{"id":"https://openalex.org/W1979034309","doi":"https://doi.org/10.1371/journal.pcbi.1002916","title":"Spartan: A Comprehensive Tool for Understanding Uncertainty in Simulations of Biological Systems","display_name":"Spartan: A Comprehensive Tool for Understanding Uncertainty in Simulations of Biological Systems","publication_year":2013,"publication_date":"2013-02-28","ids":{"openalex":"https://openalex.org/W1979034309","doi":"https://doi.org/10.1371/journal.pcbi.1002916","mag":"1979034309","pmid":"https://pubmed.ncbi.nlm.nih.gov/23468606"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1002916","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1002916","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1002916&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1002916&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024360871","display_name":"Kieran Alden","orcid":"https://orcid.org/0000-0003-4411-1776"},"institutions":[{"id":"https://openalex.org/I79619799","display_name":"University of Birmingham","ror":"https://ror.org/03angcq70","country_code":"GB","type":"education","lineage":["https://openalex.org/I79619799"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Kieran Alden","raw_affiliation_strings":["Centre for Systems Biology, School of Biosciences, University of Birmingham, Birmingham, United Kingdom. k.j.alden@bham.ac.uk","Centre for Systems Biology, School of Biosciences, University of Birmingham, Birmingham, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Systems Biology, School of Biosciences, University of Birmingham, Birmingham, United Kingdom. k.j.alden@bham.ac.uk","institution_ids":["https://openalex.org/I79619799"]},{"raw_affiliation_string":"Centre for Systems Biology, School of Biosciences, University of Birmingham, Birmingham, United Kingdom","institution_ids":["https://openalex.org/I79619799"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071891762","display_name":"Mark Read","orcid":"https://orcid.org/0000-0002-1481-4780"},"institutions":[{"id":"https://openalex.org/I52099693","display_name":"University of York","ror":"https://ror.org/04m01e293","country_code":"GB","type":"education","lineage":["https://openalex.org/I52099693"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mark Read","raw_affiliation_strings":["Department of Electronics, University of York, York, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronics, University of York, York, United Kingdom","institution_ids":["https://openalex.org/I52099693"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080582720","display_name":"Jon Timmis","orcid":"https://orcid.org/0000-0003-1055-0471"},"institutions":[{"id":"https://openalex.org/I52099693","display_name":"University of York","ror":"https://ror.org/04m01e293","country_code":"GB","type":"education","lineage":["https://openalex.org/I52099693"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jon Timmis","raw_affiliation_strings":["Department of Computer Science, University of York, York, United Kingdom","Department of Electronics, University of York, York, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of York, York, United Kingdom","institution_ids":["https://openalex.org/I52099693"]},{"raw_affiliation_string":"Department of Electronics, University of York, York, United Kingdom","institution_ids":["https://openalex.org/I52099693"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105835589","display_name":"Paul S. Andrews","orcid":null},"institutions":[{"id":"https://openalex.org/I52099693","display_name":"University of York","ror":"https://ror.org/04m01e293","country_code":"GB","type":"education","lineage":["https://openalex.org/I52099693"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Paul S. Andrews","raw_affiliation_strings":["Department of Computer Science, University of York, York, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of York, York, United Kingdom","institution_ids":["https://openalex.org/I52099693"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010960233","display_name":"Henrique Veiga\u2010Fernandes","orcid":"https://orcid.org/0000-0001-6216-1836"},"institutions":[{"id":"https://openalex.org/I4392738257","display_name":"Instituto de Medicina Molecular Jo\u00e3o Lobo Antunes","ror":"https://ror.org/019g8w217","country_code":null,"type":"facility","lineage":["https://openalex.org/I141596103","https://openalex.org/I4392738257"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Henrique Veiga-Fernandes","raw_affiliation_strings":["Instituto de Medicina Molecular, Faculdade de Medicina de Lisboa, Lisboa, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de Medicina Molecular, Faculdade de Medicina de Lisboa, Lisboa, Portugal","institution_ids":["https://openalex.org/I4392738257"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048352835","display_name":"Mark Coles","orcid":"https://orcid.org/0000-0001-8079-9358"},"institutions":[{"id":"https://openalex.org/I52099693","display_name":"University of York","ror":"https://ror.org/04m01e293","country_code":"GB","type":"education","lineage":["https://openalex.org/I52099693"]},{"id":"https://openalex.org/I69768126","display_name":"Hull York Medical School","ror":"https://ror.org/0003e4m70","country_code":"GB","type":"education","lineage":["https://openalex.org/I69768126"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mark Coles","raw_affiliation_strings":["Centre for Immunology and Infection, University of York and Hull York Medical School, York, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Immunology and Infection, University of York and Hull York Medical School, York, United Kingdom","institution_ids":["https://openalex.org/I52099693","https://openalex.org/I69768126"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5024360871"],"corresponding_institution_ids":["https://openalex.org/I79619799"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":8.2622,"has_fulltext":true,"cited_by_count":124,"citation_normalized_percentile":{"value":0.97949827,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"9","issue":"2","first_page":"e1002916","last_page":"e1002916"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10928","display_name":"Probabilistic and Robust Engineering Design","score":0.8729000091552734,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T10928","display_name":"Probabilistic and Robust Engineering Design","score":0.8729000091552734,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11829","display_name":"Mathematical Biology Tumor Growth","score":0.8554999828338623,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11369","display_name":"Genetic factors in colorectal cancer","score":0.8515999913215637,"subfield":{"id":"https://openalex.org/subfields/2734","display_name":"Pathology and Forensic Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/spartan","display_name":"Spartan","score":0.8764421343803406},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6953984498977661},{"id":"https://openalex.org/keywords/implementation","display_name":"Implementation","score":0.5258301496505737},{"id":"https://openalex.org/keywords/stochastic-simulation","display_name":"Stochastic simulation","score":0.45594322681427},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.44553330540657043},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.4125477075576782},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.38894349336624146},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.2085472047328949},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.14605915546417236},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.1399366557598114},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13555803894996643},{"id":"https://openalex.org/keywords/field-programmable-gate-array","display_name":"Field-programmable gate array","score":0.13081791996955872},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08765336871147156}],"concepts":[{"id":"https://openalex.org/C10689553","wikidata":"https://www.wikidata.org/wiki/Q405953","display_name":"Spartan","level":3,"score":0.8764421343803406},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6953984498977661},{"id":"https://openalex.org/C26713055","wikidata":"https://www.wikidata.org/wiki/Q245962","display_name":"Implementation","level":2,"score":0.5258301496505737},{"id":"https://openalex.org/C25915931","wikidata":"https://www.wikidata.org/wiki/Q4180825","display_name":"Stochastic simulation","level":2,"score":0.45594322681427},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.44553330540657043},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.4125477075576782},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.38894349336624146},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.2085472047328949},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.14605915546417236},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.1399366557598114},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13555803894996643},{"id":"https://openalex.org/C42935608","wikidata":"https://www.wikidata.org/wiki/Q190411","display_name":"Field-programmable gate array","level":2,"score":0.13081791996955872},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08765336871147156},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C9390403","wikidata":"https://www.wikidata.org/wiki/Q3966","display_name":"Computer hardware","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002465","descriptor_name":"Cell Movement","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002465","descriptor_name":"Cell Movement","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002465","descriptor_name":"Cell Movement","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002465","descriptor_name":"Cell Movement","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008221","descriptor_name":"Lymphoid Tissue","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D008221","descriptor_name":"Lymphoid Tissue","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D008221","descriptor_name":"Lymphoid Tissue","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D008221","descriptor_name":"Lymphoid Tissue","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1002916","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1002916","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1002916&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:23468606","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23468606","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:RePEc:plo:pcbi00:1002916","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002916","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:66f38c7de0104754bbb304d64e8e893e","is_oa":true,"landing_page_url":"https://doaj.org/article/66f38c7de0104754bbb304d64e8e893e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 9, Iss 2, p e1002916 (2013)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2589498","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3585389","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/642079","is_oa":true,"landing_page_url":"https://figshare.com/articles/_Spartan_A_Comprehensive_Tool_for_Understanding_Uncertainty_in_Simulations_of_Biological_Systems__/642079","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1002916","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1002916","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1002916&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1768913244","display_name":null,"funder_award_id":"G0601156","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G1933809232","display_name":null,"funder_award_id":"RGP0006","funder_id":"https://openalex.org/F4320320006","funder_display_name":"Royal Society"},{"id":"https://openalex.org/G313042574","display_name":null,"funder_award_id":"EP/E053505/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G5378717371","display_name":"IDEAS Factory - Resilient Futures","funder_award_id":"EP/I005943/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G5748799696","display_name":"CoSMoS: Complex Systems Modelling and Simulation","funder_award_id":"EP/E053505/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G606666009","display_name":null,"funder_award_id":"EP/I005943/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320320006","display_name":"Royal Society","ror":"https://ror.org/03wnrjx87"},{"id":"https://openalex.org/F4320332869","display_name":"College of Computing","ror":"https://ror.org/01zkghx44"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1979034309.pdf","grobid_xml":"https://content.openalex.org/works/W1979034309.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W608373070","https://openalex.org/W1489810600","https://openalex.org/W1523412089","https://openalex.org/W1535481092","https://openalex.org/W1965335252","https://openalex.org/W1993321999","https://openalex.org/W1994509201","https://openalex.org/W2002526701","https://openalex.org/W2016133956","https://openalex.org/W2023566060","https://openalex.org/W2044639673","https://openalex.org/W2071471925","https://openalex.org/W2079604837","https://openalex.org/W2081098704","https://openalex.org/W2131031942","https://openalex.org/W2132635773","https://openalex.org/W2148655474","https://openalex.org/W2152803686","https://openalex.org/W2154328223","https://openalex.org/W2162742070","https://openalex.org/W2185516849","https://openalex.org/W3011730451","https://openalex.org/W3148930403","https://openalex.org/W4234455479","https://openalex.org/W4251988601"],"related_works":["https://openalex.org/W3110137422","https://openalex.org/W3215016102","https://openalex.org/W2047513257","https://openalex.org/W2182587364","https://openalex.org/W1956109649","https://openalex.org/W2067734317","https://openalex.org/W47352601","https://openalex.org/W2601403494","https://openalex.org/W4386968677","https://openalex.org/W1527989821"],"abstract_inverted_index":{"Integrating":[0],"computer":[1],"simulation":[2,25,47,94,116,129,218],"with":[3],"conventional":[4],"wet-lab":[5],"research":[6],"has":[7],"proven":[8],"to":[9,30,76,99,200],"have":[10,127],"much":[11],"potential":[12],"in":[13,52,55,148,158],"furthering":[14],"the":[15,22,27,36,43,58,100,103,121,138,144,159,173,184,195,229],"understanding":[16],"of":[17,35,46,51,57,71,102,110,137,146,154],"biological":[18,37,85,105,111,133],"systems.":[19],"Success":[20],"requires":[21],"relationship":[23,81],"between":[24],"and":[26,42,82,125,179,190,216],"real-world":[28],"system":[29,38,139],"be":[31,97,198,224],"established:":[32],"substantial":[33],"aspects":[34,136,153],"are":[39,226],"typically":[40],"unknown,":[41],"abstract":[44],"nature":[45],"can":[48,96,197,223],"complicate":[49],"interpretation":[50],"silico":[53],"results":[54,95],"terms":[56],"biology.":[59],"Here":[60],"we":[61],"present":[62],"spartan":[63,90,147,222],"(Simulation":[64],"Parameter":[65],"Analysis":[66],"RToolkit":[67],"ApplicatioN),":[68],"a":[69,168],"package":[70,196],"statistical":[72,177],"techniques":[73,193],"specifically":[74],"designed":[75],"help":[77,91],"researchers":[78],"understand":[79],"this":[80],"provide":[83],"novel":[84],"insight.":[86],"The":[87,192],"tools":[88],"comprising":[89],"identify":[92],"which":[93,221],"attributed":[98],"dynamics":[101],"modelled":[104],"system,":[106],"rather":[107],"than":[108],"artefacts":[109],"uncertainty":[112],"or":[113,115,203],"parametrisation,":[114],"stochasticity.":[117],"Statistical":[118],"analyses":[119],"reveal":[120],"influence":[122],"that":[123],"pathways":[124],"components":[126],"on":[128],"behaviour,":[130],"offering":[131],"valuable":[132],"insight":[134,151],"into":[135,152],"under":[140,167],"study.":[141],"We":[142],"demonstrate":[143],"power":[145],"providing":[149],"critical":[150],"lymphoid":[155],"tissue":[156],"development":[157],"small":[160],"intestine":[161],"through":[162],"simulation.":[163],"Spartan":[164],"is":[165],"released":[166],"GPLv2":[169],"license,":[170],"implemented":[171],"within":[172,194],"open":[174],"source":[175],"R":[176,186],"environment,":[178],"freely":[180],"available":[181,227],"from":[182,228],"both":[183],"Comprehensive":[185],"Archive":[187],"Network":[188],"(CRAN)":[189],"http://www.cs.york.ac.uk/spartan.":[191],"applied":[199,225],"traditional":[201],"ordinary":[202],"partial":[204],"differential":[205],"equation":[206],"simulations":[207],"as":[208,210],"well":[209],"agent-based":[211],"implementations.":[212],"Manuals,":[213],"comprehensive":[214],"tutorials,":[215],"example":[217],"data":[219],"upon":[220],"website.":[230]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":30},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":12},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":4}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
