{"id":"https://openalex.org/W2152205024","doi":"https://doi.org/10.1371/journal.pcbi.1003235","title":"Limited Agreement of Independent RNAi Screens for Virus-Required Host Genes Owes More to False-Negative than False-Positive Factors","display_name":"Limited Agreement of Independent RNAi Screens for Virus-Required Host Genes Owes More to False-Negative than False-Positive Factors","publication_year":2013,"publication_date":"2013-09-19","ids":{"openalex":"https://openalex.org/W2152205024","doi":"https://doi.org/10.1371/journal.pcbi.1003235","mag":"2152205024","pmid":"https://pubmed.ncbi.nlm.nih.gov/24068911"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1003235","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1003235","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003235&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003235&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001069528","display_name":"Linhui Hao","orcid":"https://orcid.org/0000-0002-7325-1009"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]},{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Linhui Hao","raw_affiliation_strings":["Institute of Molecular Virology, University of Wisconsin-Madison, Madison, Wisconsin, United States of America ; Howard Hughes Medical Institute, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","Howard Hughes Medical Institute, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","Institute of Molecular Virology, University of Wisconsin-Madison, Madison, Wisconsin, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Molecular Virology, University of Wisconsin-Madison, Madison, Wisconsin, United States of America ; Howard Hughes Medical Institute, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","institution_ids":[]},{"raw_affiliation_string":"Howard Hughes Medical Institute, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","institution_ids":["https://openalex.org/I1344073410","https://openalex.org/I135310074"]},{"raw_affiliation_string":"Institute of Molecular Virology, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055331326","display_name":"Qiuling He","orcid":"https://orcid.org/0000-0002-9000-6726"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qiuling He","raw_affiliation_strings":["Department of Statistics, University of Wisconsin-Madison, Madison, Wisconsin, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Statistics, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048840755","display_name":"Zhishi Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhishi Wang","raw_affiliation_strings":["Department of Statistics, University of Wisconsin-Madison, Madison, Wisconsin, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Statistics, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071722704","display_name":"Mark Craven","orcid":"https://orcid.org/0000-0002-8917-7464"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark Craven","raw_affiliation_strings":["Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","Department of Computer Sciences, University of Wisconsin-Madison, Madison, Wisconsin, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"Department of Computer Sciences, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072759658","display_name":"Michael A. Newton","orcid":"https://orcid.org/0000-0001-9038-878X"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Michael A. Newton","raw_affiliation_strings":["Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","Department of Statistics, University of Wisconsin-Madison, Madison, Wisconsin, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"Department of Statistics, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026899432","display_name":"Paul Ahlquist","orcid":"https://orcid.org/0000-0003-4584-9318"},"institutions":[{"id":"https://openalex.org/I29680605","display_name":"Morgridge Institute for Research","ror":"https://ror.org/05cb4rb43","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I135310074","https://openalex.org/I29680605"]},{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Paul Ahlquist","raw_affiliation_strings":["Howard Hughes Medical Institute, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","Institute of Molecular Virology, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","Morgridge Institute for Research, Madison, Wisconsin, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Howard Hughes Medical Institute, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","institution_ids":["https://openalex.org/I1344073410","https://openalex.org/I135310074"]},{"raw_affiliation_string":"Institute of Molecular Virology, University of Wisconsin-Madison, Madison, Wisconsin, United States of America","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"Morgridge Institute for Research, Madison, Wisconsin, United States of America","institution_ids":["https://openalex.org/I29680605"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5026899432","https://openalex.org/A5072759658"],"corresponding_institution_ids":["https://openalex.org/I1344073410","https://openalex.org/I135310074","https://openalex.org/I29680605"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":3.7395,"has_fulltext":true,"cited_by_count":54,"citation_normalized_percentile":{"value":0.94027781,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"9","issue":"9","first_page":"e1003235","last_page":"e1003235"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11668","display_name":"interferon and immune responses","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.7109913229942322},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7081735134124756},{"id":"https://openalex.org/keywords/rna-interference","display_name":"RNA interference","score":0.6897192001342773},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.6086685657501221},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5896826982498169},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5844553112983704},{"id":"https://openalex.org/keywords/influenza-a-virus","display_name":"Influenza A virus","score":0.4939754605293274},{"id":"https://openalex.org/keywords/false-discovery-rate","display_name":"False discovery rate","score":0.4677821397781372},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.34456297755241394},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.23875120282173157}],"concepts":[{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.7109913229942322},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7081735134124756},{"id":"https://openalex.org/C166703698","wikidata":"https://www.wikidata.org/wiki/Q201993","display_name":"RNA interference","level":4,"score":0.6897192001342773},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.6086685657501221},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5896826982498169},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5844553112983704},{"id":"https://openalex.org/C2777546802","wikidata":"https://www.wikidata.org/wiki/Q834390","display_name":"Influenza A virus","level":3,"score":0.4939754605293274},{"id":"https://openalex.org/C193244246","wikidata":"https://www.wikidata.org/wiki/Q5432696","display_name":"False discovery rate","level":3,"score":0.4677821397781372},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.34456297755241394},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.23875120282173157}],"mesh":[{"descriptor_ui":"D005188","descriptor_name":"False Negative Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005188","descriptor_name":"False Negative Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005188","descriptor_name":"False Negative Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005189","descriptor_name":"False Positive Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005189","descriptor_name":"False Positive Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005189","descriptor_name":"False Positive Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005814","descriptor_name":"Genes, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005814","descriptor_name":"Genes, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005814","descriptor_name":"Genes, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009975","descriptor_name":"Orthomyxoviridae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009975","descriptor_name":"Orthomyxoviridae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009975","descriptor_name":"Orthomyxoviridae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009975","descriptor_name":"Orthomyxoviridae","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009975","descriptor_name":"Orthomyxoviridae","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009975","descriptor_name":"Orthomyxoviridae","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D014779","descriptor_name":"Virus Replication","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014779","descriptor_name":"Virus Replication","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014779","descriptor_name":"Virus Replication","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D034622","descriptor_name":"RNA Interference","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D034622","descriptor_name":"RNA Interference","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D034622","descriptor_name":"RNA Interference","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055785","descriptor_name":"Gene Knockdown Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055785","descriptor_name":"Gene Knockdown Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055785","descriptor_name":"Gene Knockdown Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1003235","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1003235","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003235&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:24068911","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24068911","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:RePEc:plo:pcbi00:1003235","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003235","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:046c3c9090bd45fb8c3c99c994f077bb","is_oa":false,"landing_page_url":"https://doaj.org/article/046c3c9090bd45fb8c3c99c994f077bb","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 9, Iss 9, p e1003235 (2013)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2772003","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3777922","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/803730","is_oa":true,"landing_page_url":"https://figshare.com/articles/_Limited_Agreement_of_Independent_RNAi_Screens_for_Virus_Required_Host_Genes_Owes_More_to_False_Negative_than_False_Positive_Factors_/803730","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1003235","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1003235","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003235&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2890725500","display_name":"RI: Small: Active Learning with Rich Query Types on Networks and Trees","funder_award_id":"1218880","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G526666672","display_name":null,"funder_award_id":"GM35072","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306082","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2152205024.pdf","grobid_xml":"https://content.openalex.org/works/W2152205024.grobid-xml"},"referenced_works_count":52,"referenced_works":["https://openalex.org/W361255987","https://openalex.org/W1520083411","https://openalex.org/W1965660134","https://openalex.org/W1969941684","https://openalex.org/W1972226937","https://openalex.org/W1974482866","https://openalex.org/W1974683325","https://openalex.org/W1989026134","https://openalex.org/W1993212909","https://openalex.org/W2003988251","https://openalex.org/W2008944797","https://openalex.org/W2015054674","https://openalex.org/W2017642141","https://openalex.org/W2024235347","https://openalex.org/W2027954222","https://openalex.org/W2042703493","https://openalex.org/W2043093337","https://openalex.org/W2043698583","https://openalex.org/W2048524642","https://openalex.org/W2048534805","https://openalex.org/W2057466644","https://openalex.org/W2060173726","https://openalex.org/W2060987350","https://openalex.org/W2068880841","https://openalex.org/W2069881735","https://openalex.org/W2070924692","https://openalex.org/W2071168915","https://openalex.org/W2074410038","https://openalex.org/W2079709157","https://openalex.org/W2087259011","https://openalex.org/W2098044274","https://openalex.org/W2099305058","https://openalex.org/W2117405110","https://openalex.org/W2126267084","https://openalex.org/W2127864764","https://openalex.org/W2132140476","https://openalex.org/W2139119391","https://openalex.org/W2143313350","https://openalex.org/W2146368895","https://openalex.org/W2149232113","https://openalex.org/W2150091347","https://openalex.org/W2150758953","https://openalex.org/W2162424885","https://openalex.org/W2164928164","https://openalex.org/W2164995049","https://openalex.org/W2170851096","https://openalex.org/W2171675404","https://openalex.org/W2171893553","https://openalex.org/W3104929327","https://openalex.org/W4230455772","https://openalex.org/W4245424013","https://openalex.org/W4301464768"],"related_works":["https://openalex.org/W2162191803","https://openalex.org/W2682601159","https://openalex.org/W4389981580","https://openalex.org/W2023372797","https://openalex.org/W2766455193","https://openalex.org/W2100624829","https://openalex.org/W2098803005","https://openalex.org/W1492866124","https://openalex.org/W2123630845","https://openalex.org/W2067832820"],"abstract_inverted_index":{"Systematic,":[0],"genome-wide":[1,28,52,259],"RNA":[2],"interference":[3],"(RNAi)":[4],"analysis":[5],"is":[6,30,235],"a":[7,92,161,178,190],"powerful":[8],"approach":[9,164,199],"to":[10,87,165,175,208,238,255],"identify":[11],"gene":[12,82,121,130,244],"functions":[13],"that":[14,31,55,128],"support":[15],"or":[16],"modulate":[17],"selected":[18],"biological":[19],"processes.":[20],"An":[21],"emerging":[22],"challenge":[23],"shared":[24],"with":[25],"some":[26],"other":[27,214],"approaches":[29],"independent":[32,134,143],"RNAi":[33,53],"studies":[34,54,65,116,135,234],"often":[35],"show":[36],"limited":[37,179],"agreement":[38,114],"in":[39,60,99,139,189],"their":[40],"lists":[41,83,108,131],"of":[42,72,94,105,169,181,186,204,216,258],"implicated":[43,132],"genes.":[44],"To":[45],"better":[46],"understand":[47],"this,":[48],"we":[49,126],"analyzed":[50],"four":[51,81],"identified":[56,67],"host":[57],"genes":[58,187,206],"involved":[59,188,207],"influenza":[61,193],"virus":[62,194],"replication.":[63],"These":[64,246],"collectively":[66],"and":[68,171,174,212,219,248,253],"validated":[69],"the":[70,80,120,129,167,183,201,230],"roles":[71],"614":[73],"cell":[74,205],"genes,":[75],"but":[76],"pair-wise":[77,103],"overlap":[78,104,232],"among":[79,115],"was":[84,109],"only":[85],"3%":[86],"15%":[88],"(average":[89],"6.7%).":[90],"However,":[91],"number":[93,180,185,203],"functional":[95,144],"categories":[96],"were":[97,136],"overrepresented":[98],"multiple":[100,213,256],"studies.":[101],"The":[102],"these":[106],"enriched-category":[107],"high,":[110],"\u223c19%,":[111],"implying":[112],"more":[113],"than":[117,154,242],"apparent":[118],"at":[119,150],"level.":[122],"Probing":[123],"this":[124,196],"further,":[125],"found":[127],"by":[133,142,156],"highly":[137],"connected":[138],"interacting":[140],"networks":[141],"measures":[145],"such":[146],"as":[147],"protein-protein":[148],"interactions,":[149],"rates":[151],"significantly":[152],"higher":[153],"predicted":[155],"chance.":[157],"We":[158],"also":[159],"developed":[160],"general,":[162],"model-based":[163],"gauge":[166],"effects":[168],"false-positive":[170,243],"false-negative":[172],"factors":[173],"estimate,":[176],"from":[177],"studies,":[182],"total":[184,202],"process.":[191],"For":[192],"replication,":[195],"novel":[197],"statistical":[198],"estimates":[200],"be":[209],"\u223c2,800.":[210],"This":[211],"aspects":[215],"our":[217],"experimental":[218],"computational":[220],"results":[221,247],"imply":[222],"that,":[223],"when":[224],"following":[225],"good":[226],"quality":[227],"control":[228],"practices,":[229],"low":[231],"between":[233],"primarily":[236],"due":[237],"false":[239],"negatives":[240],"rather":[241],"identifications.":[245],"methods":[249],"have":[250],"implications":[251],"for":[252],"applications":[254],"forms":[257],"analysis.":[260]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":10},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":7}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
