{"id":"https://openalex.org/W2057119643","doi":"https://doi.org/10.1371/journal.pcbi.1002533","title":"Quality of Computationally Inferred Gene Ontology Annotations","display_name":"Quality of Computationally Inferred Gene Ontology Annotations","publication_year":2012,"publication_date":"2012-05-31","ids":{"openalex":"https://openalex.org/W2057119643","doi":"https://doi.org/10.1371/journal.pcbi.1002533","mag":"2057119643","pmid":"https://pubmed.ncbi.nlm.nih.gov/22693439"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1002533","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1002533","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1002533&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1002533&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062768683","display_name":"Nives \u0160kunca","orcid":null},"institutions":[{"id":"https://openalex.org/I4210123216","display_name":"Rudjer Boskovic Institute","ror":"https://ror.org/02mw21745","country_code":"HR","type":"facility","lineage":["https://openalex.org/I4210123216"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH","HR"],"is_corresponding":false,"raw_author_name":"Nives \u0160kunca","raw_affiliation_strings":["Ru\u0111er Bo\u0161kovi\u0107 Institute, Division of Electronics, Zagreb, Croatia","ETH Zurich, Computer Science, Zurich, Switzerland"],"affiliations":[{"raw_affiliation_string":"Ru\u0111er Bo\u0161kovi\u0107 Institute, Division of Electronics, Zagreb, Croatia","institution_ids":["https://openalex.org/I4210123216"]},{"raw_affiliation_string":"ETH Zurich, Computer Science, Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084558956","display_name":"Adrian Altenhoff","orcid":"https://orcid.org/0000-0001-7492-1273"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Adrian Altenhoff","raw_affiliation_strings":["ETH Zurich, Computer Science, Zurich, Switzerland","Swiss Institute of Bioinformatics, Zurich, Switzerland"],"affiliations":[{"raw_affiliation_string":"ETH Zurich, Computer Science, Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Zurich, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050068380","display_name":"Christophe Dessimoz","orcid":"https://orcid.org/0000-0002-2170-853X"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH","GB"],"is_corresponding":true,"raw_author_name":"Christophe Dessimoz","raw_affiliation_strings":["EMBL-European Bioinformatics Institute, Hinxton, Cambridge, United Kingdom","ETH Zurich, Computer Science, Zurich, Switzerland","Swiss Institute of Bioinformatics, Zurich, Switzerland"],"affiliations":[{"raw_affiliation_string":"EMBL-European Bioinformatics Institute, Hinxton, Cambridge, United Kingdom","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"ETH Zurich, Computer Science, Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Zurich, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5050068380"],"corresponding_institution_ids":["https://openalex.org/I12708293","https://openalex.org/I1303153112","https://openalex.org/I35440088"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":6.0294,"has_fulltext":true,"cited_by_count":114,"citation_normalized_percentile":{"value":0.97273385,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"8","issue":"5","first_page":"e1002533","last_page":"e1002533"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.8117514848709106},{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.8089147806167603},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7685669660568237},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.7664386034011841},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7058578729629517},{"id":"https://openalex.org/keywords/reliability","display_name":"Reliability (semiconductor)","score":0.5612530708312988},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5468494296073914},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.5368531346321106},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5261033177375793},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.43350785970687866},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4225507080554962},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2874186635017395},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21350011229515076},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20453470945358276},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09731021523475647}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.8117514848709106},{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.8089147806167603},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7685669660568237},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.7664386034011841},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7058578729629517},{"id":"https://openalex.org/C43214815","wikidata":"https://www.wikidata.org/wiki/Q7310987","display_name":"Reliability (semiconductor)","level":3,"score":0.5612530708312988},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5468494296073914},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.5368531346321106},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5261033177375793},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.43350785970687866},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4225507080554962},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2874186635017395},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21350011229515076},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20453470945358276},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09731021523475647},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C163258240","wikidata":"https://www.wikidata.org/wiki/Q25342","display_name":"Power (physics)","level":2,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1002533","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1002533","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1002533&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:22693439","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22693439","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:figshare.com:article/124409","is_oa":true,"landing_page_url":null,"pdf_url":"https://figshare.com/articles/dataset/Quality_of_Computationally_Inferred_Gene_Ontology_Annotations/124409","source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:RePEc:plo:pcbi00:1002533","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002533","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:f2500039016d409399d899b04c1704c5","is_oa":true,"landing_page_url":"https://doaj.org/article/f2500039016d409399d899b04c1704c5","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 8, Iss 5, p e1002533 (2012)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2378355","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3364937","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1002533","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1002533","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1002533&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G125759156","display_name":"The Million Protein, Thousand Species Tree(s) of Life","funder_award_id":"136461","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"},{"id":"https://openalex.org/F4320322674","display_name":"Hrvatska Zaklada za Znanost","ror":"https://ror.org/03n51vw80"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2057119643.pdf","grobid_xml":"https://content.openalex.org/works/W2057119643.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W1236321187","https://openalex.org/W1492851286","https://openalex.org/W1587026990","https://openalex.org/W1969353942","https://openalex.org/W1985904552","https://openalex.org/W2011025549","https://openalex.org/W2035900631","https://openalex.org/W2056119436","https://openalex.org/W2057387739","https://openalex.org/W2061017626","https://openalex.org/W2074706385","https://openalex.org/W2085032889","https://openalex.org/W2088862890","https://openalex.org/W2091978351","https://openalex.org/W2096939566","https://openalex.org/W2107038434","https://openalex.org/W2108491719","https://openalex.org/W2111973517","https://openalex.org/W2112479620","https://openalex.org/W2116423958","https://openalex.org/W2122613768","https://openalex.org/W2132023322","https://openalex.org/W2140628770","https://openalex.org/W2142643924","https://openalex.org/W2143738293","https://openalex.org/W2148130205","https://openalex.org/W2150392051","https://openalex.org/W2161358836","https://openalex.org/W2166361106","https://openalex.org/W2171815113","https://openalex.org/W2276605232","https://openalex.org/W2772934464","https://openalex.org/W4211208250","https://openalex.org/W4230096730"],"related_works":["https://openalex.org/W2102027645","https://openalex.org/W2107785922","https://openalex.org/W2035528219","https://openalex.org/W2402478170","https://openalex.org/W2901823680","https://openalex.org/W2946410450","https://openalex.org/W2301631766","https://openalex.org/W2120423098","https://openalex.org/W2101595316","https://openalex.org/W4210537230"],"abstract_inverted_index":{"Gene":[0,70],"Ontology":[1,71],"(GO)":[2],"has":[3],"established":[4],"itself":[5],"as":[6,41],"the":[7,31,68,76,128,132],"undisputed":[8],"standard":[9],"for":[10],"protein":[11],"function":[12],"annotation.":[13],"Most":[14],"annotations":[15,80,95,111,136,149],"are":[16,26,46,150],"inferred":[17,112,151],"electronically,":[18],"i.e.":[19],"without":[20,152],"individual":[21],"curator":[22],"supervision,":[23],"but":[24,102],"they":[25,116],"widely":[27],"considered":[28],"unreliable.":[29],"At":[30],"same":[32],"time,":[33],"we":[34,50,74,89],"crucially":[35],"depend":[36],"on":[37],"those":[38],"automated":[39],"annotations,":[40],"most":[42],"newly":[43],"sequenced":[44],"genomes":[45],"non-model":[47],"organisms.":[48],"Here,":[49],"introduce":[51],"a":[52],"methodology":[53],"to":[54,130],"systematically":[55],"and":[56,86],"quantitatively":[57],"evaluate":[58],"electronic":[59,79,94,135],"annotations.":[60],"By":[61],"exploiting":[62],"changes":[63],"in":[64,81,99],"successive":[65],"releases":[66],"of":[67,78,83,110,134,147],"UniProt":[69],"Annotation":[72],"database,":[73],"assessed":[75],"quality":[77],"terms":[82],"specificity,":[84],"reliability,":[85],"coverage.":[87],"Overall,":[88],"not":[90],"only":[91],"found":[92],"that":[93,104,109,137,145],"have":[96],"significantly":[97],"improved":[98],"recent":[100],"years,":[101],"also":[103],"their":[105],"reliability":[106],"now":[107],"rivals":[108],"by":[113],"curators":[114],"when":[115],"use":[117],"evidence":[118],"other":[119],"than":[120],"experiments":[121],"from":[122],"primary":[123],"literature.":[124],"This":[125],"work":[126],"provides":[127],"means":[129],"identify":[131],"subset":[133],"can":[138],"be":[139],"relied":[140],"upon-an":[141],"important":[142],"outcome":[143],"given":[144],">98%":[146],"all":[148],"direct":[153],"curation.":[154]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":11},{"year":2016,"cited_by_count":17},{"year":2015,"cited_by_count":18},{"year":2014,"cited_by_count":12},{"year":2013,"cited_by_count":12},{"year":2012,"cited_by_count":3}],"updated_date":"2026-03-07T16:01:11.037858","created_date":"2025-10-10T00:00:00"}