{"id":"https://openalex.org/W2040298842","doi":"https://doi.org/10.1371/journal.pcbi.1002854","title":"Getting More Out of Biomedical Documents with GATE's Full Lifecycle Open Source Text Analytics","display_name":"Getting More Out of Biomedical Documents with GATE's Full Lifecycle Open Source Text Analytics","publication_year":2013,"publication_date":"2013-02-07","ids":{"openalex":"https://openalex.org/W2040298842","doi":"https://doi.org/10.1371/journal.pcbi.1002854","mag":"2040298842","pmid":"https://pubmed.ncbi.nlm.nih.gov/23408875"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1002854","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1002854","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1002854&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1002854&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000140583","display_name":"Hamish Cunningham","orcid":"https://orcid.org/0000-0001-5901-5483"},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Hamish Cunningham","raw_affiliation_strings":["Department of Computer Science, University of Sheffield, Sheffield, UK. hamish@gate.ac.uk","Department of Computer Science, University of Sheffield, Sheffield, United Kingdom,"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Sheffield, Sheffield, UK. hamish@gate.ac.uk","institution_ids":["https://openalex.org/I91136226"]},{"raw_affiliation_string":"Department of Computer Science, University of Sheffield, Sheffield, United Kingdom,","institution_ids":["https://openalex.org/I91136226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053159679","display_name":"Valentin Tablan","orcid":"https://orcid.org/0000-0001-6370-0141"},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Valentin Tablan","raw_affiliation_strings":["Department of Computer Science, University of Sheffield, Sheffield, United Kingdom,"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Sheffield, Sheffield, United Kingdom,","institution_ids":["https://openalex.org/I91136226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083249843","display_name":"Angus Roberts","orcid":"https://orcid.org/0000-0002-4570-9801"},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Angus Roberts","raw_affiliation_strings":["Department of Computer Science, University of Sheffield, Sheffield, United Kingdom,"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Sheffield, Sheffield, United Kingdom,","institution_ids":["https://openalex.org/I91136226"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021952588","display_name":"Kalina Bontcheva","orcid":"https://orcid.org/0000-0001-6152-9600"},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Kalina Bontcheva","raw_affiliation_strings":["Department of Computer Science, University of Sheffield, Sheffield, United Kingdom,"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Sheffield, Sheffield, United Kingdom,","institution_ids":["https://openalex.org/I91136226"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5000140583"],"corresponding_institution_ids":["https://openalex.org/I91136226"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":14.3736,"has_fulltext":true,"cited_by_count":362,"citation_normalized_percentile":{"value":0.99379027,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"9","issue":"2","first_page":"e1002854","last_page":"e1002854"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.98089998960495,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9782000184059143,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5825450420379639},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.539921224117279},{"id":"https://openalex.org/keywords/software-deployment","display_name":"Software deployment","score":0.4900902509689331},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.45091161131858826},{"id":"https://openalex.org/keywords/analytics","display_name":"Analytics","score":0.4500201940536499},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4404467046260834},{"id":"https://openalex.org/keywords/download","display_name":"Download","score":0.4301323890686035},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.4119480848312378},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4085553288459778},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.2969251275062561},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.26601916551589966},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.19795438647270203}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5825450420379639},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.539921224117279},{"id":"https://openalex.org/C105339364","wikidata":"https://www.wikidata.org/wiki/Q2297740","display_name":"Software deployment","level":2,"score":0.4900902509689331},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.45091161131858826},{"id":"https://openalex.org/C79158427","wikidata":"https://www.wikidata.org/wiki/Q485396","display_name":"Analytics","level":2,"score":0.4500201940536499},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4404467046260834},{"id":"https://openalex.org/C2780154274","wikidata":"https://www.wikidata.org/wiki/Q7126717","display_name":"Download","level":2,"score":0.4301323890686035},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.4119480848312378},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4085553288459778},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.2969251275062561},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.26601916551589966},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.19795438647270203},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1002854","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1002854","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1002854&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:23408875","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23408875","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:eprints.whiterose.ac.uk:97901","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400854","display_name":"White Rose Research Online (University of Leeds, The University of Sheffield, University of York)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2800616092","host_organization_name":"White Rose University Consortium","host_organization_lineage":["https://openalex.org/I2800616092"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:c77e33ff669545708d8e3e0cd966cd45","is_oa":true,"landing_page_url":"https://doaj.org/article/c77e33ff669545708d8e3e0cd966cd45","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 9, Iss 2, p e1002854 (2013)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2571004","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3567135","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/156126","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Getting_More_Out_of_Biomedical_Documents_with_GATE_s_Full_Lifecycle_Open_Source_Text_Analytics__/156126","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1002854","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1002854","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1002854&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1745319749","display_name":null,"funder_award_id":"EP/I004327/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320334609","display_name":"Arts and Humanities Research Council","ror":"https://ror.org/0505m1554"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2040298842.pdf","grobid_xml":"https://content.openalex.org/works/W2040298842.grobid-xml"},"referenced_works_count":73,"referenced_works":["https://openalex.org/W23149702","https://openalex.org/W61471820","https://openalex.org/W197277415","https://openalex.org/W199391036","https://openalex.org/W1516633649","https://openalex.org/W1532325895","https://openalex.org/W1541135842","https://openalex.org/W1546195864","https://openalex.org/W1570271129","https://openalex.org/W1598064945","https://openalex.org/W1608462205","https://openalex.org/W1649076462","https://openalex.org/W1722846244","https://openalex.org/W1951412036","https://openalex.org/W1968829212","https://openalex.org/W1969709265","https://openalex.org/W1971360647","https://openalex.org/W1991154713","https://openalex.org/W1993755899","https://openalex.org/W2007846880","https://openalex.org/W2007848212","https://openalex.org/W2014849717","https://openalex.org/W2015191210","https://openalex.org/W2026319679","https://openalex.org/W2034137005","https://openalex.org/W2051689038","https://openalex.org/W2054730875","https://openalex.org/W2055459874","https://openalex.org/W2062199121","https://openalex.org/W2066669827","https://openalex.org/W2066874799","https://openalex.org/W2093686874","https://openalex.org/W2096797897","https://openalex.org/W2098461313","https://openalex.org/W2118658201","https://openalex.org/W2122402213","https://openalex.org/W2123504579","https://openalex.org/W2124714582","https://openalex.org/W2131285447","https://openalex.org/W2133149548","https://openalex.org/W2134783591","https://openalex.org/W2147072563","https://openalex.org/W2148212498","https://openalex.org/W2151296343","https://openalex.org/W2151554593","https://openalex.org/W2154531419","https://openalex.org/W2155410209","https://openalex.org/W2155449815","https://openalex.org/W2158789585","https://openalex.org/W2161890636","https://openalex.org/W2164947858","https://openalex.org/W2168384920","https://openalex.org/W2169918010","https://openalex.org/W2170934897","https://openalex.org/W2179973836","https://openalex.org/W2254149090","https://openalex.org/W2303394219","https://openalex.org/W2426119782","https://openalex.org/W2598908450","https://openalex.org/W2914587486","https://openalex.org/W2951273630","https://openalex.org/W2952844544","https://openalex.org/W2963023609","https://openalex.org/W3022734214","https://openalex.org/W3037562241","https://openalex.org/W3088641487","https://openalex.org/W4233119722","https://openalex.org/W4242927059","https://openalex.org/W4285719527","https://openalex.org/W6629402487","https://openalex.org/W6682868268","https://openalex.org/W6780625241","https://openalex.org/W7062434573"],"related_works":["https://openalex.org/W2183842793","https://openalex.org/W2485259751","https://openalex.org/W96612179","https://openalex.org/W2770234245","https://openalex.org/W4287615848","https://openalex.org/W4291722174","https://openalex.org/W2566006169","https://openalex.org/W2226303319","https://openalex.org/W2987774938","https://openalex.org/W4225768143"],"abstract_inverted_index":{"This":[0],"software":[1,202],"article":[2],"describes":[3],"the":[4,19,57,89,96,111,115,119,123,132,155,225,237,254],"GATE":[5,15,116,172,212,268],"family":[6,117],"of":[7,18,24,31,33,52,73,92,122,134,148,224,227,241,253],"open":[8,275],"source":[9,276],"text":[10,135,192,228,261],"analysis":[11,84,229],"tools":[12,158],"and":[13,35,42,60,76,143,152,159,169,180,206,239,265,278,292,295],"processes.":[14],"is":[16,145,175,269,286],"one":[17],"most":[20],"widely":[21],"used":[22],"systems":[23,54],"its":[25,184],"type":[26],"with":[27,154],"yearly":[28],"download":[29],"rates":[30],"tens":[32],"thousands":[34],"many":[36,248],"active":[37,290],"users":[38],"in":[39,56,61,64,95,105,113,126,260],"both":[40],"academic":[41],"industrial":[43],"contexts.":[44],"In":[45],"this":[46,163],"paper":[47],"we":[48],"report":[49],"three":[50],"examples":[51],"GATE-based":[53],"operating":[55,283],"life":[58],"sciences":[59],"medicine.":[62],"First,":[63],"genome-wide":[65],"association":[66],"studies":[67],"which":[68,85,114],"have":[69,244],"contributed":[70],"to":[71,194,218],"discovery":[72],"a":[74,150,187,196,215,220,233,298],"head":[75],"neck":[77],"cancer":[78],"mutation":[79],"association.":[80],"Second,":[81],"medical":[82],"records":[83],"has":[86,181,214],"significantly":[87],"increased":[88],"statistical":[90],"power":[91],"treatment/outcome":[93],"models":[94],"UK's":[97],"largest":[98],"psychiatric":[99],"patient":[100],"cohort.":[101],"Third,":[102],"richer":[103],"constructs":[104],"drug-related":[106],"searching.":[107],"We":[108,129],"also":[109,296],"explore":[110],"ways":[112],"supports":[118],"various":[120],"stages":[121],"lifecycle":[124,226],"present":[125],"our":[127],"examples.":[128],"conclude":[130],"that":[131,153,243],"deployment":[133],"mining":[136],"for":[137,191,236,263],"document":[138],"abstraction":[139],"or":[140],"rich":[141],"search":[142],"navigation":[144],"best":[146],"thought":[147],"as":[149,186],"process,":[151],"right":[156],"computational":[157],"data":[160],"collection":[161],"strategies":[162],"process":[164],"can":[165],"be":[166],"made":[167,246],"defined":[168],"repeatable.":[170],"The":[171],"research":[173,207],"programme":[174],"now":[176,213],"20":[177],"years":[178],"old":[179],"grown":[182],"from":[183,209,288],"roots":[185],"specialist":[188],"development":[189],"tool":[190],"processing":[193,262],"become":[195],"rather":[197],"comprehensive":[198],"ecosystem,":[199],"bringing":[200],"together":[201],"developers,":[203],"language":[204],"engineers":[205],"staff":[208],"diverse":[210],"fields.":[211],"strong":[216],"claim":[217],"cover":[219],"uniquely":[221],"wide":[222],"range":[223],"systems.":[230,284],"It":[231],"forms":[232],"focal":[234],"point":[235],"integration":[238],"reuse":[240],"advances":[242],"been":[245],"by":[247],"people":[249],"(the":[250],"majority":[251],"outside":[252],"authors'":[255],"own":[256],"group)":[257],"who":[258],"work":[259],"biomedicine":[264],"other":[266],"areas.":[267],"available":[270,287],"online":[271],"<1>":[272],"under":[273],"GNU":[274],"licences":[277],"runs":[279],"on":[280,297],"all":[281],"major":[282],"Support":[285],"an":[289],"user":[291],"developer":[293],"community":[294],"commercial":[299],"basis.":[300]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":21},{"year":2023,"cited_by_count":18},{"year":2022,"cited_by_count":20},{"year":2021,"cited_by_count":39},{"year":2020,"cited_by_count":44},{"year":2019,"cited_by_count":39},{"year":2018,"cited_by_count":38},{"year":2017,"cited_by_count":33},{"year":2016,"cited_by_count":21},{"year":2015,"cited_by_count":28},{"year":2014,"cited_by_count":29},{"year":2013,"cited_by_count":18}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
