{"id":"https://openalex.org/W2080641060","doi":"https://doi.org/10.1371/journal.pcbi.1003698","title":"Regulation of the Nucleosome Repeat Length In Vivo by the DNA Sequence, Protein Concentrations and Long-Range Interactions","display_name":"Regulation of the Nucleosome Repeat Length In Vivo by the DNA Sequence, Protein Concentrations and Long-Range Interactions","publication_year":2014,"publication_date":"2014-07-03","ids":{"openalex":"https://openalex.org/W2080641060","doi":"https://doi.org/10.1371/journal.pcbi.1003698","mag":"2080641060","pmid":"https://pubmed.ncbi.nlm.nih.gov/24992723"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1003698","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1003698","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003698&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003698&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015054953","display_name":"Daria A. Beshnova","orcid":"https://orcid.org/0000-0002-2032-9933"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I4210151100","display_name":"DKFZ-ZMBH Alliance","ror":"https://ror.org/05x8b4491","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529","https://openalex.org/I223822909","https://openalex.org/I4210151100"]},{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Daria A. Beshnova","raw_affiliation_strings":["Deutsches Krebsforschungszentrum (DKFZ) and BioQuant, Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"Deutsches Krebsforschungszentrum (DKFZ) and BioQuant, Heidelberg, Germany","institution_ids":["https://openalex.org/I4210151100","https://openalex.org/I17937529","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000538495","display_name":"Andrey G. Cherstvy","orcid":"https://orcid.org/0000-0002-0516-9900"},"institutions":[{"id":"https://openalex.org/I176453806","display_name":"University of Potsdam","ror":"https://ror.org/03bnmw459","country_code":"DE","type":"education","lineage":["https://openalex.org/I176453806"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andrey G. Cherstvy","raw_affiliation_strings":["Institute for Physics and Astronomy, University of Potsdam, Potsdam-Golm, Germany","Institute for Physics and Astronomy, University of Potsdam,Potsdam-Golm,Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Physics and Astronomy, University of Potsdam, Potsdam-Golm, Germany","institution_ids":["https://openalex.org/I176453806"]},{"raw_affiliation_string":"Institute for Physics and Astronomy, University of Potsdam,Potsdam-Golm,Germany","institution_ids":["https://openalex.org/I176453806"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081411933","display_name":"Yevhen Vainshtein","orcid":"https://orcid.org/0000-0001-7944-8892"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I4210151100","display_name":"DKFZ-ZMBH Alliance","ror":"https://ror.org/05x8b4491","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529","https://openalex.org/I223822909","https://openalex.org/I4210151100"]},{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Yevhen Vainshtein","raw_affiliation_strings":["Deutsches Krebsforschungszentrum (DKFZ) and BioQuant, Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"Deutsches Krebsforschungszentrum (DKFZ) and BioQuant, Heidelberg, Germany","institution_ids":["https://openalex.org/I4210151100","https://openalex.org/I17937529","https://openalex.org/I223822909"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048504577","display_name":"Vladimir B. Teif","orcid":"https://orcid.org/0000-0002-5931-7534"},"institutions":[{"id":"https://openalex.org/I4210151100","display_name":"DKFZ-ZMBH Alliance","ror":"https://ror.org/05x8b4491","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529","https://openalex.org/I223822909","https://openalex.org/I4210151100"]},{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Vladimir B. Teif","raw_affiliation_strings":["Deutsches Krebsforschungszentrum (DKFZ) and BioQuant, Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"Deutsches Krebsforschungszentrum (DKFZ) and BioQuant, Heidelberg, Germany","institution_ids":["https://openalex.org/I4210151100","https://openalex.org/I17937529","https://openalex.org/I223822909"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5048504577"],"corresponding_institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909","https://openalex.org/I4210151100"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":6.2538,"has_fulltext":true,"cited_by_count":115,"citation_normalized_percentile":{"value":0.97344371,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"10","issue":"7","first_page":"e1003698","last_page":"e1003698"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/nucleosome","display_name":"Nucleosome","score":0.8637099266052246},{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.6958886981010437},{"id":"https://openalex.org/keywords/histone","display_name":"Histone","score":0.6834863424301147},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5859993696212769},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.556201159954071},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5212262868881226},{"id":"https://openalex.org/keywords/linker-dna","display_name":"Linker DNA","score":0.4959898889064789},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4796321988105774},{"id":"https://openalex.org/keywords/centromere","display_name":"Centromere","score":0.46222200989723206},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4323650598526001},{"id":"https://openalex.org/keywords/epigenetics","display_name":"Epigenetics","score":0.4260065257549286},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.36011558771133423},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19151881337165833},{"id":"https://openalex.org/keywords/chromosome","display_name":"Chromosome","score":0.13020125031471252}],"concepts":[{"id":"https://openalex.org/C84772758","wikidata":"https://www.wikidata.org/wiki/Q271794","display_name":"Nucleosome","level":4,"score":0.8637099266052246},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.6958886981010437},{"id":"https://openalex.org/C64927066","wikidata":"https://www.wikidata.org/wiki/Q36293","display_name":"Histone","level":3,"score":0.6834863424301147},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5859993696212769},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.556201159954071},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5212262868881226},{"id":"https://openalex.org/C193646685","wikidata":"https://www.wikidata.org/wiki/Q1826830","display_name":"Linker DNA","level":5,"score":0.4959898889064789},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4796321988105774},{"id":"https://openalex.org/C63491729","wikidata":"https://www.wikidata.org/wiki/Q14762596","display_name":"Centromere","level":4,"score":0.46222200989723206},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4323650598526001},{"id":"https://openalex.org/C41091548","wikidata":"https://www.wikidata.org/wiki/Q26939","display_name":"Epigenetics","level":3,"score":0.4260065257549286},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36011558771133423},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19151881337165833},{"id":"https://openalex.org/C30481170","wikidata":"https://www.wikidata.org/wiki/Q37748","display_name":"Chromosome","level":3,"score":0.13020125031471252}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001001","descriptor_name":"Anura","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001001","descriptor_name":"Anura","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001001","descriptor_name":"Anura","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001001","descriptor_name":"Anura","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006657","descriptor_name":"Histones","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006657","descriptor_name":"Histones","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006657","descriptor_name":"Histones","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006657","descriptor_name":"Histones","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006657","descriptor_name":"Histones","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006657","descriptor_name":"Histones","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006657","descriptor_name":"Histones","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006657","descriptor_name":"Histones","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009707","descriptor_name":"Nucleosomes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009707","descriptor_name":"Nucleosomes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009707","descriptor_name":"Nucleosomes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009707","descriptor_name":"Nucleosomes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009707","descriptor_name":"Nucleosomes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009707","descriptor_name":"Nucleosomes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009707","descriptor_name":"Nucleosomes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009707","descriptor_name":"Nucleosomes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015003","descriptor_name":"Yeasts","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015003","descriptor_name":"Yeasts","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015003","descriptor_name":"Yeasts","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015003","descriptor_name":"Yeasts","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1003698","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1003698","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003698&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:24992723","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24992723","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:ebc23174d96d495bb57b84d82629d730","is_oa":true,"landing_page_url":"https://doaj.org/article/ebc23174d96d495bb57b84d82629d730","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 10, Iss 7, p e1003698 (2014)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/1092906","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Regulation_of_the_Nucleosome_Repeat_Length_In_Vivo_by_the_DNA_Sequence_Protein_Concentrations_and_Long_Range_Interactions/1092906","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:kobv.de-opus4-uni-potsdam:37736","is_oa":false,"landing_page_url":"https://publishup.uni-potsdam.de/frontdoor/index/index/docId/37736","pdf_url":null,"source":{"id":"https://openalex.org/S4306400594","display_name":"publish.UP (University of Potsdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I176453806","host_organization_name":"University of Potsdam","host_organization_lineage":["https://openalex.org/I176453806"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4081033","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4081033","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1003698","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1003698","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003698&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.6700000166893005,"display_name":"Life in Land"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320310693","display_name":"Deutsches Krebsforschungszentrum","ror":"https://ror.org/04cdgtt98"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2080641060.pdf","grobid_xml":"https://content.openalex.org/works/W2080641060.grobid-xml"},"referenced_works_count":87,"referenced_works":["https://openalex.org/W1534529067","https://openalex.org/W1539997330","https://openalex.org/W1573199447","https://openalex.org/W1970434645","https://openalex.org/W1970516552","https://openalex.org/W1970582146","https://openalex.org/W1974731546","https://openalex.org/W1979550820","https://openalex.org/W1979949585","https://openalex.org/W1983159345","https://openalex.org/W1987034853","https://openalex.org/W1989162095","https://openalex.org/W1989651677","https://openalex.org/W1992031919","https://openalex.org/W1993646828","https://openalex.org/W1998585977","https://openalex.org/W2000329473","https://openalex.org/W2001936578","https://openalex.org/W2002613271","https://openalex.org/W2004469916","https://openalex.org/W2005282195","https://openalex.org/W2005450410","https://openalex.org/W2011884978","https://openalex.org/W2013340257","https://openalex.org/W2013571070","https://openalex.org/W2017162289","https://openalex.org/W2024280474","https://openalex.org/W2024447590","https://openalex.org/W2028008996","https://openalex.org/W2029821231","https://openalex.org/W2029873987","https://openalex.org/W2032625442","https://openalex.org/W2039772480","https://openalex.org/W2041102576","https://openalex.org/W2041303456","https://openalex.org/W2042930277","https://openalex.org/W2043009382","https://openalex.org/W2044976574","https://openalex.org/W2062514148","https://openalex.org/W2068674173","https://openalex.org/W2070271523","https://openalex.org/W2070570223","https://openalex.org/W2081962691","https://openalex.org/W2082123987","https://openalex.org/W2094950254","https://openalex.org/W2101399274","https://openalex.org/W2102136017","https://openalex.org/W2103677726","https://openalex.org/W2104480389","https://openalex.org/W2107432248","https://openalex.org/W2109157139","https://openalex.org/W2111337030","https://openalex.org/W2111846924","https://openalex.org/W2122107851","https://openalex.org/W2122579403","https://openalex.org/W2122828334","https://openalex.org/W2123275894","https://openalex.org/W2124265776","https://openalex.org/W2124376559","https://openalex.org/W2124985265","https://openalex.org/W2128377942","https://openalex.org/W2131503424","https://openalex.org/W2136144150","https://openalex.org/W2137647744","https://openalex.org/W2141991853","https://openalex.org/W2144123178","https://openalex.org/W2145379834","https://openalex.org/W2145706106","https://openalex.org/W2149683434","https://openalex.org/W2149917410","https://openalex.org/W2150677967","https://openalex.org/W2154109129","https://openalex.org/W2154507579","https://openalex.org/W2157366872","https://openalex.org/W2158252183","https://openalex.org/W2161634469","https://openalex.org/W2162616580","https://openalex.org/W2165434074","https://openalex.org/W2312804350","https://openalex.org/W2416764700","https://openalex.org/W2470470117","https://openalex.org/W3037842478","https://openalex.org/W3099544432","https://openalex.org/W4233142541","https://openalex.org/W4247418383","https://openalex.org/W6668231646","https://openalex.org/W6764384684"],"related_works":["https://openalex.org/W2062514148","https://openalex.org/W2042450235","https://openalex.org/W2063259914","https://openalex.org/W2024605487","https://openalex.org/W4213216609","https://openalex.org/W3118167814","https://openalex.org/W2062722074","https://openalex.org/W2092186136","https://openalex.org/W2004767437","https://openalex.org/W2910580209"],"abstract_inverted_index":{"The":[0],"nucleosome":[1,211,245,251,263],"repeat":[2],"length":[3],"(NRL)":[4],"is":[5,57,126],"an":[6,67,127],"integral":[7],"chromatin":[8,33],"property":[9],"important":[10],"for":[11,104],"its":[12],"biological":[13],"functions.":[14],"Recent":[15],"experiments":[16],"revealed":[17],"several":[18,185],"conflicting":[19],"trends":[20],"of":[21,28,46,51,89,132,162,187,194,207,209,221,223,226,262],"the":[22,26,105,120,133,150,163,195,205,210,219,227],"NRL":[23,47,83,106,125,151,164,196],"dependence":[24,165],"on":[25,149,166,171],"concentrations":[27,168],"histones":[29],"and":[30,38,54,70,113,253],"other":[31],"architectural":[32,143],"proteins,":[34],"both":[35],"in":[36,39,73,95],"vitro":[37],"vivo,":[40],"but":[41,129],"a":[42,49,87,101,256],"systematic":[43],"theoretical":[44],"description":[45],"as":[48,86,99],"function":[50,88,131],"DNA":[52,173,229],"sequence":[53],"epigenetic":[55],"determinants":[56],"currently":[58],"lacking.":[59],"To":[60],"address":[61],"this":[62],"problem,":[63],"we":[64,157,234],"have":[65,248],"performed":[66],"integrative":[68],"biophysical":[69],"bioinformatics":[71],"analysis":[72,202],"species":[74],"ranging":[75],"from":[76],"yeast":[77],"to":[78,80,153],"frog":[79],"mouse":[81,238],"where":[82],"was":[84],"studied":[85],"various":[90],"parameters.":[91],"We":[92,183],"show":[93,235],"that":[94,159,204,236],"simple":[96],"eukaryotes":[97],"such":[98],"yeast,":[100],"lower":[102],"limit":[103,122],"value":[107],"exists,":[108],"determined":[109],"by":[110],"internucleosome":[111],"interactions":[112],"remodeler":[114],"action.":[115],"For":[116],"higher":[117],"eukaryotes,":[118],"also":[119],"upper":[121],"exists":[123],"since":[124],"increasing":[128],"saturating":[130],"linker":[134],"histone":[135,167],"concentration.":[136],"Counterintuitively,":[137],"smaller":[138],"H1":[139],"variants":[140],"or":[141,180],"non-histone":[142],"proteins":[144],"can":[145,254],"initiate":[146],"larger":[147],"effects":[148,175,179],"due":[152],"entropic":[154],"reasons.":[155],"Furthermore,":[156],"demonstrate":[158],"different":[160,192],"regimes":[161,193],"exist":[169],"depending":[170],"whether":[172],"sequence-specific":[174],"dominate":[176],"over":[177],"boundary":[178],"vice":[181],"versa.":[182],"consider":[184],"classes":[186],"genomic":[188],"regions":[189],"with":[190,218],"apparently":[191],"variation.":[197],"As":[198],"one":[199],"extreme,":[200,233],"our":[201],"reveals":[203],"period":[206,220],"oscillations":[208,222],"density":[212],"around":[213],"bound":[214],"RNA":[215],"polymerase":[216],"coincides":[217],"positioning":[224],"sites":[225],"corresponding":[228],"sequence.":[230],"At":[231],"another":[232],"although":[237],"major":[239],"satellite":[240],"repeats":[241],"intrinsically":[242],"encode":[243],"well-defined":[244],"preferences,":[246],"they":[247],"no":[249],"unique":[250],"arrangement":[252],"undergo":[255],"switch":[257],"between":[258],"two":[259],"distinct":[260],"types":[261],"positioning.":[264]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":20},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":12},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":19},{"year":2014,"cited_by_count":4}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
