{"id":"https://openalex.org/W2064432113","doi":"https://doi.org/10.1371/journal.pcbi.1003354","title":"Understanding the Connection between Epigenetic DNA Methylation and Nucleosome Positioning from Computer Simulations","display_name":"Understanding the Connection between Epigenetic DNA Methylation and Nucleosome Positioning from Computer Simulations","publication_year":2013,"publication_date":"2013-11-21","ids":{"openalex":"https://openalex.org/W2064432113","doi":"https://doi.org/10.1371/journal.pcbi.1003354","mag":"2064432113","pmid":"https://pubmed.ncbi.nlm.nih.gov/24278005"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1003354","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1003354","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003354&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003354&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054488801","display_name":"Guillem Portella","orcid":"https://orcid.org/0000-0002-9380-6753"},"institutions":[{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]},{"id":"https://openalex.org/I4210122345","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210122345","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Guillem Portella","raw_affiliation_strings":["Institute for Research in Biomedicine (IRB Barcelona), Barcelona, Spain ; Joint IRB-BSC Program in Computational Biology, Barcelona, Spain","Joint IRB-BSC Program in Computational Biology, Barcelona, Spain","Institute for Research in Biomedicine (IRB Barcelona), Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Institute for Research in Biomedicine (IRB Barcelona), Barcelona, Spain ; Joint IRB-BSC Program in Computational Biology, Barcelona, Spain","institution_ids":[]},{"raw_affiliation_string":"Joint IRB-BSC Program in Computational Biology, Barcelona, Spain","institution_ids":["https://openalex.org/I9617848"]},{"raw_affiliation_string":"Institute for Research in Biomedicine (IRB Barcelona), Barcelona, Spain","institution_ids":["https://openalex.org/I4210122345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090472903","display_name":"Federica Battistini","orcid":"https://orcid.org/0000-0002-7544-0938"},"institutions":[{"id":"https://openalex.org/I4210122345","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210122345","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Federica Battistini","raw_affiliation_strings":["Institute for Research in Biomedicine (IRB Barcelona), Barcelona, Spain","Joint IRB-BSC Program in Computational Biology, Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Institute for Research in Biomedicine (IRB Barcelona), Barcelona, Spain","institution_ids":["https://openalex.org/I4210122345"]},{"raw_affiliation_string":"Joint IRB-BSC Program in Computational Biology, Barcelona, Spain","institution_ids":["https://openalex.org/I9617848"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006399866","display_name":"Modesto Orozco","orcid":"https://orcid.org/0000-0002-8608-3278"},"institutions":[{"id":"https://openalex.org/I4210122345","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210122345","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Modesto Orozco","raw_affiliation_strings":["Departament de Bioqu\u00edmica i Biologia Molecular, Universitat de Barcelona, Barcelona, Spain","Institute for Research in Biomedicine (IRB Barcelona), Barcelona, Spain","Joint IRB-BSC Program in Computational Biology, Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Departament de Bioqu\u00edmica i Biologia Molecular, Universitat de Barcelona, Barcelona, Spain","institution_ids":["https://openalex.org/I71999127"]},{"raw_affiliation_string":"Institute for Research in Biomedicine (IRB Barcelona), Barcelona, Spain","institution_ids":["https://openalex.org/I4210122345"]},{"raw_affiliation_string":"Joint IRB-BSC Program in Computational Biology, Barcelona, Spain","institution_ids":["https://openalex.org/I9617848"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5006399866"],"corresponding_institution_ids":["https://openalex.org/I4210122345","https://openalex.org/I71999127","https://openalex.org/I9617848"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":3.444,"has_fulltext":true,"cited_by_count":58,"citation_normalized_percentile":{"value":0.93076547,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"9","issue":"11","first_page":"e1003354","last_page":"e1003354"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.958899974822998,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13157","display_name":"Cancer-related gene regulation","score":0.9383000135421753,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epigenetics","display_name":"Epigenetics","score":0.8033573627471924},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.7877627611160278},{"id":"https://openalex.org/keywords/nucleosome","display_name":"Nucleosome","score":0.6879803538322449},{"id":"https://openalex.org/keywords/epigenomics","display_name":"Epigenomics","score":0.5735102295875549},{"id":"https://openalex.org/keywords/epigenetics-of-physical-exercise","display_name":"Epigenetics of physical exercise","score":0.5452613830566406},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5243911147117615},{"id":"https://openalex.org/keywords/histone","display_name":"Histone","score":0.509381890296936},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4550004303455353},{"id":"https://openalex.org/keywords/cpg-site","display_name":"CpG site","score":0.4413776397705078},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.4387779235839844},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.3793375492095947},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3482874631881714},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.2244235873222351},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.21375009417533875}],"concepts":[{"id":"https://openalex.org/C41091548","wikidata":"https://www.wikidata.org/wiki/Q26939","display_name":"Epigenetics","level":3,"score":0.8033573627471924},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.7877627611160278},{"id":"https://openalex.org/C84772758","wikidata":"https://www.wikidata.org/wiki/Q271794","display_name":"Nucleosome","level":4,"score":0.6879803538322449},{"id":"https://openalex.org/C121912465","wikidata":"https://www.wikidata.org/wiki/Q3589153","display_name":"Epigenomics","level":5,"score":0.5735102295875549},{"id":"https://openalex.org/C37080517","wikidata":"https://www.wikidata.org/wiki/Q18353747","display_name":"Epigenetics of physical exercise","level":5,"score":0.5452613830566406},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5243911147117615},{"id":"https://openalex.org/C64927066","wikidata":"https://www.wikidata.org/wiki/Q36293","display_name":"Histone","level":3,"score":0.509381890296936},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4550004303455353},{"id":"https://openalex.org/C140173407","wikidata":"https://www.wikidata.org/wiki/Q1138358","display_name":"CpG site","level":5,"score":0.4413776397705078},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.4387779235839844},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.3793375492095947},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3482874631881714},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.2244235873222351},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21375009417533875}],"mesh":[{"descriptor_ui":"D003596","descriptor_name":"Cytosine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003596","descriptor_name":"Cytosine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003596","descriptor_name":"Cytosine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003596","descriptor_name":"Cytosine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D003596","descriptor_name":"Cytosine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D003596","descriptor_name":"Cytosine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009707","descriptor_name":"Nucleosomes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009707","descriptor_name":"Nucleosomes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009707","descriptor_name":"Nucleosomes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1371/journal.pcbi.1003354","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1003354","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003354&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:24278005","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24278005","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:diposit.ub.edu:2445/148000","is_oa":true,"landing_page_url":"https://hdl.handle.net/2445/148000","pdf_url":null,"source":{"id":"https://openalex.org/S4306401653","display_name":"Dip\u00f2sit Digital de la Universitat de Barcelona (Universitat de Barcelona)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71999127","host_organization_name":"Universitat de Barcelona","host_organization_lineage":["https://openalex.org/I71999127"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Articles publicats en revistes (Bioqu\u00edmica i Biomedicina Molecular)","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:recercat.cat:2072/368026","is_oa":true,"landing_page_url":"http://hdl.handle.net/2445/148000","pdf_url":"http://hdl.handle.net/2445/148000","source":{"id":"https://openalex.org/S4306402147","display_name":"RECERCAT (Consorci de Serveis Universitaris de Catalunya)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210090028","host_organization_name":"Consorci de Serveis Universitaris de Catalunya","host_organization_lineage":["https://openalex.org/I4210090028"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:029f6b54fbd841eaafacdc02fb87eabd","is_oa":true,"landing_page_url":"https://doaj.org/article/029f6b54fbd841eaafacdc02fb87eabd","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 9, Iss 11, p e1003354 (2013)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2824560","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3836855","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/859323","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/_Understanding_the_Connection_between_Epigenetic_DNA_Methylation_and_Nucleosome_Positioning_from_Computer_Simulations_/859323","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1003354","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1003354","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003354&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322121","display_name":"Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats","ror":"https://ror.org/0371hy230"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2064432113.pdf","grobid_xml":"https://content.openalex.org/works/W2064432113.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W1504303645","https://openalex.org/W1967064280","https://openalex.org/W1967841068","https://openalex.org/W1970973025","https://openalex.org/W1978985606","https://openalex.org/W1982255060","https://openalex.org/W1984807040","https://openalex.org/W1987272843","https://openalex.org/W1998517881","https://openalex.org/W2005643112","https://openalex.org/W2010528886","https://openalex.org/W2017668896","https://openalex.org/W2019769511","https://openalex.org/W2021459974","https://openalex.org/W2032183039","https://openalex.org/W2046387526","https://openalex.org/W2053989170","https://openalex.org/W2059099579","https://openalex.org/W2061111901","https://openalex.org/W2065529053","https://openalex.org/W2066154261","https://openalex.org/W2072301590","https://openalex.org/W2074746593","https://openalex.org/W2077562677","https://openalex.org/W2081195534","https://openalex.org/W2082594247","https://openalex.org/W2085353149","https://openalex.org/W2095351770","https://openalex.org/W2095994064","https://openalex.org/W2096330673","https://openalex.org/W2101259235","https://openalex.org/W2102066411","https://openalex.org/W2110992704","https://openalex.org/W2111465765","https://openalex.org/W2115701239","https://openalex.org/W2123032740","https://openalex.org/W2129745108","https://openalex.org/W2141410747","https://openalex.org/W2151553287","https://openalex.org/W2154456026","https://openalex.org/W2154731166","https://openalex.org/W2158774461","https://openalex.org/W2160077345","https://openalex.org/W2161224111","https://openalex.org/W2169628276","https://openalex.org/W2170634666"],"related_works":["https://openalex.org/W4318473910","https://openalex.org/W2113253885","https://openalex.org/W2020842184","https://openalex.org/W1979616193","https://openalex.org/W2082280880","https://openalex.org/W2040474954","https://openalex.org/W2168125442","https://openalex.org/W2362561464","https://openalex.org/W191933017","https://openalex.org/W3177464797"],"abstract_inverted_index":{"Cytosine":[0],"methylation":[1,26,41],"is":[2,70],"one":[3],"of":[4,14,23,42,66,86,93,113],"the":[5,12,21,55,60,75,82,87,91,111],"most":[6],"important":[7],"epigenetic":[8,24,114],"marks":[9],"that":[10,40],"regulate":[11],"process":[13],"gene":[15,100],"expression.":[16],"Here,":[17],"we":[18],"have":[19],"examined":[20],"effect":[22],"DNA":[25,56,94],"on":[27,110],"nucleosomal":[28,88],"stability":[29],"using":[30],"molecular":[31],"dynamics":[32],"simulations":[33],"and":[34,84,98],"elastic":[35],"deformation":[36],"models.":[37],"We":[38],"found":[39],"CpG":[43,68],"steps":[44,69],"destabilizes":[45],"nucleosomes,":[46],"especially":[47],"when":[48],"these":[49],"are":[50],"placed":[51],"in":[52,77],"sites":[53],"where":[54],"minor":[57],"groove":[58],"faces":[59],"histone":[61],"core.":[62],"The":[63],"larger":[64],"stiffness":[65],"methylated":[67],"a":[71,106],"crucial":[72],"factor":[73],"behind":[74],"decrease":[76],"nucleosome":[78],"stability.":[79],"Methylation":[80],"changes":[81],"positioning":[83],"phasing":[85],"DNA,":[89],"altering":[90],"accessibility":[92],"to":[95],"regulatory":[96],"proteins,":[97],"accordingly":[99],"functionality.":[101],"Our":[102],"theoretical":[103],"calculations":[104],"highlight":[105],"simple":[107],"physical-based":[108],"explanation":[109],"foundations":[112],"signaling.":[115]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":9}],"updated_date":"2026-04-11T08:14:18.477133","created_date":"2025-10-10T00:00:00"}
