{"id":"https://openalex.org/W2019181197","doi":"https://doi.org/10.1371/journal.pcbi.1004051","title":"Protein Topology Determines Cysteine Oxidation Fate: The Case of Sulfenyl Amide Formation among Protein Families","display_name":"Protein Topology Determines Cysteine Oxidation Fate: The Case of Sulfenyl Amide Formation among Protein Families","publication_year":2015,"publication_date":"2015-03-05","ids":{"openalex":"https://openalex.org/W2019181197","doi":"https://doi.org/10.1371/journal.pcbi.1004051","mag":"2019181197","pmid":"https://pubmed.ncbi.nlm.nih.gov/25741692"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1004051","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004051","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004051&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004051&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081101274","display_name":"Lucas A. Defelipe","orcid":"https://orcid.org/0000-0001-7859-7300"},"institutions":[{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]},{"id":"https://openalex.org/I24354313","display_name":"Universidad de Buenos Aires","ror":"https://ror.org/0081fs513","country_code":"AR","type":"education","lineage":["https://openalex.org/I24354313"]},{"id":"https://openalex.org/I53241121","display_name":"Fundaci\u00f3n Ciencias Exactas y Naturales","ror":"https://ror.org/05rxmkq09","country_code":"AR","type":"nonprofit","lineage":["https://openalex.org/I53241121"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Lucas A. Defelipe","raw_affiliation_strings":["Departamento de Qu\u00edmica Biol\u00f3gica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina; INQUIMAE/UBA-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires. Buenos Aires, Argentina","Departamento de Qu\u00edmica Biol\u00f3gica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina","INQUIMAE/UBA-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires. Buenos Aires, Argentina"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Qu\u00edmica Biol\u00f3gica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina; INQUIMAE/UBA-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires. Buenos Aires, Argentina","institution_ids":["https://openalex.org/I53241121"]},{"raw_affiliation_string":"Departamento de Qu\u00edmica Biol\u00f3gica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina","institution_ids":["https://openalex.org/I24354313","https://openalex.org/I53241121"]},{"raw_affiliation_string":"INQUIMAE/UBA-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires. Buenos Aires, Argentina","institution_ids":["https://openalex.org/I151201029","https://openalex.org/I24354313","https://openalex.org/I53241121"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060622294","display_name":"Esteban Lanzarotti","orcid":null},"institutions":[{"id":"https://openalex.org/I24354313","display_name":"Universidad de Buenos Aires","ror":"https://ror.org/0081fs513","country_code":"AR","type":"education","lineage":["https://openalex.org/I24354313"]},{"id":"https://openalex.org/I53241121","display_name":"Fundaci\u00f3n Ciencias Exactas y Naturales","ror":"https://ror.org/05rxmkq09","country_code":"AR","type":"nonprofit","lineage":["https://openalex.org/I53241121"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Esteban Lanzarotti","raw_affiliation_strings":["Departamento de Qu\u00edmica Biol\u00f3gica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Qu\u00edmica Biol\u00f3gica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina","institution_ids":["https://openalex.org/I24354313","https://openalex.org/I53241121"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036885587","display_name":"Diego F. Gauto","orcid":"https://orcid.org/0000-0003-3757-2830"},"institutions":[{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]},{"id":"https://openalex.org/I24354313","display_name":"Universidad de Buenos Aires","ror":"https://ror.org/0081fs513","country_code":"AR","type":"education","lineage":["https://openalex.org/I24354313"]},{"id":"https://openalex.org/I53241121","display_name":"Fundaci\u00f3n Ciencias Exactas y Naturales","ror":"https://ror.org/05rxmkq09","country_code":"AR","type":"nonprofit","lineage":["https://openalex.org/I53241121"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Diego Gauto","raw_affiliation_strings":["INQUIMAE/UBA-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires. Buenos Aires, Argentina"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INQUIMAE/UBA-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires. Buenos Aires, Argentina","institution_ids":["https://openalex.org/I151201029","https://openalex.org/I24354313","https://openalex.org/I53241121"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089022257","display_name":"Marcelo A. Mart\u00ed","orcid":"https://orcid.org/0000-0002-7911-9340"},"institutions":[{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]},{"id":"https://openalex.org/I24354313","display_name":"Universidad de Buenos Aires","ror":"https://ror.org/0081fs513","country_code":"AR","type":"education","lineage":["https://openalex.org/I24354313"]},{"id":"https://openalex.org/I53241121","display_name":"Fundaci\u00f3n Ciencias Exactas y Naturales","ror":"https://ror.org/05rxmkq09","country_code":"AR","type":"nonprofit","lineage":["https://openalex.org/I53241121"]}],"countries":["AR"],"is_corresponding":true,"raw_author_name":"Marcelo A. Marti","raw_affiliation_strings":["Departamento de Qu\u00edmica Biol\u00f3gica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina; INQUIMAE/UBA-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires. Buenos Aires, Argentina","Departamento de Qu\u00edmica Biol\u00f3gica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina","INQUIMAE/UBA-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires. Buenos Aires, Argentina"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Qu\u00edmica Biol\u00f3gica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina; INQUIMAE/UBA-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires. Buenos Aires, Argentina","institution_ids":["https://openalex.org/I53241121"]},{"raw_affiliation_string":"Departamento de Qu\u00edmica Biol\u00f3gica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina","institution_ids":["https://openalex.org/I24354313","https://openalex.org/I53241121"]},{"raw_affiliation_string":"INQUIMAE/UBA-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires. Buenos Aires, Argentina","institution_ids":["https://openalex.org/I151201029","https://openalex.org/I24354313","https://openalex.org/I53241121"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035789659","display_name":"Adri\u00e1n G. Turjanski","orcid":"https://orcid.org/0000-0003-2190-137X"},"institutions":[{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]},{"id":"https://openalex.org/I24354313","display_name":"Universidad de Buenos Aires","ror":"https://ror.org/0081fs513","country_code":"AR","type":"education","lineage":["https://openalex.org/I24354313"]},{"id":"https://openalex.org/I53241121","display_name":"Fundaci\u00f3n Ciencias Exactas y Naturales","ror":"https://ror.org/05rxmkq09","country_code":"AR","type":"nonprofit","lineage":["https://openalex.org/I53241121"]}],"countries":["AR"],"is_corresponding":true,"raw_author_name":"Adri\u00e1n G. Turjanski","raw_affiliation_strings":["Departamento de Qu\u00edmica Biol\u00f3gica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina; INQUIMAE/UBA-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires. Buenos Aires, Argentina","Departamento de Qu\u00edmica Biol\u00f3gica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina","INQUIMAE/UBA-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires. Buenos Aires, Argentina"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Qu\u00edmica Biol\u00f3gica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina; INQUIMAE/UBA-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires. Buenos Aires, Argentina","institution_ids":["https://openalex.org/I53241121"]},{"raw_affiliation_string":"Departamento de Qu\u00edmica Biol\u00f3gica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina","institution_ids":["https://openalex.org/I24354313","https://openalex.org/I53241121"]},{"raw_affiliation_string":"INQUIMAE/UBA-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires. Buenos Aires, Argentina","institution_ids":["https://openalex.org/I151201029","https://openalex.org/I24354313","https://openalex.org/I53241121"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5035789659","https://openalex.org/A5089022257"],"corresponding_institution_ids":["https://openalex.org/I151201029","https://openalex.org/I24354313","https://openalex.org/I53241121"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":2.6199,"has_fulltext":true,"cited_by_count":46,"citation_normalized_percentile":{"value":0.91870735,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"11","issue":"3","first_page":"e1004051","last_page":"e1004051"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12505","display_name":"Peptidase Inhibition and Analysis","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12505","display_name":"Peptidase Inhibition and Analysis","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11884","display_name":"Redox biology and oxidative stress","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cysteine","display_name":"Cysteine","score":0.807024359703064},{"id":"https://openalex.org/keywords/sulfenic-acid","display_name":"Sulfenic acid","score":0.7712455987930298},{"id":"https://openalex.org/keywords/amide","display_name":"Amide","score":0.7622640132904053},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.7425931096076965},{"id":"https://openalex.org/keywords/stereochemistry","display_name":"Stereochemistry","score":0.5510311126708984},{"id":"https://openalex.org/keywords/residue","display_name":"Residue (chemistry)","score":0.5098799467086792},{"id":"https://openalex.org/keywords/catalysis","display_name":"Catalysis","score":0.4616142511367798},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.43183431029319763},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.41334256529808044},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.3678775131702423},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.28812211751937866}],"concepts":[{"id":"https://openalex.org/C2779201268","wikidata":"https://www.wikidata.org/wiki/Q186474","display_name":"Cysteine","level":3,"score":0.807024359703064},{"id":"https://openalex.org/C2780158455","wikidata":"https://www.wikidata.org/wiki/Q411721","display_name":"Sulfenic acid","level":4,"score":0.7712455987930298},{"id":"https://openalex.org/C2778439535","wikidata":"https://www.wikidata.org/wiki/Q188777","display_name":"Amide","level":2,"score":0.7622640132904053},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.7425931096076965},{"id":"https://openalex.org/C71240020","wikidata":"https://www.wikidata.org/wiki/Q186011","display_name":"Stereochemistry","level":1,"score":0.5510311126708984},{"id":"https://openalex.org/C2781338088","wikidata":"https://www.wikidata.org/wiki/Q903495","display_name":"Residue (chemistry)","level":2,"score":0.5098799467086792},{"id":"https://openalex.org/C161790260","wikidata":"https://www.wikidata.org/wiki/Q82264","display_name":"Catalysis","level":2,"score":0.4616142511367798},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.43183431029319763},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.41334256529808044},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.3678775131702423},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.28812211751937866}],"mesh":[{"descriptor_ui":"D000577","descriptor_name":"Amides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000577","descriptor_name":"Amides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000577","descriptor_name":"Amides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000577","descriptor_name":"Amides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000577","descriptor_name":"Amides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000577","descriptor_name":"Amides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D003545","descriptor_name":"Cysteine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003545","descriptor_name":"Cysteine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003545","descriptor_name":"Cysteine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003545","descriptor_name":"Cysteine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D003545","descriptor_name":"Cysteine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D003545","descriptor_name":"Cysteine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010084","descriptor_name":"Oxidation-Reduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010084","descriptor_name":"Oxidation-Reduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010084","descriptor_name":"Oxidation-Reduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013434","descriptor_name":"Sulfenic Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013434","descriptor_name":"Sulfenic Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013434","descriptor_name":"Sulfenic Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013434","descriptor_name":"Sulfenic Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013434","descriptor_name":"Sulfenic Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013434","descriptor_name":"Sulfenic Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1004051","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004051","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004051&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:25741692","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25741692","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:ri.conicet.gov.ar:11336/59212","is_oa":true,"landing_page_url":"http://hdl.handle.net/11336/59212","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"reponame:CONICET Digital (CONICET)","raw_type":"http://purl.org/coar/resource_type/c_6501"},{"id":"pmh:oai:europepmc.org:3325336","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4351059","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:d5fad7eb11e548fc86402a7601d9290d","is_oa":true,"landing_page_url":"https://doaj.org/article/d5fad7eb11e548fc86402a7601d9290d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 11, Iss 3, p e1004051 (2015)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/1329675","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/_Protein_Topology_Determines_Cysteine_Oxidation_Fate_The_Case_of_Sulfenyl_Amide_Formation_among_Protein_Families_/1329675","pdf_url":null,"source":{"id":"https://openalex.org/S4306402621","display_name":"INDIGO (University of Illinois at Chicago)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I39422238","host_organization_name":"University of Illinois Chicago","host_organization_lineage":["https://openalex.org/I39422238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1004051","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004051","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004051&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.550000011920929}],"awards":[{"id":"https://openalex.org/G2439265903","display_name":null,"funder_award_id":"CONICET","funder_id":"https://openalex.org/F4320323257","funder_display_name":"Universidad de Buenos Aires"}],"funders":[{"id":"https://openalex.org/F4320321594","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59"},{"id":"https://openalex.org/F4320323257","display_name":"Universidad de Buenos Aires","ror":"https://ror.org/0081fs513"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2019181197.pdf","grobid_xml":"https://content.openalex.org/works/W2019181197.grobid-xml"},"referenced_works_count":99,"referenced_works":["https://openalex.org/W17382811","https://openalex.org/W1599373893","https://openalex.org/W1738841762","https://openalex.org/W1920197602","https://openalex.org/W1964634787","https://openalex.org/W1965502361","https://openalex.org/W1975267506","https://openalex.org/W1976161355","https://openalex.org/W1976499671","https://openalex.org/W1981368803","https://openalex.org/W1981955170","https://openalex.org/W1983493485","https://openalex.org/W1991105829","https://openalex.org/W1993591358","https://openalex.org/W1994941561","https://openalex.org/W1996671717","https://openalex.org/W1996878825","https://openalex.org/W1998408986","https://openalex.org/W2001107502","https://openalex.org/W2005755199","https://openalex.org/W2006414127","https://openalex.org/W2008708467","https://openalex.org/W2011398963","https://openalex.org/W2014447556","https://openalex.org/W2020285880","https://openalex.org/W2020413876","https://openalex.org/W2021345207","https://openalex.org/W2022065323","https://openalex.org/W2027685123","https://openalex.org/W2028704021","https://openalex.org/W2029667189","https://openalex.org/W2029745930","https://openalex.org/W2035266068","https://openalex.org/W2035687084","https://openalex.org/W2036890934","https://openalex.org/W2039596618","https://openalex.org/W2040576381","https://openalex.org/W2043617798","https://openalex.org/W2045385459","https://openalex.org/W2047544230","https://openalex.org/W2048626514","https://openalex.org/W2049127379","https://openalex.org/W2050091105","https://openalex.org/W2052464531","https://openalex.org/W2053921780","https://openalex.org/W2054285810","https://openalex.org/W2055981208","https://openalex.org/W2056357865","https://openalex.org/W2062419920","https://openalex.org/W2062663912","https://openalex.org/W2062786004","https://openalex.org/W2063089997","https://openalex.org/W2065627587","https://openalex.org/W2066451762","https://openalex.org/W2067138633","https://openalex.org/W2069458148","https://openalex.org/W2077351642","https://openalex.org/W2084173287","https://openalex.org/W2088713131","https://openalex.org/W2088790008","https://openalex.org/W2094259887","https://openalex.org/W2098504210","https://openalex.org/W2099871694","https://openalex.org/W2105682644","https://openalex.org/W2106140689","https://openalex.org/W2108588173","https://openalex.org/W2109354236","https://openalex.org/W2109387979","https://openalex.org/W2109734459","https://openalex.org/W2110282379","https://openalex.org/W2115458478","https://openalex.org/W2118233996","https://openalex.org/W2123035184","https://openalex.org/W2128934600","https://openalex.org/W2131906067","https://openalex.org/W2138122982","https://openalex.org/W2141704677","https://openalex.org/W2141885858","https://openalex.org/W2144288821","https://openalex.org/W2146228523","https://openalex.org/W2146660498","https://openalex.org/W2147993766","https://openalex.org/W2148457238","https://openalex.org/W2148853951","https://openalex.org/W2149801992","https://openalex.org/W2150269465","https://openalex.org/W2156125289","https://openalex.org/W2156495637","https://openalex.org/W2159794836","https://openalex.org/W2161062388","https://openalex.org/W2164270482","https://openalex.org/W2166478478","https://openalex.org/W2167196260","https://openalex.org/W2168926448","https://openalex.org/W2171873547","https://openalex.org/W4210623056","https://openalex.org/W4245747415","https://openalex.org/W6631828510","https://openalex.org/W6657818778"],"related_works":["https://openalex.org/W3082648488","https://openalex.org/W2766540212","https://openalex.org/W4254358660","https://openalex.org/W2254394724","https://openalex.org/W1991437749","https://openalex.org/W2139419587","https://openalex.org/W2062110035","https://openalex.org/W3021082577","https://openalex.org/W1976596002","https://openalex.org/W2952770773"],"abstract_inverted_index":{"Cysteine":[0,214],"residues":[1,94],"have":[2,115,261],"a":[3,8,16,34,46,53,69,117,164,169,177,222,270],"rich":[4],"chemistry":[5,289],"and":[6,29,88,130,146,257],"play":[7],"critical":[9],"role":[10],"in":[11,83,95,156,168,208,217],"the":[12,59,76,107,139,143,148,152,160,173,199,213,218,229,233,254,258],"catalytic":[13,38,206],"activity":[14],"of":[15,18,36,52,62,127,163,172,202,291],"plethora":[17],"enzymes.":[19],"However,":[20,86],"cysteines":[21],"are":[22],"susceptible":[23],"to":[24,33,99,150,215,238,287],"oxidation":[25,42,74],"by":[26,235,264],"Reactive":[27],"Oxygen":[28],"Nitrogen":[30],"Species,":[31],"leading":[32],"loss":[35],"their":[37],"function.":[39,293],"Therefore,":[40],"cysteine":[41,93],"is":[43,103,183,190,245],"emerging":[44],"as":[45,68,75,196],"relevant":[47],"physiological":[48],"regulatory":[49],"mechanism.":[50],"Formation":[51],"cyclic":[54],"sulfenyl":[55,77,122,153,193],"amide":[56,78,123,154,194],"residue":[57],"at":[58],"active":[60],"site":[61],"redox-regulated":[63],"proteins":[64,97,174,211,267],"has":[65,80],"been":[66,81,262],"proposed":[67],"protection":[70],"mechanism":[71],"against":[72],"irreversible":[73,275],"intermediate":[79,102],"identified":[82,116],"several":[84,209,239],"proteins.":[85],"how":[87,281],"why":[89],"only":[90],"some":[91],"specific":[92],"particular":[96],"react":[98],"form":[100],"this":[101,136],"still":[104],"unknown.":[105],"In":[106],"present":[108,184],"work":[109],"using":[110],"in-silico":[111],"based":[112],"tools,":[113],"we":[114,133,175,251],"constrained":[118],"conformation":[119,137,260],"that":[120,135,189,228,253,268],"accelerates":[121],"formation.":[124],"By":[125],"means":[126],"combined":[128],"MD":[129],"QM/MM":[131],"calculation":[132],"show":[134],"positions":[138],"NH":[140,240],"backbone":[141,241],"towards":[142],"sulfenic":[144,203],"acid":[145],"promotes":[147,198],"reaction":[149],"yield":[151],"intermediate,":[155],"one":[157],"step":[158],"with":[159],"concomitant":[161],"release":[162],"water":[165],"molecule.":[166],"Moreover,":[167],"large":[170],"subset":[171],"found":[176,227],"conserved":[178,230],"beta":[179],"sheet-loop-helix":[180,255],"motif,":[181],"which":[182],"across":[185],"different":[186],"protein":[187,292],"folds,":[188],"key":[191],"for":[192,266],"production":[195],"it":[197],"previous":[200],"formation":[201],"acid.":[204],"For":[205],"activity,":[207],"cases,":[210],"need":[212,269],"be":[216,285],"cysteinate":[219,234,244],"form,":[220],"i.e.":[221],"low":[223],"pKa":[224],"Cys.":[225],"We":[226],"motif":[231,256],"stabilizes":[232],"hydrogen":[236],"bonding":[237],"moieties.":[242],"As":[243],"also":[246,279],"more":[247],"reactive":[248,271],"toward":[249],"ROS":[250],"propose":[252],"constraint":[259],"selected":[263],"evolution":[265],"Cys":[272],"protected":[273],"from":[274],"oxidation.":[276],"Our":[277],"results":[278],"highlight":[280],"fold":[282],"conservation":[283],"can":[284],"correlated":[286],"redox":[288],"regulation":[290]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":2}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
