{"id":"https://openalex.org/W1981778940","doi":"https://doi.org/10.1371/journal.pcbi.1002515","title":"A Two-Dimensional Model of the Colonic Crypt Accounting for the Role of the Basement Membrane and Pericryptal Fibroblast Sheath","display_name":"A Two-Dimensional Model of the Colonic Crypt Accounting for the Role of the Basement Membrane and Pericryptal Fibroblast Sheath","publication_year":2012,"publication_date":"2012-05-24","ids":{"openalex":"https://openalex.org/W1981778940","doi":"https://doi.org/10.1371/journal.pcbi.1002515","mag":"1981778940","pmid":"https://pubmed.ncbi.nlm.nih.gov/22654652"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1002515","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1002515","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1002515&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1002515&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018785790","display_name":"Sara-Jane Dunn","orcid":"https://orcid.org/0000-0003-3062-7923"},"institutions":[{"id":"https://openalex.org/I4210164937","display_name":"Microsoft Research (United Kingdom)","ror":"https://ror.org/05k87vq12","country_code":"GB","type":"company","lineage":["https://openalex.org/I1290206253","https://openalex.org/I4210164937"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210146410","display_name":"Science Oxford","ror":"https://ror.org/04j8yhy50","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I4210146410"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Sara-Jane Dunn","raw_affiliation_strings":["Department of Computer Science, University of Oxford, Oxford, United Kingdom. sara-jane.dunn@microsoft.com","Department of Computer Science, University of Oxford, Oxford, United Kingdom","Microsoft Research Ltd., Cambridge, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Oxford, Oxford, United Kingdom. sara-jane.dunn@microsoft.com","institution_ids":["https://openalex.org/I4210146410"]},{"raw_affiliation_string":"Department of Computer Science, University of Oxford, Oxford, United Kingdom","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Microsoft Research Ltd., Cambridge, United Kingdom","institution_ids":["https://openalex.org/I4210164937"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053386502","display_name":"Paul L. Appleton","orcid":"https://orcid.org/0000-0001-6732-1675"},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Paul L. Appleton","raw_affiliation_strings":["College of Life Sciences, University of Dundee, Dundee, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, University of Dundee, Dundee, United Kingdom","institution_ids":["https://openalex.org/I177639307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112388534","display_name":"Scott A. Nelson","orcid":null},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Scott A. Nelson","raw_affiliation_strings":["College of Life Sciences, University of Dundee, Dundee, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, University of Dundee, Dundee, United Kingdom","institution_ids":["https://openalex.org/I177639307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003734971","display_name":"Inke N\u00e4thke","orcid":"https://orcid.org/0000-0003-2420-4385"},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Inke S. N\u00e4thke","raw_affiliation_strings":["College of Life Sciences, University of Dundee, Dundee, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, University of Dundee, Dundee, United Kingdom","institution_ids":["https://openalex.org/I177639307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003271159","display_name":"David J. Gavaghan","orcid":"https://orcid.org/0000-0001-8311-3200"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210136001","display_name":"Oxford Centre for Mission Studies","ror":"https://ror.org/040059s22","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I4210136001"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"David J. Gavaghan","raw_affiliation_strings":["Department of Computer Science, University of Oxford, Oxford, United Kingdom","Oxford Centre for Integrative Systems Biology, Department of Biochemistry, Oxford, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Oxford, Oxford, United Kingdom","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Oxford Centre for Integrative Systems Biology, Department of Biochemistry, Oxford, United Kingdom","institution_ids":["https://openalex.org/I4210136001"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015466996","display_name":"James M. Osborne","orcid":"https://orcid.org/0000-0002-5622-0104"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210136001","display_name":"Oxford Centre for Mission Studies","ror":"https://ror.org/040059s22","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I4210136001"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"James M. Osborne","raw_affiliation_strings":["Department of Computer Science, University of Oxford, Oxford, United Kingdom","Oxford Centre for Integrative Systems Biology, Department of Biochemistry, Oxford, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Oxford, Oxford, United Kingdom","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Oxford Centre for Integrative Systems Biology, Department of Biochemistry, Oxford, United Kingdom","institution_ids":["https://openalex.org/I4210136001"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5018785790"],"corresponding_institution_ids":["https://openalex.org/I40120149","https://openalex.org/I4210146410","https://openalex.org/I4210164937"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":2.5841,"has_fulltext":true,"cited_by_count":53,"citation_normalized_percentile":{"value":0.90032264,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"8","issue":"5","first_page":"e1002515","last_page":"e1002515"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10336","display_name":"Cancer Cells and Metastasis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10336","display_name":"Cancer Cells and Metastasis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10379","display_name":"Cellular Mechanics and Interactions","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12793","display_name":"Caveolin-1 and cellular processes","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/crypt","display_name":"Crypt","score":0.9633739590644836},{"id":"https://openalex.org/keywords/basement-membrane","display_name":"Basement membrane","score":0.7244223356246948},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6124160885810852},{"id":"https://openalex.org/keywords/epithelium","display_name":"Epithelium","score":0.5956923961639404},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.5481328368186951},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5307338833808899},{"id":"https://openalex.org/keywords/cell-division","display_name":"Cell division","score":0.5077884793281555},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.44248732924461365},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3222072720527649},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.3209187984466553},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.2948992848396301},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.10958811640739441},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09608268737792969},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.09198769927024841}],"concepts":[{"id":"https://openalex.org/C66090201","wikidata":"https://www.wikidata.org/wiki/Q15995009","display_name":"Crypt","level":2,"score":0.9633739590644836},{"id":"https://openalex.org/C2776193487","wikidata":"https://www.wikidata.org/wiki/Q32846","display_name":"Basement membrane","level":2,"score":0.7244223356246948},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6124160885810852},{"id":"https://openalex.org/C529295009","wikidata":"https://www.wikidata.org/wiki/Q41301","display_name":"Epithelium","level":2,"score":0.5956923961639404},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.5481328368186951},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5307338833808899},{"id":"https://openalex.org/C85813293","wikidata":"https://www.wikidata.org/wiki/Q188909","display_name":"Cell division","level":3,"score":0.5077884793281555},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.44248732924461365},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3222072720527649},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.3209187984466553},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.2948992848396301},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.10958811640739441},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09608268737792969},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.09198769927024841},{"id":"https://openalex.org/C134018914","wikidata":"https://www.wikidata.org/wiki/Q162606","display_name":"Endocrinology","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001485","descriptor_name":"Basement Membrane","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D001485","descriptor_name":"Basement Membrane","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D001485","descriptor_name":"Basement Membrane","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D001485","descriptor_name":"Basement Membrane","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D001485","descriptor_name":"Basement Membrane","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D001485","descriptor_name":"Basement Membrane","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001485","descriptor_name":"Basement Membrane","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001485","descriptor_name":"Basement Membrane","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001485","descriptor_name":"Basement Membrane","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001485","descriptor_name":"Basement Membrane","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D002450","descriptor_name":"Cell Communication","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D002450","descriptor_name":"Cell Communication","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D002450","descriptor_name":"Cell Communication","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D002450","descriptor_name":"Cell Communication","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D002450","descriptor_name":"Cell Communication","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D003106","descriptor_name":"Colon","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D003106","descriptor_name":"Colon","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D003106","descriptor_name":"Colon","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D003106","descriptor_name":"Colon","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D003106","descriptor_name":"Colon","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D003106","descriptor_name":"Colon","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D003106","descriptor_name":"Colon","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D003106","descriptor_name":"Colon","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D003106","descriptor_name":"Colon","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D003106","descriptor_name":"Colon","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005347","descriptor_name":"Fibroblasts","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D005347","descriptor_name":"Fibroblasts","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D005347","descriptor_name":"Fibroblasts","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D005347","descriptor_name":"Fibroblasts","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D005347","descriptor_name":"Fibroblasts","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D005347","descriptor_name":"Fibroblasts","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D005347","descriptor_name":"Fibroblasts","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D005347","descriptor_name":"Fibroblasts","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D005347","descriptor_name":"Fibroblasts","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D005347","descriptor_name":"Fibroblasts","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1371/journal.pcbi.1002515","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1002515","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1002515&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:22654652","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22654652","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:discovery.dundee.ac.uk:openaire_cris_publications/616979a2-1235-44aa-812b-f1164516a50d","is_oa":false,"landing_page_url":"https://discovery.dundee.ac.uk/en/publications/616979a2-1235-44aa-812b-f1164516a50d","pdf_url":null,"source":{"id":"https://openalex.org/S4306400523","display_name":"Discovery Research Portal (University of Dundee)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177639307","host_organization_name":"University of Dundee","host_organization_lineage":["https://openalex.org/I177639307"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Dunn, S-J, Appleton, P L, Nelson, S A, Nathke, I S, Gavaghan, D J & Osborne, J M 2012, 'A two-dimensional model of the colonic crypt accounting for the role of the basement membrane and pericryptal fibroblast sheath', PLoS Computational Biology, vol. 8, no. 5, e1002515. https://doi.org/10.1371/journal.pcbi.1002515","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:jupiter.its.unimelb.edu.au:11343/260113","is_oa":true,"landing_page_url":"http://hdl.handle.net/11343/260113","pdf_url":"http://hdl.handle.net/11343/260113","source":{"id":"https://openalex.org/S4377196259","display_name":"Minerva Access (University of Melbourne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165779595","host_organization_name":"The University of Melbourne","host_organization_lineage":["https://openalex.org/I165779595"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:14aa66f6cfb948e096a6538c514f2793","is_oa":true,"landing_page_url":"https://doaj.org/article/14aa66f6cfb948e096a6538c514f2793","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 8, Iss 5, p e1002515 (2012)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/124846","is_oa":true,"landing_page_url":"https://figshare.com/articles/A_Two_Dimensional_Model_of_the_Colonic_Crypt_Accounting_for_the_Role_of_the_Basement_Membrane_and_Pericryptal_Fibroblast_Sheath/124846","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:ora.ox.ac.uk:uuid:2f705a2c-5573-426c-9ac1-78d082aa8c2c","is_oa":true,"landing_page_url":"https://ora.ox.ac.uk/objects/uuid:2f705a2c-5573-426c-9ac1-78d082aa8c2c","pdf_url":null,"source":{"id":"https://openalex.org/S4306402636","display_name":"Oxford University Research Archive (ORA) (University of Oxford)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I40120149","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/I40120149"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Department of Computer Science","raw_type":"Journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3359972","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3359972","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1002515","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1002515","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1002515&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1933331760","display_name":null,"funder_award_id":"BB/D020190/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5844702837","display_name":"Doctoral Training Centre - Oxford University","funder_award_id":"EP/E501605/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G6428962470","display_name":null,"funder_award_id":"EP/I017909/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320319985","display_name":"Cancer Research UK","ror":"https://ror.org/054225q67"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1981778940.pdf","grobid_xml":"https://content.openalex.org/works/W1981778940.grobid-xml"},"referenced_works_count":62,"referenced_works":["https://openalex.org/W29271843","https://openalex.org/W280536263","https://openalex.org/W1544918322","https://openalex.org/W1597944220","https://openalex.org/W1965157206","https://openalex.org/W1967802833","https://openalex.org/W1968407767","https://openalex.org/W1974995378","https://openalex.org/W1975523864","https://openalex.org/W1981924236","https://openalex.org/W1982603620","https://openalex.org/W1983888255","https://openalex.org/W1996198135","https://openalex.org/W1999763927","https://openalex.org/W2003299661","https://openalex.org/W2005132036","https://openalex.org/W2005979670","https://openalex.org/W2006006356","https://openalex.org/W2009119070","https://openalex.org/W2014209146","https://openalex.org/W2023649138","https://openalex.org/W2024857915","https://openalex.org/W2027554764","https://openalex.org/W2035807711","https://openalex.org/W2040370019","https://openalex.org/W2043347798","https://openalex.org/W2045823500","https://openalex.org/W2047677763","https://openalex.org/W2048358780","https://openalex.org/W2058324879","https://openalex.org/W2059359223","https://openalex.org/W2070776588","https://openalex.org/W2071260016","https://openalex.org/W2078591745","https://openalex.org/W2084677573","https://openalex.org/W2085763173","https://openalex.org/W2086320165","https://openalex.org/W2090562908","https://openalex.org/W2097090938","https://openalex.org/W2099636196","https://openalex.org/W2109450749","https://openalex.org/W2111663010","https://openalex.org/W2119410416","https://openalex.org/W2120629640","https://openalex.org/W2136373114","https://openalex.org/W2137022580","https://openalex.org/W2139462904","https://openalex.org/W2142676005","https://openalex.org/W2144307710","https://openalex.org/W2146435848","https://openalex.org/W2149022033","https://openalex.org/W2155507705","https://openalex.org/W2164712741","https://openalex.org/W2166594994","https://openalex.org/W2171913567","https://openalex.org/W2171996338","https://openalex.org/W2330746655","https://openalex.org/W2965858921","https://openalex.org/W4247382314","https://openalex.org/W4300918859","https://openalex.org/W6601199441","https://openalex.org/W6672158889"],"related_works":["https://openalex.org/W2090131237","https://openalex.org/W1985757027","https://openalex.org/W4245677458","https://openalex.org/W2011405657","https://openalex.org/W2465986824","https://openalex.org/W1994795620","https://openalex.org/W1982417344","https://openalex.org/W2410869232","https://openalex.org/W1977428493","https://openalex.org/W4229882120"],"abstract_inverted_index":{"The":[0,37,152,227],"role":[1,160],"of":[2,14,39,48,64,72,86,158,161,171,175,192,207,267,270,280],"the":[3,10,26,33,46,49,54,62,65,76,84,91,106,114,140,159,162,172,176,190,193,205,208,214,221,225,243,263,268,271],"basement":[4],"membrane":[5,41],"is":[6,42,128,135,187,195],"vital":[7],"in":[8,45,113,256,291,294],"maintaining":[9],"integrity":[11],"and":[12,24,32,67,94,144,165,189,199,246],"structure":[13,174,273],"an":[15,250],"epithelial":[16,30,50,77,231],"layer,":[17],"acting":[18],"as":[19],"both":[20],"a":[21,69,119,124,155,257],"mechanical":[22],"support":[23],"forming":[25],"physical":[27],"interface":[28],"between":[29,142,239],"cells":[31,73,223,281],"surrounding":[34,163],"connective":[35],"tissue.":[36],"function":[38],"this":[40],"explored":[43],"here":[44],"context":[47],"monolayer":[51],"that":[52,60,89,111,117,230,274,286],"lines":[53],"colonic":[55],"crypt,":[56,177],"test-tube":[57],"shaped":[58],"invaginations":[59],"punctuate":[61],"lining":[63],"intestine":[66],"coordinate":[68],"regular":[70],"turnover":[71],"to":[74,97,104,197,213,237,278],"replenish":[75],"layer":[78],"every":[79],"few":[80],"days.":[81],"To":[82,116],"investigate":[83],"consequence":[85],"genetic":[87],"mutations":[88],"perturb":[90],"system":[92],"dynamics":[93],"can":[95,253,275],"lead":[96],"colorectal":[98],"cancer,":[99],"it":[100],"must":[101],"be":[102,254,289],"possible":[103,290],"track":[105],"emerging":[107],"tissue":[108,164,173],"level":[109],"changes":[110],"arise":[112,235],"crypt.":[115],"end,":[118],"theoretical":[120],"crypt":[121,133,194,209,244,272],"model":[122,134,153,228],"with":[123,220],"realistic,":[125],"deformable":[126],"geometry":[127,186],"required.":[129],"A":[130,182],"new":[131],"discrete":[132],"presented,":[136],"which":[137,178,252],"focuses":[138],"on":[139],"interaction":[141],"cell-":[143],"tissue-level":[145],"behaviour,":[146],"while":[147],"incorporating":[148],"key":[149],"subcellular":[150],"components.":[151],"contains":[154],"novel":[156],"description":[157],"musculature,":[166],"based":[167],"upon":[168],"experimental":[169],"observations":[170],"are":[179],"also":[180],"reported.":[181],"two-dimensional":[183],"(2D)":[184],"cross-sectional":[185],"considered,":[188],"shape":[191,206],"allowed":[196],"evolve":[198],"deform.":[200],"Simulation":[201],"results":[202],"reveal":[203],"how":[204],"may":[210,234],"contribute":[211],"mechanically":[212],"asymmetric":[215],"division":[216],"events":[217],"typically":[218],"associated":[219],"stem":[222],"at":[224,242],"base.":[226],"predicts":[229],"cell":[232,240,248],"migration":[233],"due":[236,277],"feedback":[238],"loss":[241],"collar":[245],"density-dependent":[247],"division,":[249],"hypothesis":[251],"investigated":[255],"wet":[258],"lab.":[259],"This":[260],"work":[261],"forms":[262],"basis":[264],"for":[265],"investigation":[266],"deformation":[269],"occur":[276],"proliferation":[279],"exhibiting":[282],"mutant":[283],"phenotypes,":[284],"experiments":[285],"would":[287],"not":[288],"vivo":[292],"or":[293],"vitro.":[295]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":8},{"year":2012,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
