{"id":"https://openalex.org/W2003993321","doi":"https://doi.org/10.1371/journal.pcbi.1003969","title":"Embryonic Stem Cell Specific \u201cMaster\u201d Replication Origins at the Heart of the Loss of Pluripotency","display_name":"Embryonic Stem Cell Specific \u201cMaster\u201d Replication Origins at the Heart of the Loss of Pluripotency","publication_year":2015,"publication_date":"2015-02-06","ids":{"openalex":"https://openalex.org/W2003993321","doi":"https://doi.org/10.1371/journal.pcbi.1003969","mag":"2003993321","pmid":"https://pubmed.ncbi.nlm.nih.gov/25658386"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1003969","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1003969","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003969&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003969&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036338209","display_name":"Hanna Julienne","orcid":"https://orcid.org/0000-0001-8214-9412"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I113428412","display_name":"\u00c9cole Normale Sup\u00e9rieure de Lyon","ror":"https://ror.org/04zmssz18","country_code":"FR","type":"education","lineage":["https://openalex.org/I113428412","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210096929","display_name":"Laboratoire de Physique de l'ENS de Lyon","ror":"https://ror.org/00w5ay796","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I112936343","https://openalex.org/I113428412","https://openalex.org/I113428412","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I4210096929","https://openalex.org/I4405259976","https://openalex.org/I4405263940","https://openalex.org/I48430043"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Hanna Julienne","raw_affiliation_strings":["Universit\u00e9 de Lyon, Lyon, France; Laboratoire de Physique, CNRS UMR 5672, Ecole Normale Sup\u00e9rieure de Lyon, Lyon, France","Laboratoire de Physique, CNRS UMR 5672, Ecole Normale Sup\u00e9rieure de Lyon, Lyon, France","Universit\u00e9 de Lyon, Lyon, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Lyon, Lyon, France; Laboratoire de Physique, CNRS UMR 5672, Ecole Normale Sup\u00e9rieure de Lyon, Lyon, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I113428412","https://openalex.org/I1294671590","https://openalex.org/I4210096929"]},{"raw_affiliation_string":"Laboratoire de Physique, CNRS UMR 5672, Ecole Normale Sup\u00e9rieure de Lyon, Lyon, France","institution_ids":["https://openalex.org/I113428412","https://openalex.org/I1294671590","https://openalex.org/I4210096929"]},{"raw_affiliation_string":"Universit\u00e9 de Lyon, Lyon, France","institution_ids":["https://openalex.org/I100532134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046565506","display_name":"Benjamin Audit","orcid":"https://orcid.org/0000-0003-2683-9990"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I113428412","display_name":"\u00c9cole Normale Sup\u00e9rieure de Lyon","ror":"https://ror.org/04zmssz18","country_code":"FR","type":"education","lineage":["https://openalex.org/I113428412","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210096929","display_name":"Laboratoire de Physique de l'ENS de Lyon","ror":"https://ror.org/00w5ay796","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I112936343","https://openalex.org/I113428412","https://openalex.org/I113428412","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I4210096929","https://openalex.org/I4405259976","https://openalex.org/I4405263940","https://openalex.org/I48430043"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Benjamin Audit","raw_affiliation_strings":["Universit\u00e9 de Lyon, Lyon, France; Laboratoire de Physique, CNRS UMR 5672, Ecole Normale Sup\u00e9rieure de Lyon, Lyon, France","Laboratoire de Physique, CNRS UMR 5672, Ecole Normale Sup\u00e9rieure de Lyon, Lyon, France","Universit\u00e9 de Lyon, Lyon, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Lyon, Lyon, France; Laboratoire de Physique, CNRS UMR 5672, Ecole Normale Sup\u00e9rieure de Lyon, Lyon, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I113428412","https://openalex.org/I1294671590","https://openalex.org/I4210096929"]},{"raw_affiliation_string":"Laboratoire de Physique, CNRS UMR 5672, Ecole Normale Sup\u00e9rieure de Lyon, Lyon, France","institution_ids":["https://openalex.org/I113428412","https://openalex.org/I1294671590","https://openalex.org/I4210096929"]},{"raw_affiliation_string":"Universit\u00e9 de Lyon, Lyon, France","institution_ids":["https://openalex.org/I100532134"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023201158","display_name":"A. Arn\u00e9odo","orcid":"https://orcid.org/0000-0002-3690-2108"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I113428412","display_name":"\u00c9cole Normale Sup\u00e9rieure de Lyon","ror":"https://ror.org/04zmssz18","country_code":"FR","type":"education","lineage":["https://openalex.org/I113428412","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210096929","display_name":"Laboratoire de Physique de l'ENS de Lyon","ror":"https://ror.org/00w5ay796","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I112936343","https://openalex.org/I113428412","https://openalex.org/I113428412","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I4210096929","https://openalex.org/I4405259976","https://openalex.org/I4405263940","https://openalex.org/I48430043"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Alain Arneodo","raw_affiliation_strings":["Universit\u00e9 de Lyon, Lyon, France; Laboratoire de Physique, CNRS UMR 5672, Ecole Normale Sup\u00e9rieure de Lyon, Lyon, France","Laboratoire de Physique, CNRS UMR 5672, Ecole Normale Sup\u00e9rieure de Lyon, Lyon, France","Universit\u00e9 de Lyon, Lyon, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Lyon, Lyon, France; Laboratoire de Physique, CNRS UMR 5672, Ecole Normale Sup\u00e9rieure de Lyon, Lyon, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I113428412","https://openalex.org/I1294671590","https://openalex.org/I4210096929"]},{"raw_affiliation_string":"Laboratoire de Physique, CNRS UMR 5672, Ecole Normale Sup\u00e9rieure de Lyon, Lyon, France","institution_ids":["https://openalex.org/I113428412","https://openalex.org/I1294671590","https://openalex.org/I4210096929"]},{"raw_affiliation_string":"Universit\u00e9 de Lyon, Lyon, France","institution_ids":["https://openalex.org/I100532134"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5023201158","https://openalex.org/A5046565506"],"corresponding_institution_ids":["https://openalex.org/I100532134","https://openalex.org/I113428412","https://openalex.org/I1294671590","https://openalex.org/I4210096929"],"apc_list":{"value":3043,"currency":"USD","value_usd":3043},"apc_paid":{"value":3043,"currency":"USD","value_usd":3043},"fwci":1.9263,"has_fulltext":true,"cited_by_count":24,"citation_normalized_percentile":{"value":0.85833464,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"11","issue":"2","first_page":"e1003969","last_page":"e1003969"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10505","display_name":"Pluripotent Stem Cells Research","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10505","display_name":"Pluripotent Stem Cells Research","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12140","display_name":"Renal and related cancers","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.7846382856369019},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7534691095352173},{"id":"https://openalex.org/keywords/heterochromatin","display_name":"Heterochromatin","score":0.6494218707084656},{"id":"https://openalex.org/keywords/epigenetics","display_name":"Epigenetics","score":0.630974531173706},{"id":"https://openalex.org/keywords/homeobox-protein-nanog","display_name":"Homeobox protein NANOG","score":0.5233187675476074},{"id":"https://openalex.org/keywords/somatic-cell","display_name":"Somatic cell","score":0.5212005972862244},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5146278142929077},{"id":"https://openalex.org/keywords/polycomb-group-proteins","display_name":"Polycomb-group proteins","score":0.5115795731544495},{"id":"https://openalex.org/keywords/histone","display_name":"Histone","score":0.497344046831131},{"id":"https://openalex.org/keywords/bivalent-chromatin","display_name":"Bivalent chromatin","score":0.4836815297603607},{"id":"https://openalex.org/keywords/induced-pluripotent-stem-cell","display_name":"Induced pluripotent stem cell","score":0.4618259072303772},{"id":"https://openalex.org/keywords/embryonic-stem-cell","display_name":"Embryonic stem cell","score":0.4586060643196106},{"id":"https://openalex.org/keywords/replication-timing","display_name":"Replication timing","score":0.4303123950958252},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.3415878713130951},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2829499840736389},{"id":"https://openalex.org/keywords/histone-h1","display_name":"Histone H1","score":0.2654607892036438},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.2170061469078064}],"concepts":[{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.7846382856369019},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7534691095352173},{"id":"https://openalex.org/C103435993","wikidata":"https://www.wikidata.org/wiki/Q837783","display_name":"Heterochromatin","level":4,"score":0.6494218707084656},{"id":"https://openalex.org/C41091548","wikidata":"https://www.wikidata.org/wiki/Q26939","display_name":"Epigenetics","level":3,"score":0.630974531173706},{"id":"https://openalex.org/C207701140","wikidata":"https://www.wikidata.org/wiki/Q420522","display_name":"Homeobox protein NANOG","level":5,"score":0.5233187675476074},{"id":"https://openalex.org/C134305767","wikidata":"https://www.wikidata.org/wiki/Q725508","display_name":"Somatic cell","level":3,"score":0.5212005972862244},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5146278142929077},{"id":"https://openalex.org/C2777116130","wikidata":"https://www.wikidata.org/wiki/Q4082046","display_name":"Polycomb-group proteins","level":5,"score":0.5115795731544495},{"id":"https://openalex.org/C64927066","wikidata":"https://www.wikidata.org/wiki/Q36293","display_name":"Histone","level":3,"score":0.497344046831131},{"id":"https://openalex.org/C137338518","wikidata":"https://www.wikidata.org/wiki/Q4919210","display_name":"Bivalent chromatin","level":5,"score":0.4836815297603607},{"id":"https://openalex.org/C107459253","wikidata":"https://www.wikidata.org/wiki/Q674925","display_name":"Induced pluripotent stem cell","level":4,"score":0.4618259072303772},{"id":"https://openalex.org/C145103041","wikidata":"https://www.wikidata.org/wiki/Q1151519","display_name":"Embryonic stem cell","level":3,"score":0.4586060643196106},{"id":"https://openalex.org/C2778512757","wikidata":"https://www.wikidata.org/wiki/Q7314076","display_name":"Replication timing","level":4,"score":0.4303123950958252},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.3415878713130951},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2829499840736389},{"id":"https://openalex.org/C101152365","wikidata":"https://www.wikidata.org/wiki/Q838135","display_name":"Histone H1","level":4,"score":0.2654607892036438},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.2170061469078064},{"id":"https://openalex.org/C158448853","wikidata":"https://www.wikidata.org/wiki/Q425218","display_name":"Repressor","level":4,"score":0.0}],"mesh":[{"descriptor_ui":"D002454","descriptor_name":"Cell Differentiation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002454","descriptor_name":"Cell Differentiation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002454","descriptor_name":"Cell Differentiation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006657","descriptor_name":"Histones","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006657","descriptor_name":"Histones","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006657","descriptor_name":"Histones","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006657","descriptor_name":"Histones","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006657","descriptor_name":"Histones","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006657","descriptor_name":"Histones","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006657","descriptor_name":"Histones","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006657","descriptor_name":"Histones","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006657","descriptor_name":"Histones","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018741","descriptor_name":"Replication Origin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018741","descriptor_name":"Replication Origin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018741","descriptor_name":"Replication Origin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053595","descriptor_name":"Embryonic Stem Cells","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D053595","descriptor_name":"Embryonic Stem Cells","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D053595","descriptor_name":"Embryonic Stem Cells","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1003969","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1003969","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003969&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:25658386","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25658386","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4319821","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4319821","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:HAL:hal-01557072v1","is_oa":true,"landing_page_url":"https://hal.science/hal-01557072","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, 2015, 11 (2), pp.38. &#x27E8;10.1371/journal.pcbi.1003969&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:365953e6bb5b4adaa2bd30d94bc8637d","is_oa":false,"landing_page_url":"https://doaj.org/article/365953e6bb5b4adaa2bd30d94bc8637d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 11, Iss 2, p e1003969 (2015)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/1302147","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/_Embryonic_Stem_Cell_Specific_8220_Master_8221_Replication_Origins_at_the_Heart_of_the_Loss_of_Pluripotency_/1302147","pdf_url":null,"source":{"id":"https://openalex.org/S4306402621","display_name":"INDIGO (University of Illinois at Chicago)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I39422238","host_organization_name":"University of Illinois Chicago","host_organization_lineage":["https://openalex.org/I39422238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1003969","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1003969","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003969&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"No poverty","score":0.800000011920929,"id":"https://metadata.un.org/sdg/1"}],"awards":[{"id":"https://openalex.org/G2015969730","display_name":"Spatiotemporal program of replication of the human genome","funder_award_id":"ANR-10-BLAN-1615","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320322892","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2003993321.pdf","grobid_xml":"https://content.openalex.org/works/W2003993321.grobid-xml"},"referenced_works_count":187,"referenced_works":["https://openalex.org/W183117647","https://openalex.org/W294504669","https://openalex.org/W1528728961","https://openalex.org/W1555438418","https://openalex.org/W1821811819","https://openalex.org/W1842518212","https://openalex.org/W1851394852","https://openalex.org/W1938812606","https://openalex.org/W1968318999","https://openalex.org/W1968574736","https://openalex.org/W1968637358","https://openalex.org/W1968931043","https://openalex.org/W1970722699","https://openalex.org/W1972114552","https://openalex.org/W1973279069","https://openalex.org/W1977305809","https://openalex.org/W1977996760","https://openalex.org/W1978489297","https://openalex.org/W1979245454","https://openalex.org/W1980870904","https://openalex.org/W1981437154","https://openalex.org/W1983439231","https://openalex.org/W1983461014","https://openalex.org/W1983494917","https://openalex.org/W1984249881","https://openalex.org/W1984285688","https://openalex.org/W1987971958","https://openalex.org/W1990226916","https://openalex.org/W1992213480","https://openalex.org/W1992307021","https://openalex.org/W1993570130","https://openalex.org/W1995496004","https://openalex.org/W1997378173","https://openalex.org/W2000384908","https://openalex.org/W2000830981","https://openalex.org/W2002781605","https://openalex.org/W2005290796","https://openalex.org/W2005673755","https://openalex.org/W2007807048","https://openalex.org/W2008486131","https://openalex.org/W2009065172","https://openalex.org/W2010790480","https://openalex.org/W2013340257","https://openalex.org/W2015416439","https://openalex.org/W2017840637","https://openalex.org/W2018760184","https://openalex.org/W2024515529","https://openalex.org/W2029388127","https://openalex.org/W2029722028","https://openalex.org/W2029821231","https://openalex.org/W2030523067","https://openalex.org/W2030665161","https://openalex.org/W2030948026","https://openalex.org/W2033421234","https://openalex.org/W2035659472","https://openalex.org/W2036475318","https://openalex.org/W2036824884","https://openalex.org/W2041860345","https://openalex.org/W2042249135","https://openalex.org/W2042439225","https://openalex.org/W2042633640","https://openalex.org/W2049070625","https://openalex.org/W2051045527","https://openalex.org/W2054748846","https://openalex.org/W2055327776","https://openalex.org/W2056298514","https://openalex.org/W2056482755","https://openalex.org/W2057709893","https://openalex.org/W2058622161","https://openalex.org/W2064297857","https://openalex.org/W2067724937","https://openalex.org/W2068289873","https://openalex.org/W2070021921","https://openalex.org/W2070046136","https://openalex.org/W2071699739","https://openalex.org/W2075863343","https://openalex.org/W2076950513","https://openalex.org/W2078336790","https://openalex.org/W2078526277","https://openalex.org/W2079599988","https://openalex.org/W2083278169","https://openalex.org/W2083886963","https://openalex.org/W2084160423","https://openalex.org/W2084811431","https://openalex.org/W2086645776","https://openalex.org/W2087209125","https://openalex.org/W2087909839","https://openalex.org/W2089118500","https://openalex.org/W2090037139","https://openalex.org/W2091151146","https://openalex.org/W2095491090","https://openalex.org/W2095560405","https://openalex.org/W2096083625","https://openalex.org/W2096254048","https://openalex.org/W2098549100","https://openalex.org/W2101412414","https://openalex.org/W2102056802","https://openalex.org/W2106130068","https://openalex.org/W2107575419","https://openalex.org/W2108241558","https://openalex.org/W2109176256","https://openalex.org/W2112156060","https://openalex.org/W2114536076","https://openalex.org/W2114722680","https://openalex.org/W2117792884","https://openalex.org/W2118683755","https://openalex.org/W2120060263","https://openalex.org/W2120718521","https://openalex.org/W2121656741","https://openalex.org/W2124514674","https://openalex.org/W2124696903","https://openalex.org/W2125397535","https://openalex.org/W2125734502","https://openalex.org/W2129924706","https://openalex.org/W2130350241","https://openalex.org/W2130808015","https://openalex.org/W2134087142","https://openalex.org/W2136247993","https://openalex.org/W2136724873","https://openalex.org/W2137947368","https://openalex.org/W2138977668","https://openalex.org/W2140301715","https://openalex.org/W2142046859","https://openalex.org/W2142603647","https://openalex.org/W2143922456","https://openalex.org/W2144141448","https://openalex.org/W2144328273","https://openalex.org/W2147700029","https://openalex.org/W2150437854","https://openalex.org/W2150677967","https://openalex.org/W2150733855","https://openalex.org/W2151821895","https://openalex.org/W2152070513","https://openalex.org/W2153016401","https://openalex.org/W2153087859","https://openalex.org/W2153643905","https://openalex.org/W2154431984","https://openalex.org/W2155149522","https://openalex.org/W2155527226","https://openalex.org/W2156361395","https://openalex.org/W2157251845","https://openalex.org/W2159342107","https://openalex.org/W2159479483","https://openalex.org/W2161224111","https://openalex.org/W2161435642","https://openalex.org/W2162362951","https://openalex.org/W2167250543","https://openalex.org/W2168909179","https://openalex.org/W2169047304","https://openalex.org/W2170079803","https://openalex.org/W2259938310","https://openalex.org/W2313413464","https://openalex.org/W2315891872","https://openalex.org/W2317756796","https://openalex.org/W2326802450","https://openalex.org/W2492307518","https://openalex.org/W2999729612","https://openalex.org/W3158750023","https://openalex.org/W4233112565","https://openalex.org/W4249780895","https://openalex.org/W4255607714","https://openalex.org/W4297932482","https://openalex.org/W4298856955","https://openalex.org/W4298882835","https://openalex.org/W4301130615","https://openalex.org/W4301879524","https://openalex.org/W6607451195","https://openalex.org/W6638947361","https://openalex.org/W6646481866","https://openalex.org/W6651104899","https://openalex.org/W6652263441","https://openalex.org/W6652518559","https://openalex.org/W6658020537","https://openalex.org/W6659208028","https://openalex.org/W6669256757","https://openalex.org/W6670196961","https://openalex.org/W6671468445","https://openalex.org/W6671638098","https://openalex.org/W6675671471","https://openalex.org/W6678470383","https://openalex.org/W6680149145","https://openalex.org/W6680666979","https://openalex.org/W6682186191","https://openalex.org/W6684463743","https://openalex.org/W7019129576","https://openalex.org/W7073535576","https://openalex.org/W7073581965"],"related_works":["https://openalex.org/W2998841025","https://openalex.org/W2988704258","https://openalex.org/W1979289729","https://openalex.org/W3013628633","https://openalex.org/W2341512691","https://openalex.org/W2790045415","https://openalex.org/W2083755988","https://openalex.org/W2137121008","https://openalex.org/W1976946954","https://openalex.org/W2072035127"],"abstract_inverted_index":{"Epigenetic":[0],"regulation":[1],"of":[2,18,27,93,103,112,125,149,162,171,193],"the":[3,40,48,104,110,183,191],"replication":[4,153],"program":[5],"during":[6,156],"mammalian":[7],"cell":[8,36,51,55],"differentiation":[9,157],"remains":[10],"poorly":[11],"understood.":[12],"We":[13],"performed":[14],"an":[15,165],"integrative":[16],"analysis":[17],"eleven":[19],"genome-wide":[20],"epigenetic":[21],"profiles":[22],"at":[23,109],"100":[24],"kb":[25],"resolution":[26],"Mean":[28],"Replication":[29],"Timing":[30],"(MRT)":[31],"data":[32],"in":[33,42,134,167],"six":[34],"human":[35],"lines.":[37],"Compared":[38],"to":[39,70,159],"organization":[41],"four":[43],"chromatin":[44,66,86,187],"states":[45],"shared":[46],"by":[47],"five":[49],"somatic":[50],"lines,":[52],"embryonic":[53],"stem":[54],"(ESC)":[56],"line":[57],"H1":[58],"displays":[59],"(i)":[60],"a":[61,76,83,94,160,179],"gene-poor":[62],"but":[63],"highly":[64],"dynamic":[65],"state":[67,79,87],"(EC4)":[68],"associated":[69],"histone":[71],"variant":[72],"H2AZ":[73,163],"rather":[74],"than":[75],"HP1-associated":[77],"heterochromatin":[78,96],"(C4)":[80],"and":[81,139,145,164,195],"(ii)":[82],"mid-S":[84],"accessible":[85],"with":[88],"bivalent":[89],"gene":[90,146],"marks":[91],"instead":[92],"polycomb-repressed":[95],"state.":[97],"Plastic":[98],"MRT":[99],"regions":[100,132],"(\u2272":[101],"20%":[102],"genome)":[105],"are":[106,120,129],"predominantly":[107],"localized":[108],"borders":[111,119,128],"U-shaped":[113],"timing":[114],"domains.":[115],"Whereas":[116],"somatic-specific":[117],"U-domain":[118,127],"gene-dense":[121],"GC-rich":[122],"regions,":[123],"31.6%":[124],"H1-specific":[126],"early":[130],"EC4":[131],"enriched":[133],"pluripotency":[135,194],"transcription":[136],"factors":[137],"NANOG":[138],"OCT4":[140],"despite":[141],"being":[142],"GC":[143],"poor":[144],"deserts.":[147],"Silencing":[148],"these":[150],"ESC-specific":[151],"\"master\"":[152],"initiation":[154],"zones":[155],"corresponds":[158],"loss":[161,192],"enrichment":[166],"H3K9me3":[168],"mark":[169],"characteristic":[170],"late":[172],"replicating":[173],"C4":[174],"heterochromatin.":[175],"These":[176],"results":[177],"shed":[178],"new":[180],"light":[181],"on":[182],"epigenetically":[184],"regulated":[185],"global":[186],"reorganization":[188],"that":[189],"underlies":[190],"lineage":[196],"commitment.":[197]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
