{"id":"https://openalex.org/W2103078067","doi":"https://doi.org/10.1371/journal.pcbi.1002100","title":"From Structure Prediction to Genomic Screens for Novel Non-Coding RNAs","display_name":"From Structure Prediction to Genomic Screens for Novel Non-Coding RNAs","publication_year":2011,"publication_date":"2011-08-04","ids":{"openalex":"https://openalex.org/W2103078067","doi":"https://doi.org/10.1371/journal.pcbi.1002100","mag":"2103078067","pmid":"https://pubmed.ncbi.nlm.nih.gov/21829340"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1002100","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1002100","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1002100&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1002100&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004614832","display_name":"Jan Gorodkin","orcid":"https://orcid.org/0000-0001-5823-4000"},"institutions":[{"id":"https://openalex.org/I180519160","display_name":"Copenhagen Business School","ror":"https://ror.org/04sppb023","country_code":"DK","type":"education","lineage":["https://openalex.org/I180519160"]},{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]}],"countries":["DK"],"is_corresponding":true,"raw_author_name":"Jan Gorodkin","raw_affiliation_strings":["Center for non-coding RNA in Technology and Health, IBHV University of Copenhagen, Frederiksberg, Denmark. gorodkin@rth.dk","Center for non-coding RNA in Technology and Health, IBHV University of Copenhagen, Frederiksberg, Denmark","Division of Genetics and Bioinformatics, IBHV University of Copenhagen, Frederiksberg, Denmark"],"affiliations":[{"raw_affiliation_string":"Center for non-coding RNA in Technology and Health, IBHV University of Copenhagen, Frederiksberg, Denmark. gorodkin@rth.dk","institution_ids":["https://openalex.org/I180519160"]},{"raw_affiliation_string":"Center for non-coding RNA in Technology and Health, IBHV University of Copenhagen, Frederiksberg, Denmark","institution_ids":["https://openalex.org/I124055696"]},{"raw_affiliation_string":"Division of Genetics and Bioinformatics, IBHV University of Copenhagen, Frederiksberg, Denmark","institution_ids":["https://openalex.org/I124055696"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011771355","display_name":"Ivo L. Hofacker","orcid":"https://orcid.org/0000-0001-7132-0800"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]},{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]}],"countries":["AT","DK"],"is_corresponding":true,"raw_author_name":"Ivo L. Hofacker","raw_affiliation_strings":["Center for non-coding RNA in Technology and Health, IBHV University of Copenhagen, Frederiksberg, Denmark","Department of Theoretical Chemistry, University of Vienna, Wien, Austria"],"affiliations":[{"raw_affiliation_string":"Center for non-coding RNA in Technology and Health, IBHV University of Copenhagen, Frederiksberg, Denmark","institution_ids":["https://openalex.org/I124055696"]},{"raw_affiliation_string":"Department of Theoretical Chemistry, University of Vienna, Wien, Austria","institution_ids":["https://openalex.org/I129774422"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5004614832","https://openalex.org/A5011771355"],"corresponding_institution_ids":["https://openalex.org/I124055696","https://openalex.org/I129774422","https://openalex.org/I180519160"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":2.9248,"has_fulltext":true,"cited_by_count":44,"citation_normalized_percentile":{"value":0.91563872,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"7","issue":"8","first_page":"e1002100","last_page":"e1002100"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.7482278347015381},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.674368679523468},{"id":"https://openalex.org/keywords/non-coding-rna","display_name":"Non-coding RNA","score":0.6213129758834839},{"id":"https://openalex.org/keywords/nucleic-acid-structure","display_name":"Nucleic acid structure","score":0.6056997179985046},{"id":"https://openalex.org/keywords/base-pair","display_name":"Base pair","score":0.5352497696876526},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5277391672134399},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5162110924720764},{"id":"https://openalex.org/keywords/nucleic-acid-secondary-structure","display_name":"Nucleic acid secondary structure","score":0.4887835681438446},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.43845245242118835},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4325605034828186},{"id":"https://openalex.org/keywords/small-rna","display_name":"Small RNA","score":0.4137658178806305},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4111628234386444}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.7482278347015381},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.674368679523468},{"id":"https://openalex.org/C194993378","wikidata":"https://www.wikidata.org/wiki/Q427087","display_name":"Non-coding RNA","level":4,"score":0.6213129758834839},{"id":"https://openalex.org/C126142528","wikidata":"https://www.wikidata.org/wiki/Q3771876","display_name":"Nucleic acid structure","level":4,"score":0.6056997179985046},{"id":"https://openalex.org/C185581394","wikidata":"https://www.wikidata.org/wiki/Q145911","display_name":"Base pair","level":3,"score":0.5352497696876526},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5277391672134399},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5162110924720764},{"id":"https://openalex.org/C85468374","wikidata":"https://www.wikidata.org/wiki/Q6589957","display_name":"Nucleic acid secondary structure","level":4,"score":0.4887835681438446},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.43845245242118835},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4325605034828186},{"id":"https://openalex.org/C2779341050","wikidata":"https://www.wikidata.org/wiki/Q24287527","display_name":"Small RNA","level":4,"score":0.4137658178806305},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4111628234386444},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001709","descriptor_name":"Biotechnology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001709","descriptor_name":"Biotechnology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001709","descriptor_name":"Biotechnology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D059370","descriptor_name":"RNA Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059370","descriptor_name":"RNA Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059370","descriptor_name":"RNA Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1371/journal.pcbi.1002100","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1002100","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1002100&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:21829340","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21829340","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:info:fedora/oai:univie.ac.at:o:244803","is_oa":true,"landing_page_url":"https://phaidra.univie.ac.at/o:244803","pdf_url":null,"source":{"id":"https://openalex.org/S4306401993","display_name":"Phaidra (Universit\u00e4t Wien)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I129774422","host_organization_name":"University of Vienna","host_organization_lineage":["https://openalex.org/I129774422"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN:1553-7358","raw_type":"article"},{"id":"pmh:oai:doaj.org/article:d707bb23ca7143bca49ab2f0c31a4020","is_oa":true,"landing_page_url":"https://doaj.org/article/d707bb23ca7143bca49ab2f0c31a4020","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 7, Iss 8, p e1002100 (2011)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2159543","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3150283","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/5e09fbc9-236e-4efc-b607-f539b6317271","is_oa":false,"landing_page_url":"https://curis.ku.dk/portal/da/publications/from-structure-prediction-to-genomic-screens-for-novel-noncoding-rnas(5e09fbc9-236e-4efc-b607-f539b6317271).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/5e09fbc9-236e-4efc-b607-f539b6317271","is_oa":true,"landing_page_url":"https://researchprofiles.ku.dk/da/publications/5e09fbc9-236e-4efc-b607-f539b6317271","pdf_url":null,"source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Gorodkin , J & Hofacker , I L 2011 , ' From structure prediction to genomic screens for novel non-coding RNAs ' , PLoS Computational Biology , vol. 7 , no. 8 . https://doi.org/10.1371/journal.pcbi.1002100","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1002100","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1002100","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1002100&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy","score":0.7900000214576721}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2103078067.pdf","grobid_xml":"https://content.openalex.org/works/W2103078067.grobid-xml"},"referenced_works_count":125,"referenced_works":["https://openalex.org/W69573788","https://openalex.org/W1522740115","https://openalex.org/W1559047570","https://openalex.org/W1585306636","https://openalex.org/W1605441808","https://openalex.org/W1622263187","https://openalex.org/W1822105579","https://openalex.org/W1861164398","https://openalex.org/W1909512798","https://openalex.org/W1950410402","https://openalex.org/W1964789204","https://openalex.org/W1975148447","https://openalex.org/W1975437957","https://openalex.org/W1976021976","https://openalex.org/W1982136814","https://openalex.org/W1986234964","https://openalex.org/W1987502048","https://openalex.org/W1990853496","https://openalex.org/W1992361112","https://openalex.org/W1999746344","https://openalex.org/W1999807849","https://openalex.org/W2003016263","https://openalex.org/W2006107100","https://openalex.org/W2009818318","https://openalex.org/W2011368877","https://openalex.org/W2013152274","https://openalex.org/W2017965868","https://openalex.org/W2018216725","https://openalex.org/W2020021066","https://openalex.org/W2020812606","https://openalex.org/W2022863488","https://openalex.org/W2023206235","https://openalex.org/W2029503078","https://openalex.org/W2032136448","https://openalex.org/W2033907622","https://openalex.org/W2034255392","https://openalex.org/W2034393805","https://openalex.org/W2038598202","https://openalex.org/W2039925764","https://openalex.org/W2043568958","https://openalex.org/W2046335009","https://openalex.org/W2050256969","https://openalex.org/W2050385516","https://openalex.org/W2051911149","https://openalex.org/W2054613021","https://openalex.org/W2054931730","https://openalex.org/W2058494629","https://openalex.org/W2058970225","https://openalex.org/W2071883352","https://openalex.org/W2076963640","https://openalex.org/W2079611888","https://openalex.org/W2081694107","https://openalex.org/W2082124641","https://openalex.org/W2083381199","https://openalex.org/W2088938573","https://openalex.org/W2095145214","https://openalex.org/W2097936772","https://openalex.org/W2099686357","https://openalex.org/W2099819774","https://openalex.org/W2100271852","https://openalex.org/W2102066220","https://openalex.org/W2102225325","https://openalex.org/W2102304447","https://openalex.org/W2102424972","https://openalex.org/W2103028411","https://openalex.org/W2104135642","https://openalex.org/W2105070391","https://openalex.org/W2108298758","https://openalex.org/W2108770512","https://openalex.org/W2109491215","https://openalex.org/W2109553965","https://openalex.org/W2110356447","https://openalex.org/W2114094654","https://openalex.org/W2114998496","https://openalex.org/W2116410736","https://openalex.org/W2119767517","https://openalex.org/W2121918723","https://openalex.org/W2122032781","https://openalex.org/W2122035121","https://openalex.org/W2122679732","https://openalex.org/W2122695112","https://openalex.org/W2124662626","https://openalex.org/W2126504590","https://openalex.org/W2127640118","https://openalex.org/W2132046933","https://openalex.org/W2132885152","https://openalex.org/W2133279153","https://openalex.org/W2134033103","https://openalex.org/W2136085935","https://openalex.org/W2137042854","https://openalex.org/W2137356209","https://openalex.org/W2137640371","https://openalex.org/W2140302584","https://openalex.org/W2140651796","https://openalex.org/W2141411594","https://openalex.org/W2144137532","https://openalex.org/W2146573461","https://openalex.org/W2146691282","https://openalex.org/W2149429041","https://openalex.org/W2149548305","https://openalex.org/W2151464048","https://openalex.org/W2151538750","https://openalex.org/W2152327613","https://openalex.org/W2156443907","https://openalex.org/W2158714788","https://openalex.org/W2158826174","https://openalex.org/W2159117141","https://openalex.org/W2160226414","https://openalex.org/W2160845145","https://openalex.org/W2164299596","https://openalex.org/W2166745309","https://openalex.org/W2170157200","https://openalex.org/W2170909437","https://openalex.org/W2176555004","https://openalex.org/W2342051973","https://openalex.org/W2402294151","https://openalex.org/W2519703809","https://openalex.org/W2803927613","https://openalex.org/W2916408032","https://openalex.org/W3041019241","https://openalex.org/W4250052351","https://openalex.org/W4251866352","https://openalex.org/W6602798801","https://openalex.org/W6636160900","https://openalex.org/W7074172428"],"related_works":["https://openalex.org/W4386361828","https://openalex.org/W576226539","https://openalex.org/W2133070749","https://openalex.org/W2808896479","https://openalex.org/W4318218930","https://openalex.org/W1978187259","https://openalex.org/W2285854411","https://openalex.org/W2889983362","https://openalex.org/W2954092143","https://openalex.org/W81960683"],"abstract_inverted_index":{"Non-coding":[0],"RNAs":[1],"(ncRNAs)":[2],"are":[3,74],"receiving":[4],"more":[5,7,60,62],"and":[6,43,61,89,95,166,185,213,223,229],"attention":[8],"not":[9],"only":[10],"as":[11,19,135],"an":[12],"abundant":[13],"class":[14],"of":[15,30,45,51,59,72,81,86,99,120,147,157,182,189,225],"genes,":[16],"but":[17],"also":[18],"regulatory":[20,214],"structural":[21],"elements":[22],"(some":[23],"located":[24],"in":[25,53,128,163,173,192,199,207],"mRNAs).":[26],"A":[27],"key":[28,171],"feature":[29],"RNA":[31,46,133,183,205,215],"function":[32],"is":[33,84],"its":[34],"structure.":[35],"Computational":[36],"methods":[37,109,142,194],"were":[38],"developed":[39],"early":[40,141],"for":[41,110,126,202,209],"folding":[42,118,146,184],"prediction":[44,119],"structure":[47,83,134,154,216],"with":[48],"the":[49,57,82,96,132,136,179,190,221,226],"aim":[50],"assisting":[52],"functional":[54],"analysis.":[55],"With":[56],"discovery":[58],"ncRNAs,":[63],"it":[64,104],"has":[65,115,160],"become":[66],"clear":[67],"that":[68,195],"a":[69,78,170],"large":[70,79],"fraction":[71],"these":[73],"highly":[75],"structured.":[76],"Interestingly,":[77],"part":[80],"comprised":[85],"regular":[87],"Watson-Crick":[88],"GU":[90],"wobble":[91],"base":[92,158],"pairs.":[93],"This":[94],"increased":[97],"amount":[98],"available":[100],"genomes":[101],"have":[102,196],"made":[103],"possible":[105],"to":[106,123],"employ":[107],"structure-based":[108],"genomic":[111,129,174,200],"screens.":[112,175],"The":[113],"field":[114],"moved":[116],"from":[117],"single":[121,148],"sequences":[122],"computational":[124],"screens":[125,201],"ncRNAs":[127],"sequence":[130],"using":[131],"main":[137],"characteristic":[138],"feature.":[139],"Whereas":[140],"focused":[143],"on":[144,153,217],"energy-directed":[145],"sequences,":[149],"comparative":[150],"analysis":[151],"based":[152],"preserving":[155],"changes":[156],"pairs":[159],"been":[161,197],"efficient":[162],"improving":[164],"accuracy,":[165],"today":[167],"this":[168],"constitutes":[169],"component":[172],"Here,":[176],"we":[177],"cover":[178],"basic":[180],"principles":[181],"touch":[186],"upon":[187],"some":[188],"concepts":[191],"current":[193],"applied":[198],"de":[203],"novo":[204],"structures":[206],"searches":[208],"novel":[210],"ncRNA":[211],"genes":[212],"mRNAs.":[218],"We":[219],"discuss":[220],"strengths":[222],"weaknesses":[224],"different":[227],"strategies":[228],"how":[230],"they":[231],"can":[232],"complement":[233],"each":[234],"other.":[235]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":9},{"year":2012,"cited_by_count":7}],"updated_date":"2026-03-16T09:10:04.655348","created_date":"2025-10-10T00:00:00"}
