{"id":"https://openalex.org/W24830797","doi":"https://doi.org/10.1371/journal.pcbi.1003598","title":"The Answer is Still 42 but What's the Question? The Paradox of Open Systems Benchmarks.","display_name":"The Answer is Still 42 but What's the Question? The Paradox of Open Systems Benchmarks.","publication_year":1994,"publication_date":"1994-01-01","ids":{"openalex":"https://openalex.org/W24830797","doi":"https://doi.org/10.1371/journal.pcbi.1003598","mag":"24830797"},"language":"en","primary_location":{"id":"mag:24830797","is_oa":false,"landing_page_url":"https://dblp.uni-trier.de/db/conf/cmg/cmg1994.html#Gunther94a","pdf_url":null,"source":{"id":"https://openalex.org/S4306513540","display_name":"Int. CMG Conference","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Int. CMG Conference","raw_type":null},"type":"article","indexed_in":[],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091014959","display_name":"Neil J. G\u00fcnther","orcid":"https://orcid.org/0000-0003-2621-3197"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Neil J. G\u00fcnther","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5091014959"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.0212766,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"10","issue":"5","first_page":"732","last_page":"738"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10456","display_name":"Multi-Agent Systems and Negotiation","score":0.0925000011920929,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10456","display_name":"Multi-Agent Systems and Negotiation","score":0.0925000011920929,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T14030","display_name":"Taxation and Legal Issues","score":0.08529999852180481,"subfield":{"id":"https://openalex.org/subfields/1402","display_name":"Accounting"},"field":{"id":"https://openalex.org/fields/14","display_name":"Business, Management and Accounting"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.4547594487667084},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4485189914703369},{"id":"https://openalex.org/keywords/closed-ended-question","display_name":"Closed-ended question","score":0.4464174211025238},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.2657098174095154}],"concepts":[{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.4547594487667084},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4485189914703369},{"id":"https://openalex.org/C193035329","wikidata":"https://www.wikidata.org/wiki/Q17007046","display_name":"Closed-ended question","level":2,"score":0.4464174211025238},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.2657098174095154}],"mesh":[],"locations_count":1,"locations":[{"id":"mag:24830797","is_oa":false,"landing_page_url":"https://dblp.uni-trier.de/db/conf/cmg/cmg1994.html#Gunther94a","pdf_url":null,"source":{"id":"https://openalex.org/S4306513540","display_name":"Int. CMG Conference","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Int. CMG Conference","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4801751224","display_name":null,"funder_award_id":"BB/I004769/2","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2411582200","https://openalex.org/W2314774286","https://openalex.org/W2022795540","https://openalex.org/W2390360995","https://openalex.org/W2042633357","https://openalex.org/W2495760984","https://openalex.org/W1579808474","https://openalex.org/W85889553","https://openalex.org/W2999494636","https://openalex.org/W3176966106","https://openalex.org/W2124727352","https://openalex.org/W2018465243","https://openalex.org/W2498105731","https://openalex.org/W2282066043","https://openalex.org/W1846343421","https://openalex.org/W2444085293","https://openalex.org/W2335145193","https://openalex.org/W292020866","https://openalex.org/W2482443480","https://openalex.org/W2002644469"],"abstract_inverted_index":{"Gene":[0],"transcription":[1,41,62,119,208,246],"mediated":[2],"by":[3,243],"RNA":[4],"polymerase":[5],"II":[6],"(pol-II)":[7],"is":[8,44],"a":[9,37],"key":[10],"step":[11],"in":[12,272],"gene":[13,30,74,134],"expression.":[14,31],"The":[15,55,95,125,207],"dynamics":[16,42],"of":[17,29,40,108,118,130,144,220,237],"pol-II":[18,47,69,131,193,239],"moving":[19],"along":[20],"the":[21,25,67,73,106,115,128,133,142,152,223,234,238],"transcribed":[22],"region":[23],"influence":[24],"rate":[26],"and":[27,64,104,136,169,176,250,269],"timing":[28],"In":[32],"this":[33],"work,":[34],"we":[35,158,210],"present":[36],"probabilistic":[38],"model":[39,56,126],"which":[43,163],"fitted":[45],"to":[46,60,65,140,161,167,185,191],"occupancy":[48,194],"time":[49,143,156],"course":[50],"data":[51,187],"measured":[52],"using":[53,80,89,189],"ChIP-Seq.":[54],"can":[57,137,228],"be":[58,138,179,229],"used":[59,139],"estimate":[61],"speed":[63],"infer":[66],"temporal":[68],"activity":[70,155,174,241],"profile":[71],"at":[72],"promoter.":[75],"Model":[76],"parameters":[77],"are":[78,159,202,261],"estimated":[79],"either":[81],"maximum":[82],"likelihood":[83],"estimation":[84],"or":[85],"via":[86],"Bayesian":[87,96],"inference":[88],"Markov":[90],"chain":[91],"Monte":[92],"Carlo":[93],"sampling.":[94],"approach":[97,227],"provides":[98],"confidence":[99],"intervals":[100],"for":[101,146,217,263],"parameter":[102],"estimates":[103],"allows":[105],"use":[107],"priors":[109],"that":[110,172,225,257],"capture":[111],"domain":[112],"knowledge,":[113],"e.g.":[114],"expected":[116],"range":[117],"speeds,":[120],"based":[121],"on":[122],"previous":[123],"experiments.":[124],"describes":[127],"movement":[129],"down":[132],"body":[135],"identify":[141],"induction":[145],"transcriptionally":[147],"engaged":[148],"genes.":[149],"By":[150],"clustering":[151],"inferred":[153],"promoter":[154,240,275],"profiles,":[157],"able":[160],"determine":[162],"genes":[164,171,221,260],"respond":[165],"quickly":[166],"stimuli":[168],"group":[170],"share":[173],"profiles":[175],"may":[177],"therefore":[178],"co-regulated.":[180],"We":[181,232,255],"apply":[182],"our":[183,226],"methodology":[184],"biological":[186,235],"obtained":[188,215],"ChIP-seq":[190],"measure":[192],"genome-wide":[195],"when":[196],"MCF-7":[197],"human":[198],"breast":[199],"cancer":[200],"cells":[201],"treated":[203],"with":[204,213,222],"estradiol":[205],"(E2).":[206],"speeds":[209],"obtain":[211],"agree":[212],"those":[214],"previously":[216],"smaller":[218],"numbers":[219],"advantage":[224],"applied":[230],"genome-wide.":[231],"validate":[233],"significance":[236],"clusters":[242],"investigating":[244],"cluster-specific":[245],"factor":[247],"binding":[248,271],"patterns":[249],"determining":[251],"canonical":[252],"pathway":[253],"enrichment.":[254],"find":[256],"rapidly":[258],"induced":[259],"enriched":[262],"both":[264],"estrogen":[265],"receptor":[266],"alpha":[267],"(ER\u03b1)":[268],"FOXA1":[270],"their":[273],"proximal":[274],"regions.":[276]},"counts_by_year":[],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2016-06-24T00:00:00"}
