{"id":"https://openalex.org/W2001097518","doi":"https://doi.org/10.1371/journal.pcbi.1003297","title":"Comparing Algorithms That Reconstruct Cell Lineage Trees Utilizing Information on Microsatellite Mutations","display_name":"Comparing Algorithms That Reconstruct Cell Lineage Trees Utilizing Information on Microsatellite Mutations","publication_year":2013,"publication_date":"2013-11-14","ids":{"openalex":"https://openalex.org/W2001097518","doi":"https://doi.org/10.1371/journal.pcbi.1003297","mag":"2001097518","pmid":"https://pubmed.ncbi.nlm.nih.gov/24244121"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1003297","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1003297","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003297&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003297&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014986551","display_name":"Noa Chapal-Ilani","orcid":null},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Noa Chapal-Ilani","raw_affiliation_strings":["Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel","institution_ids":["https://openalex.org/I53964585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086771704","display_name":"Yosef E. Maruvka","orcid":"https://orcid.org/0000-0002-8918-9887"},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Yosef E. Maruvka","raw_affiliation_strings":["Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel","institution_ids":["https://openalex.org/I53964585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023804446","display_name":"Adam Spiro","orcid":"https://orcid.org/0000-0002-3955-2481"},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Adam Spiro","raw_affiliation_strings":["Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel","institution_ids":["https://openalex.org/I53964585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007297931","display_name":"Yitzhak Reizel","orcid":"https://orcid.org/0000-0002-7736-0018"},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Yitzhak Reizel","raw_affiliation_strings":["Department of Biological Regulation, Weizmann Institute of Science, Rehovot, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Regulation, Weizmann Institute of Science, Rehovot, Israel","institution_ids":["https://openalex.org/I53964585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111850886","display_name":"Rivka Adar","orcid":null},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Rivka Adar","raw_affiliation_strings":["Department of Biological Chemistry, Weizmann Institute of Science, Rehovot, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Chemistry, Weizmann Institute of Science, Rehovot, Israel","institution_ids":["https://openalex.org/I53964585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034717529","display_name":"Liran I. Shlush","orcid":"https://orcid.org/0000-0002-3700-270X"},"institutions":[{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Liran I. Shlush","raw_affiliation_strings":["Bruce Rappaport Faculty of Medicine and Research Institute, Technion \u2013 Israel Institute of Technology, Haifa, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bruce Rappaport Faculty of Medicine and Research Institute, Technion \u2013 Israel Institute of Technology, Haifa, Israel","institution_ids":["https://openalex.org/I174306211"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053718371","display_name":"Ehud Shapiro","orcid":"https://orcid.org/0009-0002-8266-3125"},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Ehud Shapiro","raw_affiliation_strings":["Department of Biological Chemistry, Weizmann Institute of Science, Rehovot, Israel","Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Chemistry, Weizmann Institute of Science, Rehovot, Israel","institution_ids":["https://openalex.org/I53964585"]},{"raw_affiliation_string":"Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel","institution_ids":["https://openalex.org/I53964585"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5053718371"],"corresponding_institution_ids":["https://openalex.org/I53964585"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.8084,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.73910565,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"9","issue":"11","first_page":"e1003297","last_page":"e1003297"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11369","display_name":"Genetic factors in colorectal cancer","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/2734","display_name":"Pathology and Forensic Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7988641262054443},{"id":"https://openalex.org/keywords/lineage","display_name":"Lineage (genetic)","score":0.7048859596252441},{"id":"https://openalex.org/keywords/organism","display_name":"Organism","score":0.6560325622558594},{"id":"https://openalex.org/keywords/somatic-cell","display_name":"Somatic cell","score":0.5855918526649475},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5289604663848877},{"id":"https://openalex.org/keywords/model-organism","display_name":"Model organism","score":0.511784017086029},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.47508350014686584},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4727374315261841},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.3784008026123047},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3419021964073181},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.29917436838150024}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7988641262054443},{"id":"https://openalex.org/C2776817793","wikidata":"https://www.wikidata.org/wiki/Q6553369","display_name":"Lineage (genetic)","level":3,"score":0.7048859596252441},{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.6560325622558594},{"id":"https://openalex.org/C134305767","wikidata":"https://www.wikidata.org/wiki/Q725508","display_name":"Somatic cell","level":3,"score":0.5855918526649475},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5289604663848877},{"id":"https://openalex.org/C19843653","wikidata":"https://www.wikidata.org/wiki/Q213907","display_name":"Model organism","level":3,"score":0.511784017086029},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.47508350014686584},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4727374315261841},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3784008026123047},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3419021964073181},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.29917436838150024},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001854","descriptor_name":"Bone Marrow Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001854","descriptor_name":"Bone Marrow Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001854","descriptor_name":"Bone Marrow Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002478","descriptor_name":"Cells, Cultured","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002478","descriptor_name":"Cells, Cultured","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002478","descriptor_name":"Cells, Cultured","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008822","descriptor_name":"Mice, Transgenic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008822","descriptor_name":"Mice, Transgenic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008822","descriptor_name":"Mice, Transgenic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019070","descriptor_name":"Cell Lineage","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019070","descriptor_name":"Cell Lineage","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019070","descriptor_name":"Cell Lineage","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1371/journal.pcbi.1003297","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1003297","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003297&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:24244121","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24244121","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.918.679","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.918.679","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://europepmc.org/backend/ptpmcrender.fcgi?accid%3DPMC3828138%26blobtype%3Dpdf","raw_type":"text"},{"id":"pmh:oai:RePEc:plo:pcbi00:1003297","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003297","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:b48f99d5c3af4fda8794c1f299b5ce68","is_oa":true,"landing_page_url":"https://doaj.org/article/b48f99d5c3af4fda8794c1f299b5ce68","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 9, Iss 11, p e1003297 (2013)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2815887","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3828138","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/850916","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/_Comparing_Algorithms_That_Reconstruct_Cell_Lineage_Trees_Utilizing_Information_on_Microsatellite_Mutations_/850916","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1003297","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1003297","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003297&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7835391685","display_name":null,"funder_award_id":"FP7-ERC-AdG","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2001097518.pdf","grobid_xml":"https://content.openalex.org/works/W2001097518.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W1476588","https://openalex.org/W1526796048","https://openalex.org/W1606411947","https://openalex.org/W1771404712","https://openalex.org/W1867732144","https://openalex.org/W1882473202","https://openalex.org/W1980867345","https://openalex.org/W1984895636","https://openalex.org/W1989952069","https://openalex.org/W1990594571","https://openalex.org/W1991637670","https://openalex.org/W1994323133","https://openalex.org/W1997437810","https://openalex.org/W1997803921","https://openalex.org/W1998249907","https://openalex.org/W2004041865","https://openalex.org/W2016823345","https://openalex.org/W2031869418","https://openalex.org/W2032518018","https://openalex.org/W2034629821","https://openalex.org/W2038370559","https://openalex.org/W2043955428","https://openalex.org/W2054625838","https://openalex.org/W2065999427","https://openalex.org/W2066397696","https://openalex.org/W2080322528","https://openalex.org/W2080873513","https://openalex.org/W2086267876","https://openalex.org/W2093144236","https://openalex.org/W2097706568","https://openalex.org/W2099272153","https://openalex.org/W2117687396","https://openalex.org/W2133320142","https://openalex.org/W2135610271","https://openalex.org/W2137603189","https://openalex.org/W2139353300","https://openalex.org/W2146058063","https://openalex.org/W2146442942","https://openalex.org/W2148698435","https://openalex.org/W2149943693","https://openalex.org/W2154963941","https://openalex.org/W2160517750","https://openalex.org/W2169266480","https://openalex.org/W2170574599","https://openalex.org/W2171787842","https://openalex.org/W2229908198","https://openalex.org/W4233815609","https://openalex.org/W7066511990"],"related_works":["https://openalex.org/W4223896405","https://openalex.org/W2059629050","https://openalex.org/W2258998699","https://openalex.org/W3013644380","https://openalex.org/W2074740504","https://openalex.org/W1996935079","https://openalex.org/W3210243923","https://openalex.org/W2145833061","https://openalex.org/W1998405066","https://openalex.org/W2171737904"],"abstract_inverted_index":{"Organism":[0],"cells":[1,119,195,226],"proliferate":[2],"and":[3,9,40,42,56,61,120,129,146,198,204,232,237,250],"die":[4],"to":[5,19,94,202,247,308],"build,":[6],"maintain,":[7],"renew":[8],"repair":[10],"it.":[11,271],"The":[12,50,239],"cellular":[13],"history":[14],"of":[15,117,124,138,148,152,193,208,221,235,312],"an":[16,96],"organism":[17,37,72,112],"up":[18],"any":[20],"point":[21],"in":[22,32,111,169,191,196,200,214,224,301],"time":[23],"can":[24,91,269],"be":[25,92],"captured":[26],"by":[27,165,243,315],"a":[28,75,82,121,158],"cell":[29,68,73,98,139,162],"lineage":[30,99,140,163,210],"tree":[31,211],"which":[33,227],"vertices":[34],"represent":[35,45,59],"all":[36,266],"cells,":[38],"past":[39],"present,":[41],"directed":[43],"edges":[44],"progeny":[46],"relations":[47],"among":[48,281],"them.":[49],"root":[51],"represents":[52],"the":[53,57,115,127,136,149,206,245,260,278,288],"fertilized":[54],"egg,":[55],"leaves":[58],"extant":[60],"dead":[62],"cells.":[63],"Somatic":[64],"mutations":[65,168,190,223],"accumulated":[66],"during":[67],"division":[69],"endow":[70],"each":[71],"with":[74,81],"genomic":[76,89],"signature":[77],"that":[78,106,258,277],"is":[79,263,276,284,292],"unique":[80,104],"very":[83],"high":[84],"probability.":[85],"Distances":[86],"between":[87],"such":[88],"signatures":[90],"used":[93,291],"reconstruct":[95],"organism's":[97],"tree.":[100],"Cell":[101],"populations":[102,113],"possess":[103],"features":[105],"are":[107],"absent":[108],"or":[109],"rare":[110],"(e.g.,":[114],"presence":[116],"stem":[118],"small":[122],"number":[123],"generations":[125],"since":[126],"zygote)":[128],"do":[130],"not":[131],"undergo":[132],"sexual":[133],"reproduction,":[134],"hence":[135],"reconstruction":[137,212],"trees":[141,164],"calls":[142],"for":[143,160],"careful":[144],"examination":[145],"adaptation":[147],"standard":[150],"tools":[151],"population":[153],"genetics.":[154],"Our":[155],"lab":[156],"developed":[157],"method":[159],"reconstructing":[161],"examining":[166],"only":[167],"highly":[170],"variable":[171],"microsatellite":[172],"loci":[173],"(MS,":[174],"also":[175],"called":[176],"short":[177],"tandem":[178],"repeats,":[179],"STR).":[180],"In":[181,254],"this":[182,215,313],"study":[183],"we":[184,256],"use":[185],"experimental":[186],"data":[187,314],"on":[188],"somatic":[189,222],"MS":[192],"individual":[194,225],"human":[197],"mice":[199,236],"order":[201],"validate":[203],"quantify":[205],"utility":[207],"known":[209,249],"algorithms":[213,267],"context.":[216],"We":[217,296],"employed":[218],"extensive":[219],"measurements":[220],"were":[228],"isolated":[229],"from":[230],"healthy":[231],"diseased":[233],"tissues":[234],"humans.":[238],"validation":[240],"was":[241],"done":[242],"analyzing":[244],"ability":[246],"infer":[248,270],"clear":[251],"biological":[252,261],"scenarios.":[253],"general,":[255],"found":[257],"if":[259],"scenario":[262],"simple,":[264],"almost":[265],"tested":[268,283],"Another":[272],"somewhat":[273],"surprising":[274],"conclusion":[275],"best":[279],"algorithm":[280],"those":[282],"Neighbor":[285],"Joining":[286],"where":[287],"distance":[289],"measure":[290],"normalized":[293],"absolute":[294],"distance.":[295],"include":[297],"our":[298],"full":[299],"dataset":[300],"Tables":[302],"S1,":[303],"S2,":[304],"S3,":[305],"S4,":[306],"S5":[307],"enable":[309],"further":[310],"analysis":[311],"others.":[316]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}