{"id":"https://openalex.org/W2041418790","doi":"https://doi.org/10.1371/journal.pcbi.1003039","title":"Host Resistance, Population Structure and the Long-Term Persistence of Bubonic Plague: Contributions of a Modelling Approach in the Malagasy Focus","display_name":"Host Resistance, Population Structure and the Long-Term Persistence of Bubonic Plague: Contributions of a Modelling Approach in the Malagasy Focus","publication_year":2013,"publication_date":"2013-05-09","ids":{"openalex":"https://openalex.org/W2041418790","doi":"https://doi.org/10.1371/journal.pcbi.1003039","mag":"2041418790","pmid":"https://pubmed.ncbi.nlm.nih.gov/23675291"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1003039","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1003039","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003039&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003039&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039365471","display_name":"Fanny Gascuel","orcid":"https://orcid.org/0000-0002-6589-9710"},"institutions":[{"id":"https://openalex.org/I113428412","display_name":"\u00c9cole Normale Sup\u00e9rieure de Lyon","ror":"https://ror.org/04zmssz18","country_code":"FR","type":"education","lineage":["https://openalex.org/I113428412","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I251321805","display_name":"Agropolis International","ror":"https://ror.org/00txxwv34","country_code":"FR","type":"other","lineage":["https://openalex.org/I251321805"]},{"id":"https://openalex.org/I4210147278","display_name":"Centre de Biologie pour la Gestion des Populations","ror":"https://ror.org/05h7ddb14","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I131077856","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I24906876","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210117091","https://openalex.org/I4210117091","https://openalex.org/I4210131494","https://openalex.org/I4210147278","https://openalex.org/I4210166444","https://openalex.org/I4399657933","https://openalex.org/I4399657933","https://openalex.org/I4405257220"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Fanny Gascuel","raw_affiliation_strings":["IRD, CBGP (UMR IRD/INRA/CIRAD/MontpellierSupAgro), Montferrier-sur-Lez, France. fanny.gascuel@college-de-france.fr","UMR CBGP - Centre de Biologie pour la Gestion des Populations (755 avenue du Campus Agropolis, 34988 Montferrier sur Lez - France)","ENS de Lyon - \u00c9cole normale sup\u00e9rieure de Lyon (15 parvis Ren\u00e9 Descartes - BP 7000 - 69342 Lyon Cedex 07 - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IRD, CBGP (UMR IRD/INRA/CIRAD/MontpellierSupAgro), Montferrier-sur-Lez, France. fanny.gascuel@college-de-france.fr","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I4210147278","https://openalex.org/I4210166444"]},{"raw_affiliation_string":"UMR CBGP - Centre de Biologie pour la Gestion des Populations (755 avenue du Campus Agropolis, 34988 Montferrier sur Lez - France)","institution_ids":["https://openalex.org/I251321805","https://openalex.org/I4210147278"]},{"raw_affiliation_string":"ENS de Lyon - \u00c9cole normale sup\u00e9rieure de Lyon (15 parvis Ren\u00e9 Descartes - BP 7000 - 69342 Lyon Cedex 07 - France)","institution_ids":["https://openalex.org/I113428412"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033797047","display_name":"Marc Choisy","orcid":"https://orcid.org/0000-0002-5187-6390"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210150114","display_name":"Oxford University Clinical Research Unit","ror":"https://ror.org/05rehad94","country_code":"VN","type":"facility","lineage":["https://openalex.org/I40120149","https://openalex.org/I4210150114","https://openalex.org/I87048295"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]}],"countries":["FR","GB","VN"],"is_corresponding":false,"raw_author_name":"Marc Choisy","raw_affiliation_strings":["IRD, UMR 224, Montpellier, France","Oxford University Clinical Research Unit-Hanoi, Hanoi, Vietnam","IRD - Institut de Recherche pour le D\u00e9veloppement (Si\u00e8ge\r\nLe Sextant \r\n44, bd de Dunkerque\r\nCS 90009\r\n13572 Marseille cedex 02 - France)","University of Oxford (Wellington Square, Oxford OX1 2JD - United Kingdom)","Institut de Recherche pour le D\u00e9veloppement"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IRD, UMR 224, Montpellier, France","institution_ids":["https://openalex.org/I4210166444"]},{"raw_affiliation_string":"Oxford University Clinical Research Unit-Hanoi, Hanoi, Vietnam","institution_ids":["https://openalex.org/I4210150114"]},{"raw_affiliation_string":"IRD - Institut de Recherche pour le D\u00e9veloppement (Si\u00e8ge\r\nLe Sextant \r\n44, bd de Dunkerque\r\nCS 90009\r\n13572 Marseille cedex 02 - France)","institution_ids":["https://openalex.org/I4210166444"]},{"raw_affiliation_string":"University of Oxford (Wellington Square, Oxford OX1 2JD - United Kingdom)","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Institut de Recherche pour le D\u00e9veloppement","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110044015","display_name":"Jean\u2010Marc Duplantier","orcid":null},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I24906876","display_name":"Institut Agro Montpellier","ror":"https://ror.org/03rnk6m14","country_code":"FR","type":"education","lineage":["https://openalex.org/I24906876","https://openalex.org/I4210117091","https://openalex.org/I4399657933"]},{"id":"https://openalex.org/I251321805","display_name":"Agropolis International","ror":"https://ror.org/00txxwv34","country_code":"FR","type":"other","lineage":["https://openalex.org/I251321805"]},{"id":"https://openalex.org/I4210147278","display_name":"Centre de Biologie pour la Gestion des Populations","ror":"https://ror.org/05h7ddb14","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I131077856","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I24906876","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210117091","https://openalex.org/I4210117091","https://openalex.org/I4210131494","https://openalex.org/I4210147278","https://openalex.org/I4210166444","https://openalex.org/I4399657933","https://openalex.org/I4399657933","https://openalex.org/I4405257220"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Jean-Marc Duplantier","raw_affiliation_strings":["IRD, CBGP (UMR IRD/INRA/CIRAD/MontpellierSupAgro), Montferrier-sur-Lez, France","UMR CBGP - Centre de Biologie pour la Gestion des Populations (755 avenue du Campus Agropolis, 34988 Montferrier sur Lez - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IRD, CBGP (UMR IRD/INRA/CIRAD/MontpellierSupAgro), Montferrier-sur-Lez, France","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I24906876","https://openalex.org/I4210147278","https://openalex.org/I4210166444"]},{"raw_affiliation_string":"UMR CBGP - Centre de Biologie pour la Gestion des Populations (755 avenue du Campus Agropolis, 34988 Montferrier sur Lez - France)","institution_ids":["https://openalex.org/I251321805","https://openalex.org/I4210147278"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026865511","display_name":"Florence D\u00e9barre","orcid":"https://orcid.org/0000-0003-2497-833X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I155093810","display_name":"University of Idaho","ror":"https://ror.org/03hbp5t65","country_code":"US","type":"education","lineage":["https://openalex.org/I155093810"]},{"id":"https://openalex.org/I4210105943","display_name":"Institut des Sciences de l'Evolution de Montpellier","ror":"https://ror.org/01cah1n37","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I131077856","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I159885104","https://openalex.org/I19894307","https://openalex.org/I2746051580","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210105943","https://openalex.org/I4210107625","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]},{"id":"https://openalex.org/I4405260628","display_name":"University of British Columbia, Okanagan Campus","ror":"https://ror.org/04241wz75","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490","https://openalex.org/I4405260628"]},{"id":"https://openalex.org/I822440","display_name":"Okanagan University College","ror":"https://ror.org/02mxmh518","country_code":"CA","type":"education","lineage":["https://openalex.org/I822440"]}],"countries":["CA","FR","US"],"is_corresponding":false,"raw_author_name":"Florence D\u00e9barre","raw_affiliation_strings":["CNRS, UMR 5554 ISEM, Montpellier, France","Department of Zoology, University of British Columbia, Vancouver, Canada","University of Idaho, Moscow, Idaho, United States of America","UBC - University of British Columbia (Vancouver Campus, , 2329 West Mall, Vancouver, BC, V6T 1Z4 / \r\nOkanagan Campus, 3333 University Way, Kelowna, BC, V1V 1V7 - Canada)","University of Idaho [Moscow, USA] (875 Perimeter Drive,  Moscow, ID 83844 - United States)","UMR ISEM - Institut des Sciences de l'Evolution de Montpellier (Place E. Bataillon CC 064 34095 Montpellier Cedex 05 - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNRS, UMR 5554 ISEM, Montpellier, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210105943"]},{"raw_affiliation_string":"Department of Zoology, University of British Columbia, Vancouver, Canada","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"University of Idaho, Moscow, Idaho, United States of America","institution_ids":["https://openalex.org/I155093810"]},{"raw_affiliation_string":"UBC - University of British Columbia (Vancouver Campus, , 2329 West Mall, Vancouver, BC, V6T 1Z4 / \r\nOkanagan Campus, 3333 University Way, Kelowna, BC, V1V 1V7 - Canada)","institution_ids":["https://openalex.org/I141945490","https://openalex.org/I4405260628","https://openalex.org/I822440"]},{"raw_affiliation_string":"University of Idaho [Moscow, USA] (875 Perimeter Drive,  Moscow, ID 83844 - United States)","institution_ids":["https://openalex.org/I155093810"]},{"raw_affiliation_string":"UMR ISEM - Institut des Sciences de l'Evolution de Montpellier (Place E. Bataillon CC 064 34095 Montpellier Cedex 05 - France)","institution_ids":["https://openalex.org/I4210105943"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050611119","display_name":"Carine Brouat","orcid":"https://orcid.org/0000-0001-6167-308X"},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I24906876","display_name":"Institut Agro Montpellier","ror":"https://ror.org/03rnk6m14","country_code":"FR","type":"education","lineage":["https://openalex.org/I24906876","https://openalex.org/I4210117091","https://openalex.org/I4399657933"]},{"id":"https://openalex.org/I251321805","display_name":"Agropolis International","ror":"https://ror.org/00txxwv34","country_code":"FR","type":"other","lineage":["https://openalex.org/I251321805"]},{"id":"https://openalex.org/I4210147278","display_name":"Centre de Biologie pour la Gestion des Populations","ror":"https://ror.org/05h7ddb14","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I131077856","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I24906876","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210117091","https://openalex.org/I4210117091","https://openalex.org/I4210131494","https://openalex.org/I4210147278","https://openalex.org/I4210166444","https://openalex.org/I4399657933","https://openalex.org/I4399657933","https://openalex.org/I4405257220"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Carine Brouat","raw_affiliation_strings":["IRD, CBGP (UMR IRD/INRA/CIRAD/MontpellierSupAgro), Montferrier-sur-Lez, France","UMR CBGP - Centre de Biologie pour la Gestion des Populations (755 avenue du Campus Agropolis, 34988 Montferrier sur Lez - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IRD, CBGP (UMR IRD/INRA/CIRAD/MontpellierSupAgro), Montferrier-sur-Lez, France","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I24906876","https://openalex.org/I4210147278","https://openalex.org/I4210166444"]},{"raw_affiliation_string":"UMR CBGP - Centre de Biologie pour la Gestion des Populations (755 avenue du Campus Agropolis, 34988 Montferrier sur Lez - France)","institution_ids":["https://openalex.org/I251321805","https://openalex.org/I4210147278"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":14,"corresponding_author_ids":["https://openalex.org/A5039365471"],"corresponding_institution_ids":["https://openalex.org/I113428412","https://openalex.org/I131077856","https://openalex.org/I251321805","https://openalex.org/I4210147278","https://openalex.org/I4210166444"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":1.2652,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.80887515,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"9","issue":"5","first_page":"e1003039","last_page":"e1003039"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12232","display_name":"Yersinia bacterium, plague, ectoparasites research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12232","display_name":"Yersinia bacterium, plague, ectoparasites research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11913","display_name":"Animal Ecology and Behavior Studies","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12492","display_name":"Zoonotic diseases and public health","score":0.9883000254631042,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/plague","display_name":"Plague (disease)","score":0.8963333368301392},{"id":"https://openalex.org/keywords/metapopulation","display_name":"Metapopulation","score":0.85426926612854},{"id":"https://openalex.org/keywords/yersinia-pestis","display_name":"Yersinia pestis","score":0.6062293648719788},{"id":"https://openalex.org/keywords/persistence","display_name":"Persistence (discontinuity)","score":0.603735625743866},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5959948301315308},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.5635266900062561},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5541747808456421},{"id":"https://openalex.org/keywords/extinction","display_name":"Extinction (optical mineralogy)","score":0.5457796454429626},{"id":"https://openalex.org/keywords/zoonosis","display_name":"Zoonosis","score":0.46849900484085083},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.4608573019504547},{"id":"https://openalex.org/keywords/susceptible-individual","display_name":"Susceptible individual","score":0.45827269554138184},{"id":"https://openalex.org/keywords/zoology","display_name":"Zoology","score":0.366848886013031},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.3508680462837219},{"id":"https://openalex.org/keywords/virulence","display_name":"Virulence","score":0.26262661814689636},{"id":"https://openalex.org/keywords/biological-dispersal","display_name":"Biological dispersal","score":0.2523029148578644},{"id":"https://openalex.org/keywords/demography","display_name":"Demography","score":0.24477723240852356},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.24167007207870483},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09247922897338867}],"concepts":[{"id":"https://openalex.org/C2778059882","wikidata":"https://www.wikidata.org/wiki/Q133780","display_name":"Plague (disease)","level":2,"score":0.8963333368301392},{"id":"https://openalex.org/C189569837","wikidata":"https://www.wikidata.org/wiki/Q954495","display_name":"Metapopulation","level":4,"score":0.85426926612854},{"id":"https://openalex.org/C2778222588","wikidata":"https://www.wikidata.org/wiki/Q153875","display_name":"Yersinia pestis","level":4,"score":0.6062293648719788},{"id":"https://openalex.org/C2781009140","wikidata":"https://www.wikidata.org/wiki/Q7170389","display_name":"Persistence (discontinuity)","level":2,"score":0.603735625743866},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5959948301315308},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.5635266900062561},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5541747808456421},{"id":"https://openalex.org/C101991246","wikidata":"https://www.wikidata.org/wiki/Q5422078","display_name":"Extinction (optical mineralogy)","level":2,"score":0.5457796454429626},{"id":"https://openalex.org/C2776353676","wikidata":"https://www.wikidata.org/wiki/Q182672","display_name":"Zoonosis","level":2,"score":0.46849900484085083},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.4608573019504547},{"id":"https://openalex.org/C52103748","wikidata":"https://www.wikidata.org/wiki/Q2624927","display_name":"Susceptible individual","level":3,"score":0.45827269554138184},{"id":"https://openalex.org/C90856448","wikidata":"https://www.wikidata.org/wiki/Q431","display_name":"Zoology","level":1,"score":0.366848886013031},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.3508680462837219},{"id":"https://openalex.org/C60987743","wikidata":"https://www.wikidata.org/wiki/Q1460232","display_name":"Virulence","level":3,"score":0.26262661814689636},{"id":"https://openalex.org/C47559259","wikidata":"https://www.wikidata.org/wiki/Q778143","display_name":"Biological dispersal","level":3,"score":0.2523029148578644},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.24477723240852356},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.24167007207870483},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09247922897338867},{"id":"https://openalex.org/C187320778","wikidata":"https://www.wikidata.org/wiki/Q1349130","display_name":"Geotechnical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004463","descriptor_name":"Ecology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004463","descriptor_name":"Ecology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004463","descriptor_name":"Ecology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005298","descriptor_name":"Fertility","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005298","descriptor_name":"Fertility","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005298","descriptor_name":"Fertility","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005423","descriptor_name":"Siphonaptera","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D005423","descriptor_name":"Siphonaptera","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D005423","descriptor_name":"Siphonaptera","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D008270","descriptor_name":"Madagascar","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D008270","descriptor_name":"Madagascar","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D008270","descriptor_name":"Madagascar","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010930","descriptor_name":"Plague","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010930","descriptor_name":"Plague","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010930","descriptor_name":"Plague","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010930","descriptor_name":"Plague","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D010930","descriptor_name":"Plague","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D010930","descriptor_name":"Plague","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D010930","descriptor_name":"Plague","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D010930","descriptor_name":"Plague","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D010930","descriptor_name":"Plague","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D010930","descriptor_name":"Plague","qualifier_ui":"Q000635","qualifier_name":"transmission","is_major_topic":false},{"descriptor_ui":"D010930","descriptor_name":"Plague","qualifier_ui":"Q000635","qualifier_name":"transmission","is_major_topic":false},{"descriptor_ui":"D010930","descriptor_name":"Plague","qualifier_ui":"Q000635","qualifier_name":"transmission","is_major_topic":false},{"descriptor_ui":"D019353","descriptor_name":"Endemic Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019353","descriptor_name":"Endemic Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019353","descriptor_name":"Endemic Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060467","descriptor_name":"Disease Resistance","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060467","descriptor_name":"Disease Resistance","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060467","descriptor_name":"Disease Resistance","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1371/journal.pcbi.1003039","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1003039","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003039&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:23675291","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23675291","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.797.9351","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.797.9351","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/b0/01/pcbi.1003039.PMC3649974.pdf","raw_type":"text"},{"id":"pmh:oai:HAL:hal-02646316v1","is_oa":false,"landing_page_url":"https://hal.inrae.fr/hal-02646316","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, 2013, 9 (5), &#x27E8;10.1371/journal.pcbi.1003039&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:RePEc:plo:pcbi00:1003039","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003039","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:16b11a91176b47c5a2f8fd01893aa50e","is_oa":true,"landing_page_url":"https://doaj.org/article/16b11a91176b47c5a2f8fd01893aa50e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 9, Iss 5, p e1003039 (2013)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2651654","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3649974","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/700954","is_oa":true,"landing_page_url":"https://figshare.com/articles/_Host_Resistance_Population_Structure_and_the_Long_Term_Persistence_of_Bubonic_Plague_Contributions_of_a_Modelling_Approach_in_the_Malagasy_Focus_/700954","pdf_url":null,"source":{"id":"https://openalex.org/S4306402621","display_name":"INDIGO (University of Illinois at Chicago)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I39422238","host_organization_name":"University of Illinois Chicago","host_organization_lineage":["https://openalex.org/I39422238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1003039","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1003039","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003039&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G1161401766","display_name":"Viet Nam Major Overseas Programme Core Grant Renewal 2010-2015.","funder_award_id":"089276","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G315784146","display_name":"Collaborative Research: A Unified Theoretical Approach to Community Coevolution","funder_award_id":"0540392","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2041418790.pdf","grobid_xml":"https://content.openalex.org/works/W2041418790.grobid-xml"},"referenced_works_count":72,"referenced_works":["https://openalex.org/W294523417","https://openalex.org/W344280238","https://openalex.org/W1502700877","https://openalex.org/W1537917268","https://openalex.org/W1555057209","https://openalex.org/W1598151292","https://openalex.org/W1652308581","https://openalex.org/W1813609667","https://openalex.org/W1965433670","https://openalex.org/W1969321150","https://openalex.org/W1973148490","https://openalex.org/W1975532397","https://openalex.org/W1978853593","https://openalex.org/W1988041861","https://openalex.org/W1993693094","https://openalex.org/W1996917290","https://openalex.org/W1997625557","https://openalex.org/W2010365240","https://openalex.org/W2018205430","https://openalex.org/W2042244061","https://openalex.org/W2043179505","https://openalex.org/W2045926447","https://openalex.org/W2048471787","https://openalex.org/W2064559289","https://openalex.org/W2068977490","https://openalex.org/W2075358898","https://openalex.org/W2079123460","https://openalex.org/W2081318069","https://openalex.org/W2081527029","https://openalex.org/W2085140951","https://openalex.org/W2087411804","https://openalex.org/W2095564694","https://openalex.org/W2103960284","https://openalex.org/W2104595316","https://openalex.org/W2110780763","https://openalex.org/W2112372513","https://openalex.org/W2115257728","https://openalex.org/W2116592328","https://openalex.org/W2126147958","https://openalex.org/W2130203599","https://openalex.org/W2136829296","https://openalex.org/W2140635656","https://openalex.org/W2141816261","https://openalex.org/W2148295468","https://openalex.org/W2148348477","https://openalex.org/W2151373306","https://openalex.org/W2155418451","https://openalex.org/W2155951261","https://openalex.org/W2159481668","https://openalex.org/W2162083166","https://openalex.org/W2162812395","https://openalex.org/W2163262773","https://openalex.org/W2164901462","https://openalex.org/W2173333658","https://openalex.org/W2176341219","https://openalex.org/W2202786594","https://openalex.org/W2281699267","https://openalex.org/W2327049868","https://openalex.org/W2346347429","https://openalex.org/W2407961193","https://openalex.org/W2418365931","https://openalex.org/W2431849698","https://openalex.org/W2543439797","https://openalex.org/W2800026737","https://openalex.org/W4235187279","https://openalex.org/W4250930476","https://openalex.org/W4255650793","https://openalex.org/W4302896087","https://openalex.org/W4388324015","https://openalex.org/W6630095281","https://openalex.org/W6688140266","https://openalex.org/W6697636680"],"related_works":["https://openalex.org/W2971898375","https://openalex.org/W2365829171","https://openalex.org/W2145805955","https://openalex.org/W1973437440","https://openalex.org/W2765335396","https://openalex.org/W2098387568","https://openalex.org/W2157740","https://openalex.org/W2979673352","https://openalex.org/W2141816261","https://openalex.org/W2349225948"],"abstract_inverted_index":{"Although":[0],"bubonic":[1],"plague":[2,32,42,45,85,89,164,200],"is":[3,33,99,125,142],"an":[4],"endemic":[5,29,100],"zoonosis":[6],"in":[7,48,91,104,133,174,201],"many":[8],"countries":[9],"around":[10],"the":[11,13,17,28,39,62,70,77,102,137,152,171,175,183,186,196],"world,":[12],"factors":[14,68],"responsible":[15],"for":[16,163],"persistence":[18,30,72,147],"of":[19,31,41,56,64,66,73,81,84,113,139,148,155,177,182,188,199],"this":[20,97,114],"highly":[21],"virulent":[22],"disease":[23,98],"remain":[24],"poorly":[25],"known.":[26],"Classically,":[27],"suspected":[34],"to":[35,38,52,144,167,194],"be":[36],"due":[37],"coexistence":[40],"resistant":[43,140],"and":[44,79,110,116,150,170,179],"susceptible":[46,156],"rodents":[47],"natural":[49],"foci,":[50],"and/or":[51],"a":[53,82,93],"metapopulation":[54,153],"structure":[55,154],"reservoirs.":[57],"Here,":[58],"we":[59,120,191],"test":[60],"separately":[61],"effect":[63],"each":[65],"these":[67,189],"on":[69],"long-term":[71,146],"plague.":[74],"We":[75],"analyse":[76],"dynamics":[78,181],"equilibria":[80],"model":[83],"propagation,":[86],"consistent":[87],"with":[88],"ecology":[90],"Madagascar,":[92],"major":[94],"focus":[95],"where":[96],"since":[101],"1920s":[103],"central":[105],"highlands.":[106],"By":[107],"combining":[108],"deterministic":[109],"stochastic":[111],"analyses":[112],"model,":[115],"including":[117],"sensitivity":[118],"analyses,":[119],"show":[121],"that":[122],"(i)":[123],"endemicity":[124],"favoured":[126],"by":[127],"intermediate":[128],"host":[129,135,157],"population":[130],"sizes,":[131],"(ii)":[132],"large":[134],"populations,":[136],"presence":[138,198],"rats":[141],"sufficient":[143],"explain":[145,195],"plague,":[149],"(iii)":[151],"populations":[158],"alone":[159],"can":[160],"also":[161],"account":[162],"endemicity,":[165],"thanks":[166],"both":[168],"subdivision":[169],"subsequent":[172],"reduction":[173],"size":[176],"subpopulations,":[178],"extinction-recolonization":[180],"disease.":[184],"In":[185],"light":[187],"results,":[190],"suggest":[192],"scenarios":[193],"localized":[197],"Madagascar.":[202]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":7},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":2}],"updated_date":"2026-07-27T08:26:11.824852","created_date":"2025-10-10T00:00:00"}
