformatics and Computational Biology, University of Delaware, Newark, Delaware, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics and Computational Biology, University of Delaware, Newark, Delaware, United States of America","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085113833","display_name":"Yifan Peng","orcid":"https://orcid.org/0000-0001-9309-8331"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yifan Peng","raw_affiliation_strings":["Department of Computer and Information Sciences, University of Delaware, Newark, Delaware, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Sciences, University of Delaware, Newark, Delaware, United States of America","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053761444","display_name":"Cathy Wu","orcid":"https://orcid.org/0000-0001-6379-8601"},"institutions":[{"id":"https://openalex.org/I184565670","display_name":"Georgetown University","ror":"https://ror.org/05vzafd60","country_code":"US","type":"education","lineage":["https://openalex.org/I184565670"]},{"id":"https://openalex.org/I2799903593","display_name":"Georgetown University Medical Center","ror":"https://ror.org/00hjz7x27","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799903593"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cathy H. Wu","raw_affiliation_strings":["Department of Computer and Information Sciences, University of Delaware, Newark, Delaware, United States of America; Department of Biochemistry and Molecular & Cellular Biology, Georgetown University Medical Center, Washington, DC, United States of America; Center for Bioinformatics and Computational Biology, University of Delaware, Newark, Delaware, United States of America","Department of Computer and Information Sciences, University of Delaware, Newark, Delaware, United States of America","Center for Bioinformatics and Computational Biology, University of Delaware, Newark, Delaware, United States of America","Department of Biochemistry and Molecular & Cellular Biology, Georgetown University Medical Center, Washington, DC, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Sciences, University of Delaware, Newark, Delaware, United States of America; Department of Biochemistry and Molecular & Cellular Biology, Georgetown University Medical Center, Washington, DC, United States of America; Center for Bioinformatics and Computational Biology, University of Delaware, Newark, Delaware, United States of America","institution_ids":["https://openalex.org/I184565670","https://openalex.org/I86501945"]},{"raw_affiliation_string":"Department of Computer and Information Sciences, University of Delaware, Newark, Delaware, United States of America","institution_ids":["https://openalex.org/I86501945"]},{"raw_affiliation_string":"Center for Bioinformatics and Computational Biology, University of Delaware, Newark, Delaware, United States of America","institution_ids":["https://openalex.org/I86501945"]},{"raw_affiliation_string":"Department of Biochemistry and Molecular & Cellular Biology, Georgetown University Medical Center, Washington, DC, United States of America","institution_ids":["https://openalex.org/I184565670","https://openalex.org/I2799903593"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027009667","display_name":"K. Vijay\u2010Shanker","orcid":"https://orcid.org/0000-0003-0958-3073"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"K. Vijay-Shanker","raw_affiliation_strings":["Department of Computer and Information Sciences, University of Delaware, Newark, Delaware, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Sciences, University of Delaware, Newark, Delaware, United States of America","institution_ids":["https://openalex.org/I86501945"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5100438687"],"corresponding_institution_ids":["https://openalex.org/I86501945"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":4.2713,"has_fulltext":true,"cited_by_count":68,"citation_normalized_percentile":{"value":0.95039389,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":100},"biblio":{"volume":"11","issue":"9","first_page":"e1004391","last_page":"e1004391"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9873999953269958,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13157","display_name":"Cancer-related gene regulation","score":0.9506999850273132,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.6758262515068054},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5598414540290833},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5333412289619446},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.4598345160484314},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.44536179304122925},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.4400615096092224},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.42491063475608826},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3596142530441284},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2895488142967224}],"concepts":[{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.6758262515068054},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5598414540290833},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5333412289619446},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.4598345160484314},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.44536179304122925},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.4400615096092224},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.42491063475608826},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3596142530441284},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2895488142967224}],"mesh":[{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1004391","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004391","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004391&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:26407127","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26407127","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:RePEc:plo:pcbi00:1004391","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004391","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:b7b4a10aa6004ae586473d7a7592ddd7","is_oa":true,"landing_page_url":"https://doaj.org/article/b7b4a10aa6004ae586473d7a7592ddd7","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 11, Iss 9, p e1004391 (2015)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:3569464","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4583433","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/1557325","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/_miRTex_A_Text_Mining_System_for_miRNA_Gene_Relation_Extraction_/1557325","pdf_url":null,"source":{"id":"https://openalex.org/S4306402621","display_name":"INDIGO (University of Illinois at Chicago)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I39422238","host_organization_name":"University of Illinois Chicago","host_organization_lineage":["https://openalex.org/I39422238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1004391","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004391","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004391&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6899999976158142,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G3115553707","display_name":null,"funder_award_id":"P20 GM103446","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4629778535","display_name":null,"funder_award_id":"P20 GM103446","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G5870083451","display_name":"ABI Development: Integrative Bioinformatics for Knowledge Discovery of PTM Networks","funder_award_id":"1062520","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6905243600","display_name":null,"funder_award_id":"P20 GM103446","funder_id":"https://openalex.org/F4320314254","funder_display_name":"Delaware IDeA Network of Biomedical Research Excellence"},{"id":"https://openalex.org/G7089253139","display_name":null,"funder_award_id":"GM103446","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8479182213","display_name":null,"funder_award_id":"P20 GM103446","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8806795173","display_name":null,"funder_award_id":"ABI-1062520","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320314254","display_name":"Delaware IDeA Network of Biomedical Research Excellence","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1941318214.pdf","grobid_xml":"https://content.openalex.org/works/W1941318214.grobid-xml"},"referenced_works_count":60,"referenced_works":["https://openalex.org/W10376690","https://openalex.org/W122290181","https://openalex.org/W1489689270","https://openalex.org/W1535015163","https://openalex.org/W1563088657","https://openalex.org/W1589857571","https://openalex.org/W1607822593","https://openalex.org/W1967515816","https://openalex.org/W1983889109","https://openalex.org/W1986579413","https://openalex.org/W1988995745","https://openalex.org/W1989493946","https://openalex.org/W1990794790","https://openalex.org/W2007138966","https://openalex.org/W2016106370","https://openalex.org/W2031014255","https://openalex.org/W2034293882","https://openalex.org/W2041053370","https://openalex.org/W2053835153","https://openalex.org/W2064314529","https://openalex.org/W2070488286","https://openalex.org/W2071925258","https://openalex.org/W2075322787","https://openalex.org/W2091394666","https://openalex.org/W2099188065","https://openalex.org/W2105924489","https://openalex.org/W2107005506","https://openalex.org/W2116661471","https://openalex.org/W2117625122","https://openalex.org/W2118585731","https://openalex.org/W2123079914","https://openalex.org/W2123442489","https://openalex.org/W2124045889","https://openalex.org/W2128768066","https://openalex.org/W2133658633","https://openalex.org/W2134118500","https://openalex.org/W2135283418","https://openalex.org/W2137257434","https://openalex.org/W2138664009","https://openalex.org/W2140409823","https://openalex.org/W2140537064","https://openalex.org/W2148488766","https://openalex.org/W2151025545","https://openalex.org/W2152398020","https://openalex.org/W2153635508","https://openalex.org/W2155142785","https://openalex.org/W2155518941","https://openalex.org/W2163106706","https://openalex.org/W2166111585","https://openalex.org/W2166240615","https://openalex.org/W2250469303","https://openalex.org/W2250591852","https://openalex.org/W2251443519","https://openalex.org/W2315983151","https://openalex.org/W2605068739","https://openalex.org/W2626900720","https://openalex.org/W4254522893","https://openalex.org/W6642045941","https://openalex.org/W6677656871","https://openalex.org/W6940158366"],"related_works":["https://openalex.org/W2128583238","https://openalex.org/W2134405083","https://openalex.org/W2049907435","https://openalex.org/W2034500416","https://openalex.org/W2057742104","https://openalex.org/W2034377088","https://openalex.org/W4283692078","https://openalex.org/W2025542119","https://openalex.org/W2613929436","https://openalex.org/W2347793859"],"abstract_inverted_index":{"MicroRNAs":[0],"(miRNAs)":[1],"regulate":[2,152],"a":[3,35,61,114],"wide":[4],"range":[5],"of":[6,64,77,168,175],"cellular":[7],"and":[8,47,56,92,119],"developmental":[9],"processes":[10],"through":[11],"gene":[12,21],"expression":[13],"suppression":[14],"or":[15],"mRNA":[16],"degradation.":[17],"Experimentally":[18],"validated":[19],"miRNA":[20],"targets":[22],"are":[23,111],"often":[24],"reported":[25],"in":[26,97,113,136,147,158,172],"the":[27,73,89,94,98,108,123,153,166,173],"literature.":[28],"In":[29],"this":[30],"paper,":[31],"we":[32,129],"describe":[33],"miRTex,":[34,128],"text":[36,82,170],"mining":[37,83,171],"system":[38,52],"that":[39],"extracts":[40],"miRNA-target":[41],"relations,":[42,151],"as":[43,45,141,143],"well":[44,142],"miRNA-gene":[46,144],"gene-miRNA":[48],"regulation":[49],"relations.":[50,78],"The":[51,104],"achieves":[53],"good":[54],"precision":[55],"recall":[57],"when":[58],"evaluated":[59],"on":[60,72],"literature":[62],"corpus":[63],"150":[65],"abstracts":[66,91,110],"with":[67,149],"F-scores":[68],"close":[69],"to":[70,86,155],"0.90":[71],"three":[74],"different":[75],"types":[76],"We":[79],"conducted":[80],"full-scale":[81],"using":[84],"miRTex":[85,169],"process":[87],"all":[88,93,107],"Medline":[90,109],"full-length":[95],"articles":[96],"PubMed":[99],"Central":[100],"Open":[101],"Access":[102],"Subset.":[103],"results":[105],"for":[106,116],"stored":[112],"database":[115],"interactive":[117],"query":[118],"file":[120],"download":[121],"via":[122],"website":[124],"at":[125],"http://proteininformationresource.org/mirtex.":[126],"Using":[127],"identified":[130],"genes":[131],"potentially":[132],"regulated":[133],"by":[134],"miRNAs":[135],"Triple":[137],"Negative":[138],"Breast":[139],"Cancer,":[140],"relations":[145],"that,":[146],"conjunction":[148],"kinase-substrate":[150],"response":[154],"abiotic":[156],"stress":[157],"Arabidopsis":[159],"thaliana.":[160],"These":[161],"two":[162],"use":[163],"cases":[164],"demonstrate":[165],"usefulness":[167],"analysis":[174],"miRNA-regulated":[176],"biological":[177],"processes.":[178]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":14},{"year":2017,"cited_by_count":10},{"year":2016,"cited_by_count":7}],"updated_date":"2026-07-26T07:53:14.480251","created_date":"2025-10-10T00:00:00"}
