{"id":"https://openalex.org/W2050672815","doi":"https://doi.org/10.1371/journal.pcbi.1003507","title":"Investigation of Inflammation and Tissue Patterning in the Gut Using a Spatially Explicit General-Purpose Model of Enteric Tissue (SEGMEnT)","display_name":"Investigation of Inflammation and Tissue Patterning in the Gut Using a Spatially Explicit General-Purpose Model of Enteric Tissue (SEGMEnT)","publication_year":2014,"publication_date":"2014-03-27","ids":{"openalex":"https://openalex.org/W2050672815","doi":"https://doi.org/10.1371/journal.pcbi.1003507","mag":"2050672815","pmid":"https://pubmed.ncbi.nlm.nih.gov/24675765"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1003507","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1003507","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003507&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003507&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112042579","display_name":"Chase Cockrell","orcid":null},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chase Cockrell","raw_affiliation_strings":["Department of Surgery, University of Chicago, Chicago, Illinois, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Surgery, University of Chicago, Chicago, Illinois, United States of America","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078078996","display_name":"Scott Christley","orcid":"https://orcid.org/0000-0002-9889-1221"},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Scott Christley","raw_affiliation_strings":["Department of Surgery, University of Chicago, Chicago, Illinois, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Surgery, University of Chicago, Chicago, Illinois, United States of America","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042696510","display_name":"Gary An","orcid":"https://orcid.org/0000-0003-4549-9004"},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Gary An","raw_affiliation_strings":["Department of Surgery, University of Chicago, Chicago, Illinois, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Surgery, University of Chicago, Chicago, Illinois, United States of America","institution_ids":["https://openalex.org/I40347166"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5042696510"],"corresponding_institution_ids":["https://openalex.org/I40347166"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":2.3503,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.8786866,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"10","issue":"3","first_page":"e1003507","last_page":"e1003507"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10276","display_name":"Helicobacter pylori-related gastroenterology studies","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10276","display_name":"Helicobacter pylori-related gastroenterology studies","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10365","display_name":"Gastrointestinal motility and disorders","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/2715","display_name":"Gastroenterology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13199","display_name":"Digestive system and related health","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inflammation","display_name":"Inflammation","score":0.6761124134063721},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6146802306175232},{"id":"https://openalex.org/keywords/pten","display_name":"PTEN","score":0.5377358198165894},{"id":"https://openalex.org/keywords/gastrointestinal-tract","display_name":"Gastrointestinal tract","score":0.4515397846698761},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.43973326683044434},{"id":"https://openalex.org/keywords/pathogenesis","display_name":"Pathogenesis","score":0.416384756565094},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.373851478099823},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.3503204584121704},{"id":"https://openalex.org/keywords/pi3k/akt/mtor-pathway","display_name":"PI3K/AKT/mTOR pathway","score":0.21480640769004822},{"id":"https://openalex.org/keywords/signal-transduction","display_name":"Signal transduction","score":0.2089739441871643},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2078014612197876}],"concepts":[{"id":"https://openalex.org/C2776914184","wikidata":"https://www.wikidata.org/wiki/Q101991","display_name":"Inflammation","level":2,"score":0.6761124134063721},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6146802306175232},{"id":"https://openalex.org/C2777609662","wikidata":"https://www.wikidata.org/wiki/Q416356","display_name":"PTEN","level":4,"score":0.5377358198165894},{"id":"https://openalex.org/C2780512811","wikidata":"https://www.wikidata.org/wiki/Q11829360","display_name":"Gastrointestinal tract","level":2,"score":0.4515397846698761},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.43973326683044434},{"id":"https://openalex.org/C2780942790","wikidata":"https://www.wikidata.org/wiki/Q372016","display_name":"Pathogenesis","level":2,"score":0.416384756565094},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.373851478099823},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.3503204584121704},{"id":"https://openalex.org/C86554907","wikidata":"https://www.wikidata.org/wiki/Q285613","display_name":"PI3K/AKT/mTOR pathway","level":3,"score":0.21480640769004822},{"id":"https://openalex.org/C62478195","wikidata":"https://www.wikidata.org/wiki/Q828130","display_name":"Signal transduction","level":2,"score":0.2089739441871643},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2078014612197876},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007249","descriptor_name":"Inflammation","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D007249","descriptor_name":"Inflammation","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D007249","descriptor_name":"Inflammation","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D007413","descriptor_name":"Intestinal Mucosa","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D007413","descriptor_name":"Intestinal Mucosa","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D007413","descriptor_name":"Intestinal Mucosa","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015427","descriptor_name":"Reperfusion Injury","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015427","descriptor_name":"Reperfusion Injury","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015427","descriptor_name":"Reperfusion Injury","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019485","descriptor_name":"Bone Morphogenetic Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019485","descriptor_name":"Bone Morphogenetic Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019485","descriptor_name":"Bone Morphogenetic Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019869","descriptor_name":"Phosphatidylinositol 3-Kinases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019869","descriptor_name":"Phosphatidylinositol 3-Kinases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019869","descriptor_name":"Phosphatidylinositol 3-Kinases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020895","descriptor_name":"Enterocytes","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D020895","descriptor_name":"Enterocytes","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D020895","descriptor_name":"Enterocytes","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D041981","descriptor_name":"Gastrointestinal Tract","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D041981","descriptor_name":"Gastrointestinal Tract","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D041981","descriptor_name":"Gastrointestinal Tract","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1371/journal.pcbi.1003507","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1003507","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003507&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:24675765","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24675765","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:uchicago.tind.io:10283","is_oa":true,"landing_page_url":"http://knowledge.uchicago.edu/record/10283","pdf_url":null,"source":{"id":"https://openalex.org/S4306402460","display_name":"Knowledge@UChicago (University of Chicago)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I40347166","host_organization_name":"University of Chicago","host_organization_lineage":["https://openalex.org/I40347166"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://knowledge.uchicago.edu/record/10283","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:213be59ca8b24d72857d97de2a2a1a30","is_oa":true,"landing_page_url":"https://doaj.org/article/213be59ca8b24d72857d97de2a2a1a30","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 10, Iss 3, p e1003507 (2014)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2954207","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3967920","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/976406","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/_Investigation_of_Inflammation_and_Tissue_Patterning_in_the_Gut_Using_a_Spatially_Explicit_General_Purpose_Model_of_Enteric_Tissue_SEGMEnT_/976406","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:pubmedcentral.nih.gov:3967920","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3967920","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1003507","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1003507","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003507&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.6499999761581421}],"awards":[{"id":"https://openalex.org/G197008112","display_name":null,"funder_award_id":"NIDDK","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3120046534","display_name":null,"funder_award_id":"GM53789","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3351119219","display_name":null,"funder_award_id":"P30DK42086","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"},{"id":"https://openalex.org/G3994085710","display_name":null,"funder_award_id":"P30DK42086","funder_id":"https://openalex.org/F4320309626","funder_display_name":"University of Chicago"},{"id":"https://openalex.org/G4359693134","display_name":null,"funder_award_id":"NIGMS","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5711034935","display_name":null,"funder_award_id":"P30DK42086","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6298986260","display_name":null,"funder_award_id":"NIGMS P50GM53789","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7037597414","display_name":null,"funder_award_id":"P50GM53789","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7205445978","display_name":null,"funder_award_id":"DK42086","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"},{"id":"https://openalex.org/G7294357767","display_name":null,"funder_award_id":"DK42086","funder_id":"https://openalex.org/F4320309626","funder_display_name":"University of Chicago"},{"id":"https://openalex.org/G7299739332","display_name":null,"funder_award_id":"DK42086","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7456738137","display_name":null,"funder_award_id":"NIDDK P30DK42086","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G919913038","display_name":null,"funder_award_id":"NIDDK P30DK42086","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"}],"funders":[{"id":"https://openalex.org/F4320309626","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337357","display_name":"National Institute of Diabetes and Digestive and Kidney Diseases","ror":"https://ror.org/00adh9b73"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2050672815.pdf","grobid_xml":"https://content.openalex.org/works/W2050672815.grobid-xml"},"referenced_works_count":78,"referenced_works":["https://openalex.org/W102380290","https://openalex.org/W160793614","https://openalex.org/W1536706018","https://openalex.org/W1554643485","https://openalex.org/W1778696825","https://openalex.org/W1922856014","https://openalex.org/W1956427901","https://openalex.org/W1969581126","https://openalex.org/W1970160019","https://openalex.org/W1972760177","https://openalex.org/W1975631908","https://openalex.org/W1980034145","https://openalex.org/W1981778940","https://openalex.org/W1990351024","https://openalex.org/W1993677820","https://openalex.org/W1993748871","https://openalex.org/W1995060691","https://openalex.org/W1998302810","https://openalex.org/W1998867113","https://openalex.org/W2003636559","https://openalex.org/W2005132036","https://openalex.org/W2006012747","https://openalex.org/W2012884263","https://openalex.org/W2014744152","https://openalex.org/W2020035307","https://openalex.org/W2020111163","https://openalex.org/W2021370278","https://openalex.org/W2023880875","https://openalex.org/W2025176241","https://openalex.org/W2026035216","https://openalex.org/W2029002504","https://openalex.org/W2029388016","https://openalex.org/W2030484446","https://openalex.org/W2034592603","https://openalex.org/W2040405602","https://openalex.org/W2044087558","https://openalex.org/W2047143101","https://openalex.org/W2047573521","https://openalex.org/W2048358780","https://openalex.org/W2053956905","https://openalex.org/W2062869000","https://openalex.org/W2068970169","https://openalex.org/W2070445709","https://openalex.org/W2079028819","https://openalex.org/W2079819294","https://openalex.org/W2081416972","https://openalex.org/W2084069977","https://openalex.org/W2085006338","https://openalex.org/W2091192629","https://openalex.org/W2092578710","https://openalex.org/W2098278242","https://openalex.org/W2108534660","https://openalex.org/W2121595505","https://openalex.org/W2125311914","https://openalex.org/W2128135511","https://openalex.org/W2130929414","https://openalex.org/W2133217144","https://openalex.org/W2133471808","https://openalex.org/W2137413972","https://openalex.org/W2140440869","https://openalex.org/W2143221258","https://openalex.org/W2143263795","https://openalex.org/W2146235437","https://openalex.org/W2146435848","https://openalex.org/W2148170212","https://openalex.org/W2150704630","https://openalex.org/W2152558226","https://openalex.org/W2157999920","https://openalex.org/W2159532448","https://openalex.org/W2163740253","https://openalex.org/W2164712741","https://openalex.org/W2165087323","https://openalex.org/W2171913567","https://openalex.org/W2332533524","https://openalex.org/W2517988957","https://openalex.org/W4246437600","https://openalex.org/W6632109134","https://openalex.org/W6675976877"],"related_works":["https://openalex.org/W4255321854","https://openalex.org/W2074517075","https://openalex.org/W3146426108","https://openalex.org/W2884617011","https://openalex.org/W3044672584","https://openalex.org/W2087724775","https://openalex.org/W2167243939","https://openalex.org/W2077739050","https://openalex.org/W2587680012","https://openalex.org/W3024085365"],"abstract_inverted_index":{"The":[0],"mucosa":[1],"of":[2,46,49,76,88,91,96,118,135,144,147,162,188,198,219,228,259],"the":[3,41,58,67,74,77,89,103,111,130,145,156,225,257],"intestinal":[4],"tract":[5],"represents":[6],"a":[7,29,37,47,54,94,116,160,166,171,186,196,205,216,240],"finely":[8],"tuned":[9],"system":[10],"where":[11],"tissue":[12,99,150],"structure":[13],"strongly":[14],"influences,":[15],"and":[16,28,34,44,64,106,169,210,223,234],"is":[17,53,65],"turn":[18],"influenced":[19,152],"by,":[20],"its":[21],"function":[22],"as":[23,93,151,183,185,204,215,239,252],"both":[24],"an":[25,253],"absorptive":[26],"surface":[27],"defensive":[30],"barrier.":[31],"Mucosal":[32],"architecture":[33,79,114],"histology":[35],"plays":[36],"key":[38,217],"role":[39,90,207,227],"in":[40,57,60,231,261],"diagnosis,":[42],"characterization":[43,87],"pathophysiology":[45],"host":[48],"gastrointestinal":[50,62,262],"diseases.":[51],"Inflammation":[52],"significant":[55,70],"factor":[56,72],"pathogenesis":[59],"many":[61],"diseases,":[63],"perhaps":[66],"most":[68],"clinically":[69,199],"control":[71],"governing":[73],"maintenance":[75],"mucosal":[78,98,181],"by":[80,153],"morphogenic":[81],"pathways.":[82],"We":[83],"propose":[84],"that":[85,109,248],"appropriate":[86],"inflammation":[92,154,222,238,260],"controller":[95],"enteric":[97,148,232],"patterning":[100],"requires":[101],"understanding":[102],"underlying":[104],"cellular":[105],"molecular":[107],"dynamics":[108,182],"determine":[110],"epithelial":[112,149],"crypt-villus":[113],"across":[115],"range":[117,197],"conditions":[119],"from":[120,170],"health":[121],"to":[122,139,158,177],"disease.":[123,263],"Towards":[124],"this":[125],"end":[126],"we":[127],"have":[128],"developed":[129],"Spatially":[131],"Explicit":[132],"General-purpose":[133],"Model":[134],"Enteric":[136],"Tissue":[137],"(SEGMEnT)":[138],"dynamically":[140],"represent":[141],"existing":[142],"knowledge":[143,173],"behavior":[146],"with":[155],"ability":[157],"generate":[159],"variety":[161],"pathophysiological":[163],"processes":[164],"within":[165],"common":[167,172],"platform":[168,255],"base.":[174],"In":[175],"addition":[176],"reproducing":[178],"healthy":[179],"ileal":[180],"well":[184],"series":[187],"morphogen":[189],"knock-out/inhibition":[190],"experiments,":[191],"SEGMEnT":[192,249],"provides":[193],"insight":[194],"into":[195],"relevant":[200],"cellular-molecular":[201],"mechanisms,":[202],"such":[203],"putative":[206],"for":[208,242,256],"Phosphotase":[209],"tensin":[211],"homolog/phosphoinositide":[212],"3-kinase":[213],"(PTEN/PI3K)":[214],"point":[218],"crosstalk":[220],"between":[221],"morphogenesis,":[224],"protective":[226],"enterocyte":[229],"sloughing":[230],"ischemia-reperfusion":[233],"chronic":[235],"low":[236],"level":[237],"driver":[241],"colonic":[243],"metaplasia.":[244],"These":[245],"results":[246],"suggest":[247],"can":[250],"serve":[251],"integrating":[254],"study":[258]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
