{"id":"https://openalex.org/W1997787178","doi":"https://doi.org/10.1371/journal.pcbi.1004008","title":"A RESTful API for Accessing Microbial Community Data for MG-RAST","display_name":"A RESTful API for Accessing Microbial Community Data for MG-RAST","publication_year":2015,"publication_date":"2015-01-08","ids":{"openalex":"https://openalex.org/W1997787178","doi":"https://doi.org/10.1371/journal.pcbi.1004008","mag":"1997787178","pmid":"https://pubmed.ncbi.nlm.nih.gov/25569221"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1004008","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004008","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004008&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004008&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027887614","display_name":"Andreas Wilke","orcid":"https://orcid.org/0000-0002-7699-2267"},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]},{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andreas Wilke","raw_affiliation_strings":["Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America; Computation Institute, University of Chicago, Chicago, Illinois, United States of America","Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America","Computation Institute, University of Chicago, Chicago, Illinois, United States of America"],"affiliations":[{"raw_affiliation_string":"Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America; Computation Institute, University of Chicago, Chicago, Illinois, United States of America","institution_ids":[]},{"raw_affiliation_string":"Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, Illinois, United States of America","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108396405","display_name":"Jared Bischof","orcid":null},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jared Bischof","raw_affiliation_strings":["Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America; Computation Institute, University of Chicago, Chicago, Illinois, United States of America","Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America","Computation Institute, University of Chicago, Chicago, Illinois, United States of America"],"affiliations":[{"raw_affiliation_string":"Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America; Computation Institute, University of Chicago, Chicago, Illinois, United States of America","institution_ids":[]},{"raw_affiliation_string":"Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, Illinois, United States of America","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041168268","display_name":"Travis Harrison","orcid":null},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Travis Harrison","raw_affiliation_strings":["Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America; Computation Institute, University of Chicago, Chicago, Illinois, United States of America","Computation Institute, University of Chicago, Chicago, Illinois, United States of America","Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America"],"affiliations":[{"raw_affiliation_string":"Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America; Computation Institute, University of Chicago, Chicago, Illinois, United States of America","institution_ids":[]},{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, Illinois, United States of America","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America","institution_ids":["https://openalex.org/I1282105669"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065672799","display_name":"Tom Brettin","orcid":null},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tom Brettin","raw_affiliation_strings":["Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America"],"affiliations":[{"raw_affiliation_string":"Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America","institution_ids":["https://openalex.org/I1282105669"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113574097","display_name":"Mark D\u2019Souza","orcid":null},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]},{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark D'Souza","raw_affiliation_strings":["Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America; Computation Institute, University of Chicago, Chicago, Illinois, United States of America","Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America","Computation Institute, University of Chicago, Chicago, Illinois, United States of America"],"affiliations":[{"raw_affiliation_string":"Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America; Computation Institute, University of Chicago, Chicago, Illinois, United States of America","institution_ids":[]},{"raw_affiliation_string":"Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, Illinois, United States of America","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054085463","display_name":"Wolfgang Gerlach","orcid":"https://orcid.org/0000-0002-1480-1242"},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wolfgang Gerlach","raw_affiliation_strings":["Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America; Computation Institute, University of Chicago, Chicago, Illinois, United States of America","Computation Institute, University of Chicago, Chicago, Illinois, United States of America","Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America"],"affiliations":[{"raw_affiliation_string":"Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America; Computation Institute, University of Chicago, Chicago, Illinois, United States of America","institution_ids":[]},{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, Illinois, United States of America","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America","institution_ids":["https://openalex.org/I1282105669"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087776857","display_name":"Hunter Matthews","orcid":null},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hunter Matthews","raw_affiliation_strings":["Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America; Computation Institute, University of Chicago, Chicago, Illinois, United States of America","Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America","Computation Institute, University of Chicago, Chicago, Illinois, United States of America"],"affiliations":[{"raw_affiliation_string":"Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America; Computation Institute, University of Chicago, Chicago, Illinois, United States of America","institution_ids":[]},{"raw_affiliation_string":"Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, Illinois, United States of America","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029013346","display_name":"Tobias Paczian","orcid":null},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]},{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tobias Paczian","raw_affiliation_strings":["Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America; Computation Institute, University of Chicago, Chicago, Illinois, United States of America","Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America","Computation Institute, University of Chicago, Chicago, Illinois, United States of America"],"affiliations":[{"raw_affiliation_string":"Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America; Computation Institute, University of Chicago, Chicago, Illinois, United States of America","institution_ids":[]},{"raw_affiliation_string":"Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, Illinois, United States of America","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050332036","display_name":"Jared Wilkening","orcid":null},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]},{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jared Wilkening","raw_affiliation_strings":["Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America; Computation Institute, University of Chicago, Chicago, Illinois, United States of America","Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America","Computation Institute, University of Chicago, Chicago, Illinois, United States of America"],"affiliations":[{"raw_affiliation_string":"Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America; Computation Institute, University of Chicago, Chicago, Illinois, United States of America","institution_ids":[]},{"raw_affiliation_string":"Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, Illinois, United States of America","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111479062","display_name":"Elizabeth M. Glass","orcid":null},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]},{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Elizabeth M. Glass","raw_affiliation_strings":["Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America; Computation Institute, University of Chicago, Chicago, Illinois, United States of America","Computation Institute, University of Chicago, Chicago, Illinois, United States of America","Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America"],"affiliations":[{"raw_affiliation_string":"Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America; Computation Institute, University of Chicago, Chicago, Illinois, United States of America","institution_ids":[]},{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, Illinois, United States of America","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America","institution_ids":["https://openalex.org/I1282105669"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113516752","display_name":"Narayan Desai","orcid":null},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Narayan Desai","raw_affiliation_strings":["Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America; Computation Institute, University of Chicago, Chicago, Illinois, United States of America","Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America","Computation Institute, University of Chicago, Chicago, Illinois, United States of America"],"affiliations":[{"raw_affiliation_string":"Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America; Computation Institute, University of Chicago, Chicago, Illinois, United States of America","institution_ids":[]},{"raw_affiliation_string":"Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, Illinois, United States of America","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086419862","display_name":"Folker Meyer","orcid":"https://orcid.org/0000-0003-1112-2284"},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Folker Meyer","raw_affiliation_strings":["Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America; Computation Institute, University of Chicago, Chicago, Illinois, United States of America","Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America","Computation Institute, University of Chicago, Chicago, Illinois, United States of America"],"affiliations":[{"raw_affiliation_string":"Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America; Computation Institute, University of Chicago, Chicago, Illinois, United States of America","institution_ids":[]},{"raw_affiliation_string":"Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, Illinois, United States of America","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, Illinois, United States of America","institution_ids":["https://openalex.org/I40347166"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5086419862"],"corresponding_institution_ids":["https://openalex.org/I1282105669","https://openalex.org/I40347166"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":4.3767,"has_fulltext":true,"cited_by_count":74,"citation_normalized_percentile":{"value":0.95019325,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"11","issue":"1","first_page":"e1004008","last_page":"e1004008"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7167440056800842},{"id":"https://openalex.org/keywords/application-programming-interface","display_name":"Application programming interface","score":0.6920512318611145},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.62840336561203},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5471871495246887},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.49306532740592957},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.4646695554256439},{"id":"https://openalex.org/keywords/soap","display_name":"SOAP","score":0.44992387294769287},{"id":"https://openalex.org/keywords/json","display_name":"JSON","score":0.44139552116394043},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4196038246154785},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1955619752407074},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.13469171524047852}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7167440056800842},{"id":"https://openalex.org/C99613125","wikidata":"https://www.wikidata.org/wiki/Q165194","display_name":"Application programming interface","level":2,"score":0.6920512318611145},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.62840336561203},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5471871495246887},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.49306532740592957},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.4646695554256439},{"id":"https://openalex.org/C17881449","wikidata":"https://www.wikidata.org/wiki/Q189620","display_name":"SOAP","level":2,"score":0.44992387294769287},{"id":"https://openalex.org/C2780416260","wikidata":"https://www.wikidata.org/wiki/Q2063","display_name":"JSON","level":2,"score":0.44139552116394043},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4196038246154785},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1955619752407074},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.13469171524047852},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1371/journal.pcbi.1004008","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004008","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004008&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:25569221","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25569221","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.778.2144","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.778.2144","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/db/cb/pcbi.1004008.PMC4287624.pdf","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:46e0a4e84f954269980eda5df0a06231","is_oa":true,"landing_page_url":"https://doaj.org/article/46e0a4e84f954269980eda5df0a06231","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 11, Iss 1, p e1004008 (2015)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/1286382","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/_A_RESTful_API_for_Accessing_Microbial_Community_Data_for_MG_RAST_/1286382","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:osti.gov:1212400","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1212400","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:osti.gov:1395022","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1395022","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4287624","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4287624","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1004008","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004008","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004008&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.6200000047683716}],"awards":[{"id":"https://openalex.org/G1015216249","display_name":null,"funder_award_id":"DE-AC02-06CH1135","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1116540683","display_name":null,"funder_award_id":"DE-AC02-06CH11","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G1751644051","display_name":null,"funder_award_id":"DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G1805209620","display_name":null,"funder_award_id":"Contract DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G1844751952","display_name":null,"funder_award_id":"DE-AC02_06CH11357","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G2754454295","display_name":null,"funder_award_id":"DE-AC02-06CH11357.","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G2777053550","display_name":null,"funder_award_id":"AC02-06CH11357","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3000213308","display_name":null,"funder_award_id":"DE-AC02-06CH113","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G3311144436","display_name":null,"funder_award_id":"DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G3801222974","display_name":null,"funder_award_id":"DE-AC02-06CH1135","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4145457401","display_name":null,"funder_award_id":"DE-AC02-06CH113","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G4877169874","display_name":null,"funder_award_id":"DE-AC02-06CH11357.","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G498139845","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G6085113958","display_name":null,"funder_award_id":"E-AC02-06CH11357","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G650626725","display_name":null,"funder_award_id":"E-AC02-06CH11357","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G6558272803","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6699942780","display_name":null,"funder_award_id":"DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6848031779","display_name":null,"funder_award_id":"06CH11357","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6918803902","display_name":null,"funder_award_id":"06CH11357","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G7954425250","display_name":null,"funder_award_id":"DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8143874970","display_name":null,"funder_award_id":"AC02-06CH11357","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G8314672274","display_name":null,"funder_award_id":"DE-AC02-06CH11","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8339731281","display_name":null,"funder_award_id":"UH3 DK083993","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8414908677","display_name":null,"funder_award_id":"DE-AC0","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G878601127","display_name":null,"funder_award_id":"DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320337506","funder_display_name":"Advanced Scientific Computing Research"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320306151","display_name":"Alfred P. Sloan Foundation","ror":"https://ror.org/052csg198"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320337506","display_name":"Advanced Scientific Computing Research","ror":"https://ror.org/0012c7r22"},{"id":"https://openalex.org/F4320337509","display_name":"Biological and Environmental Research","ror":"https://ror.org/0114b2m14"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1997787178.pdf","grobid_xml":"https://content.openalex.org/works/W1997787178.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W1569186605","https://openalex.org/W1989348205","https://openalex.org/W2025002407","https://openalex.org/W2041117131","https://openalex.org/W2046951963","https://openalex.org/W2063984303","https://openalex.org/W2100670078","https://openalex.org/W2107644675","https://openalex.org/W2129687578","https://openalex.org/W2130731460","https://openalex.org/W2136145671","https://openalex.org/W2155545841"],"related_works":["https://openalex.org/W1965927827","https://openalex.org/W344666387","https://openalex.org/W1595475086","https://openalex.org/W4232721010","https://openalex.org/W4268596","https://openalex.org/W2382818050","https://openalex.org/W2372204199","https://openalex.org/W2385088822","https://openalex.org/W2136712263","https://openalex.org/W4200253686"],"abstract_inverted_index":{"Metagenomic":[0],"sequencing":[1,33],"has":[2,18],"produced":[3],"significant":[4],"amounts":[5],"of":[6,14,108,135,165,178,244,251,281],"data":[7,25,55,65,120,122,179,224,234,269],"in":[8,38,49,241,270],"recent":[9],"years.":[10],"For":[11],"example,":[12],"as":[13,60,99,101,130],"summer":[15],"2013,":[16],"MG-RAST":[17,50,81,97,113,127,158,271,283],"been":[19],"used":[20,230],"to":[21,96,180,202,214,232,247,255],"annotate":[22],"over":[23,28],"110,000":[24],"sets":[26],"totaling":[27],"43":[29],"Terabases.":[30],"With":[31],"metagenomic":[32],"finding":[34],"even":[35],"wider":[36],"adoption":[37],"the":[39,42,69,106,126,136,156,163,172,249,252,268,279,282],"scientific":[40],"community,":[41],"existing":[43,157],"web-based":[44],"analysis":[45,62,73,110],"tools":[46,111],"and":[47,57,121,161,198,207,221,235,254],"infrastructure":[48],"provide":[51,256],"limited":[52],"capability":[53],"for":[54,105,151,204,260,272],"retrieval":[56],"analysis,":[58],"such":[59],"comparative":[61],"between":[63],"multiple":[64],"sets.":[66],"Moreover,":[67],"although":[68],"system":[70],"provides":[71,211],"many":[72,222],"tools,":[74],"it":[75],"is":[76,192],"not":[77],"comprehensive.":[78],"By":[79],"opening":[80],"up":[82],"via":[83],"a":[84,103,147,175,186,242,257],"web":[85,148,159],"services":[86,149],"API":[87,117,150,154,173,253,265],"(application":[88],"programmers":[89],"interface)":[90],"we":[91,144,228],"have":[92,145,229],"greatly":[93,277],"expanded":[94],"access":[95,213],"data,":[98,216],"well":[100],"provided":[102,240],"mechanism":[104],"use":[107,203],"third-party":[109],"with":[112,194],"data.":[114],"This":[115,153,182],"RESTful":[116,187],"makes":[118],"all":[119],"objects":[123],"created":[124],"by":[125,274],"pipeline":[128],"accessible":[129],"JSON":[131],"objects.":[132],"As":[133],"part":[134],"DOE":[137],"Systems":[138],"Biology":[139],"Knowledgebase":[140],"project":[141],"(KBase,":[142],"http://kbase.us)":[143],"implemented":[146],"MG-RAST.":[152],"complements":[155],"interface":[160],"constitutes":[162],"basis":[164],"KBase's":[166],"microbial":[167],"community":[168],"capabilities.":[169],"In":[170],"addition,":[171],"exposes":[174,267],"comprehensive":[176,212],"collection":[177],"programmers.":[181],"API,":[183],"which":[184],"uses":[185],"(Representational":[188],"State":[189],"Transfer)":[190],"implementation,":[191],"compatible":[193],"most":[195],"programming":[196],"environments":[197],"should":[199],"be":[200],"easy":[201],"end":[205],"users":[206],"third":[208],"parties.":[209],"It":[210],"sequence":[215],"quality":[217],"control":[218],"results,":[219],"annotations,":[220],"other":[223],"types.":[225],"Where":[226],"feasible,":[227],"standards":[231],"expose":[233],"metadata.":[236],"Code":[237],"examples":[238],"are":[239],"number":[243],"languages":[245],"both":[246],"show":[248],"versatility":[250],"starting":[258],"point":[259],"users.":[261],"We":[262],"present":[263],"an":[264],"that":[266],"consumption":[273],"our":[275],"users,":[276],"enhancing":[278],"utility":[280],"service.":[284]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":11},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":4}],"updated_date":"2026-04-15T08:11:43.952461","created_date":"2025-10-10T00:00:00"}