{"id":"https://openalex.org/W2007159691","doi":"https://doi.org/10.1371/journal.pcbi.1003103","title":"Gag-Pol Processing during HIV-1 Virion Maturation: A Systems Biology Approach","display_name":"Gag-Pol Processing during HIV-1 Virion Maturation: A Systems Biology Approach","publication_year":2013,"publication_date":"2013-06-06","ids":{"openalex":"https://openalex.org/W2007159691","doi":"https://doi.org/10.1371/journal.pcbi.1003103","mag":"2007159691","pmid":"https://pubmed.ncbi.nlm.nih.gov/23754941"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1003103","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1003103","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003103&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003103&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025012983","display_name":"Bal\u00e1zs K\u00f6nny\u0171","orcid":"https://orcid.org/0000-0002-9729-1224"},"institutions":[{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Bal\u00e1zs K\u00f6nny\u0171","raw_affiliation_strings":["Institute of Biology, E\u00f6tv\u00f6s Lor\u00e1nd University, Budapest, Hungary"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biology, E\u00f6tv\u00f6s Lor\u00e1nd University, Budapest, Hungary","institution_ids":["https://openalex.org/I106118109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033516543","display_name":"S. Kashif Sadiq","orcid":"https://orcid.org/0000-0002-5112-0307"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Pompeu Fabra University","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"S. Kashif Sadiq","raw_affiliation_strings":["Computational Biophysics Laboratory (GRIB-IMIM), Universitat Pompeu Fabra, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biophysics Laboratory (GRIB-IMIM), Universitat Pompeu Fabra, Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026884101","display_name":"Tam\u00e1s Tur\u00e1nyi","orcid":"https://orcid.org/0000-0002-1461-165X"},"institutions":[{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Tam\u00e1s Tur\u00e1nyi","raw_affiliation_strings":["Institute of Chemistry, E\u00f6tv\u00f6s Lor\u00e1nd University, Budapest, Hungary","Institute of Chemistry, E\u00f6tv\u00f6s Lor\u00e1nd University,Budapest,Hungary"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Chemistry, E\u00f6tv\u00f6s Lor\u00e1nd University, Budapest, Hungary","institution_ids":["https://openalex.org/I106118109"]},{"raw_affiliation_string":"Institute of Chemistry, E\u00f6tv\u00f6s Lor\u00e1nd University,Budapest,Hungary","institution_ids":["https://openalex.org/I106118109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083525912","display_name":"Rita H\u00edrmond\u00f3","orcid":"https://orcid.org/0000-0002-0393-3290"},"institutions":[{"id":"https://openalex.org/I4210151515","display_name":"Institute of Molecular Life Sciences","ror":"https://ror.org/04t4pws42","country_code":"HU","type":"facility","lineage":["https://openalex.org/I4210151515","https://openalex.org/I4387152226","https://openalex.org/I80251312"]},{"id":"https://openalex.org/I7597260","display_name":"Hungarian Academy of Sciences","ror":"https://ror.org/02ks8qq67","country_code":"HU","type":"funder","lineage":["https://openalex.org/I7597260"]},{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Rita H\u00edrmond\u00f3","raw_affiliation_strings":["Institute of Biology, E\u00f6tv\u00f6s Lor\u00e1nd University, Budapest, Hungary","Institute of Enzymology, Hungarian Academy of Sciences, Budapest, Hungary"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biology, E\u00f6tv\u00f6s Lor\u00e1nd University, Budapest, Hungary","institution_ids":["https://openalex.org/I106118109"]},{"raw_affiliation_string":"Institute of Enzymology, Hungarian Academy of Sciences, Budapest, Hungary","institution_ids":["https://openalex.org/I4210151515","https://openalex.org/I7597260"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091231669","display_name":"B\u00e1rbara M\u00fcller","orcid":"https://orcid.org/0000-0001-5726-5585"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Barbara M\u00fcller","raw_affiliation_strings":["Department of Infectious Diseases, Virology, University of Heidelberg, Heidelberg, Germany","Dept. of Infectious Diseases/Virology, University of Heidelberg, Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Infectious Diseases, Virology, University of Heidelberg, Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]},{"raw_affiliation_string":"Dept. of Infectious Diseases/Virology, University of Heidelberg, Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036005209","display_name":"Hans\u2010Georg Kr\u00e4usslich","orcid":"https://orcid.org/0000-0002-8756-329X"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hans-Georg Kr\u00e4usslich","raw_affiliation_strings":["Department of Infectious Diseases, Virology, University of Heidelberg, Heidelberg, Germany","Dept. of Infectious Diseases/Virology, University of Heidelberg, Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Infectious Diseases, Virology, University of Heidelberg, Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]},{"raw_affiliation_string":"Dept. of Infectious Diseases/Virology, University of Heidelberg, Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066453821","display_name":"Peter V. Coveney","orcid":"https://orcid.org/0000-0002-8787-7256"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Peter V. Coveney","raw_affiliation_strings":["Centre for Computational Science, Christopher Ingold Laboratories, University College London, London, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Computational Science, Christopher Ingold Laboratories, University College London, London, United Kingdom","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063657532","display_name":"Viktor M\u00fcller","orcid":"https://orcid.org/0000-0001-8212-4880"},"institutions":[{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]},{"id":"https://openalex.org/I7597260","display_name":"Hungarian Academy of Sciences","ror":"https://ror.org/02ks8qq67","country_code":"HU","type":"funder","lineage":["https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":true,"raw_author_name":"Viktor M\u00fcller","raw_affiliation_strings":["Institute of Biology, E\u00f6tv\u00f6s Lor\u00e1nd University, Budapest, Hungary","Research Group of Theoretical Biology and Evolutionary Ecology, E\u00f6tv\u00f6s Lor\u00e1nd University and the Hungarian Academy of Sciences, Budapest, Hungary"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biology, E\u00f6tv\u00f6s Lor\u00e1nd University, Budapest, Hungary","institution_ids":["https://openalex.org/I106118109"]},{"raw_affiliation_string":"Research Group of Theoretical Biology and Evolutionary Ecology, E\u00f6tv\u00f6s Lor\u00e1nd University and the Hungarian Academy of Sciences, Budapest, Hungary","institution_ids":["https://openalex.org/I7597260","https://openalex.org/I106118109"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5063657532"],"corresponding_institution_ids":["https://openalex.org/I106118109","https://openalex.org/I7597260"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":2.0121,"has_fulltext":true,"cited_by_count":62,"citation_normalized_percentile":{"value":0.86460968,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"9","issue":"6","first_page":"e1003103","last_page":"e1003103"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10526","display_name":"HIV/AIDS drug development and treatment","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/polyproteins","display_name":"Polyproteins","score":0.8975908756256104},{"id":"https://openalex.org/keywords/cleavage","display_name":"Cleavage (geology)","score":0.718634307384491},{"id":"https://openalex.org/keywords/protease","display_name":"Protease","score":0.6058796644210815},{"id":"https://openalex.org/keywords/hiv-1-protease","display_name":"HIV-1 protease","score":0.5095468163490295},{"id":"https://openalex.org/keywords/human-immunodeficiency-virus","display_name":"Human immunodeficiency virus (HIV)","score":0.49790167808532715},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.43708330392837524},{"id":"https://openalex.org/keywords/enzyme-kinetics","display_name":"Enzyme kinetics","score":0.43425557017326355},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4206869900226593},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.4054846167564392},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.3869597911834717},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3302627503871918},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.2860531806945801},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.23149698972702026},{"id":"https://openalex.org/keywords/active-site","display_name":"Active site","score":0.11732763051986694}],"concepts":[{"id":"https://openalex.org/C2910895815","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Polyproteins","level":4,"score":0.8975908756256104},{"id":"https://openalex.org/C175156509","wikidata":"https://www.wikidata.org/wiki/Q1990218","display_name":"Cleavage (geology)","level":3,"score":0.718634307384491},{"id":"https://openalex.org/C2776714187","wikidata":"https://www.wikidata.org/wiki/Q212410","display_name":"Protease","level":3,"score":0.6058796644210815},{"id":"https://openalex.org/C2777583353","wikidata":"https://www.wikidata.org/wiki/Q410261","display_name":"HIV-1 protease","level":4,"score":0.5095468163490295},{"id":"https://openalex.org/C3013748606","wikidata":"https://www.wikidata.org/wiki/Q15787","display_name":"Human immunodeficiency virus (HIV)","level":2,"score":0.49790167808532715},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.43708330392837524},{"id":"https://openalex.org/C56856141","wikidata":"https://www.wikidata.org/wiki/Q883112","display_name":"Enzyme kinetics","level":4,"score":0.43425557017326355},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4206869900226593},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.4054846167564392},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.3869597911834717},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3302627503871918},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2860531806945801},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.23149698972702026},{"id":"https://openalex.org/C41183919","wikidata":"https://www.wikidata.org/wiki/Q423026","display_name":"Active site","level":3,"score":0.11732763051986694},{"id":"https://openalex.org/C43369102","wikidata":"https://www.wikidata.org/wiki/Q2307625","display_name":"Fracture (geology)","level":2,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D014771","descriptor_name":"Virion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014771","descriptor_name":"Virion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014771","descriptor_name":"Virion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014771","descriptor_name":"Virion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D015750","descriptor_name":"Genes, gag","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015750","descriptor_name":"Genes, gag","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015750","descriptor_name":"Genes, gag","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015750","descriptor_name":"Genes, gag","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015751","descriptor_name":"Genes, pol","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015751","descriptor_name":"Genes, pol","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015751","descriptor_name":"Genes, pol","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015751","descriptor_name":"Genes, pol","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059748","descriptor_name":"Proteolysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059748","descriptor_name":"Proteolysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059748","descriptor_name":"Proteolysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059748","descriptor_name":"Proteolysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1371/journal.pcbi.1003103","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1003103","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003103&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:23754941","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23754941","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:repositori-api.upf.edu:10230/59146","is_oa":true,"landing_page_url":"http://hdl.handle.net/10230/59146","pdf_url":null,"source":{"id":"https://openalex.org/S4306402615","display_name":"Repositori digital de la UPF (Universitat Pompeu Fabra)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170486558","host_organization_name":"Universitat Pompeu Fabra","host_organization_lineage":["https://openalex.org/I170486558"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:doaj.org/article:82ac4668fad6452f9ba6b8cf8c9f086f","is_oa":true,"landing_page_url":"https://doaj.org/article/82ac4668fad6452f9ba6b8cf8c9f086f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 9, Iss 6, p e1003103 (2013)","raw_type":"article"},{"id":"pmh:oai:edit.elte.hu:10831/91285","is_oa":true,"landing_page_url":"http://hdl.handle.net/10831/91285","pdf_url":null,"source":{"id":"https://openalex.org/S4306400126","display_name":"ELTE Digital Institutional Repository (EDIT) (E\u00f6tv\u00f6s Lor\u00e1nd University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I106118109","host_organization_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","host_organization_lineage":["https://openalex.org/I106118109"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:2674930","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3675044","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/712893","is_oa":true,"landing_page_url":"https://figshare.com/articles/_Gag_Pol_Processing_during_HIV_1_Virion_Maturation_A_Systems_Biology_Approach_/712893","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1003103","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1003103","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003103&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.7400000095367432,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G1083948670","display_name":null,"funder_award_id":"NF72791","funder_id":"https://openalex.org/F4320321994","funder_display_name":"Hungarian Scientific Research Fund"},{"id":"https://openalex.org/G2045788895","display_name":"UK Consortium on Mesoscale Engineering Sciences (UKCOMES)","funder_award_id":"EP/L00030X/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G2107972360","display_name":null,"funder_award_id":"MR/K006584/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G4565091230","display_name":"Large Scale Lattice Boltzmann for Biocolloidal Systems","funder_award_id":"EP/I034602/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G4751909915","display_name":null,"funder_award_id":"EP/L00030X/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G5626114625","display_name":null,"funder_award_id":"K84054","funder_id":"https://openalex.org/F4320321994","funder_display_name":"Hungarian Scientific Research Fund"},{"id":"https://openalex.org/G8087309654","display_name":null,"funder_award_id":"EP/I034602/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321994","display_name":"Hungarian Scientific Research Fund","ror":"https://ror.org/00v349e63"},{"id":"https://openalex.org/F4320322192","display_name":"Magyar Tudom\u00e1nyos Akad\u00e9mia","ror":"https://ror.org/02ks8qq67"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2007159691.pdf","grobid_xml":"https://content.openalex.org/works/W2007159691.grobid-xml"},"referenced_works_count":88,"referenced_works":["https://openalex.org/W126493026","https://openalex.org/W1227234993","https://openalex.org/W1497441623","https://openalex.org/W1507598539","https://openalex.org/W1552946031","https://openalex.org/W1569669680","https://openalex.org/W1577614444","https://openalex.org/W1591593323","https://openalex.org/W1594514074","https://openalex.org/W1595234827","https://openalex.org/W1898585322","https://openalex.org/W1924577704","https://openalex.org/W1964093787","https://openalex.org/W1965384227","https://openalex.org/W1967398944","https://openalex.org/W1970930966","https://openalex.org/W1971637353","https://openalex.org/W1974224443","https://openalex.org/W1977135313","https://openalex.org/W1977218442","https://openalex.org/W1981078831","https://openalex.org/W1982440127","https://openalex.org/W1985604746","https://openalex.org/W1985890891","https://openalex.org/W1986015062","https://openalex.org/W1986232807","https://openalex.org/W1989568559","https://openalex.org/W1994663540","https://openalex.org/W1999362507","https://openalex.org/W1999749052","https://openalex.org/W2004832262","https://openalex.org/W2011153626","https://openalex.org/W2014734546","https://openalex.org/W2017953463","https://openalex.org/W2023670906","https://openalex.org/W2027300565","https://openalex.org/W2028124297","https://openalex.org/W2033236966","https://openalex.org/W2034895572","https://openalex.org/W2034897068","https://openalex.org/W2035095394","https://openalex.org/W2041321679","https://openalex.org/W2042649563","https://openalex.org/W2044162822","https://openalex.org/W2045408268","https://openalex.org/W2050498291","https://openalex.org/W2052389336","https://openalex.org/W2055197860","https://openalex.org/W2055478901","https://openalex.org/W2063531346","https://openalex.org/W2065319623","https://openalex.org/W2073967843","https://openalex.org/W2075810156","https://openalex.org/W2076965602","https://openalex.org/W2077795431","https://openalex.org/W2082650600","https://openalex.org/W2083877674","https://openalex.org/W2087098674","https://openalex.org/W2088345598","https://openalex.org/W2088359450","https://openalex.org/W2089118919","https://openalex.org/W2097410498","https://openalex.org/W2098579568","https://openalex.org/W2103562758","https://openalex.org/W2107200293","https://openalex.org/W2107911156","https://openalex.org/W2112198714","https://openalex.org/W2112560895","https://openalex.org/W2112727291","https://openalex.org/W2118515271","https://openalex.org/W2129836134","https://openalex.org/W2129955668","https://openalex.org/W2142992734","https://openalex.org/W2143666216","https://openalex.org/W2147157181","https://openalex.org/W2152293013","https://openalex.org/W2152539875","https://openalex.org/W2152783510","https://openalex.org/W2157791496","https://openalex.org/W2162531088","https://openalex.org/W2163005803","https://openalex.org/W2167154952","https://openalex.org/W2168736565","https://openalex.org/W2169408873","https://openalex.org/W2314796337","https://openalex.org/W2432517183","https://openalex.org/W2582743722","https://openalex.org/W2981264952"],"related_works":["https://openalex.org/W2050498291","https://openalex.org/W2080576612","https://openalex.org/W2054728806","https://openalex.org/W2015779011","https://openalex.org/W2170215368","https://openalex.org/W4385324756","https://openalex.org/W2049250591","https://openalex.org/W1982047676","https://openalex.org/W1527409215","https://openalex.org/W2014723698"],"abstract_inverted_index":{"Proteolytic":[0],"processing":[1,77],"of":[2,17,22,30,39,75,102,109,121,154,177],"Gag":[3,89],"and":[4,20,44,62,90,94,124,141,148,167,190,210],"Gag-Pol":[5,104],"polyproteins":[6],"by":[7,78],"the":[8,15,23,69,99,117,125,128,135,151,155,158,175,178,186,192,195,198,213],"viral":[9,24],"protease":[10],"(PR)":[11],"is":[12],"crucial":[13],"for":[14,53],"production":[16],"infectious":[18],"HIV-1,":[19],"inhibitors":[21,166],"PR":[25,49,165],"are":[26,180],"an":[27,202],"integral":[28],"part":[29],"current":[31],"antiretroviral":[32],"therapy.":[33],"The":[34,111],"process":[35],"has":[36],"several":[37],"layers":[38],"complexity":[40],"(multiple":[41],"cleavage":[42,86,146],"sites":[43,87],"substrates;":[45],"multiple":[46],"enzyme":[47,95,97],"forms;":[48],"auto-processing),":[50],"which":[51],"calls":[52],"a":[54],"systems":[55],"level":[56],"approach":[57],"to":[58,115,182,206],"identify":[59,116],"key":[60],"vulnerabilities":[61],"optimal":[63],"treatment":[64],"strategies.":[65],"Here":[66],"we":[67,138],"present":[68],"first":[70],"full":[71],"reaction":[72],"kinetics":[73],"model":[74,112,179],"proteolytic":[76],"HIV-1":[79],"PR,":[80],"taking":[81],"into":[82,171],"account":[83],"all":[84],"canonical":[85],"within":[88],"Gag-Pol,":[91],"intermediate":[92],"products":[93],"forms,":[96],"dimerization,":[98],"initial":[100],"auto-cleavage":[101],"full-length":[103],"as":[105,107],"well":[106],"self-cleavage":[108],"PR.":[110],"allows":[113],"us":[114],"rate":[118],"limiting":[119],"step":[120],"virion":[122],"maturation":[123,132],"parameters":[126],"with":[127,164],"strongest":[129],"effect":[130],"on":[131],"kinetics.":[133],"Using":[134],"modelling":[136],"framework,":[137],"predict":[139],"interactions":[140],"compensatory":[142],"potential":[143],"between":[144],"individual":[145],"rates":[147],"drugs,":[149],"characterize":[150],"time":[152],"course":[153],"process,":[156],"explain":[157],"steep":[159],"dose":[160],"response":[161],"curves":[162],"associated":[163],"gain":[168],"new":[169,208],"insights":[170],"drug":[172],"action.":[173],"While":[174],"results":[176],"subject":[181],"limitations":[183],"arising":[184],"from":[185,191],"simplifying":[187],"assumptions":[188],"used":[189],"uncertainties":[193],"in":[194,212],"parameter":[196],"estimates,":[197],"developed":[199],"framework":[200],"provides":[201],"extendable":[203],"open-access":[204],"platform":[205],"incorporate":[207],"data":[209],"hypotheses":[211],"future.":[214]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":1}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
