{"id":"https://openalex.org/W1967541074","doi":"https://doi.org/10.1371/journal.pcbi.1002079","title":"Generative Embedding for Model-Based Classification of fMRI Data","display_name":"Generative Embedding for Model-Based Classification of fMRI Data","publication_year":2011,"publication_date":"2011-06-23","ids":{"openalex":"https://openalex.org/W1967541074","doi":"https://doi.org/10.1371/journal.pcbi.1002079","mag":"1967541074","pmid":"https://pubmed.ncbi.nlm.nih.gov/21731479"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1002079","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1002079","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1002079&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1002079&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070513586","display_name":"Kay H. Brodersen","orcid":"https://orcid.org/0000-0002-7707-090X"},"institutions":[{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4210115727","display_name":"Laboratory for Social and Neural Systems Research","ror":"https://ror.org/021p56f43","country_code":"CH","type":"facility","lineage":["https://openalex.org/I202697423","https://openalex.org/I4210100468","https://openalex.org/I4210115727"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Kay H. Brodersen","raw_affiliation_strings":["Department of Computer Science, ETH Zurich, Zurich, Switzerland. kay.brodersen@inf.ethz.ch","Laboratory for Social and Neural Systems Research, Department of Economics, University of Zurich, Zurich, Switzerland","Department of Computer Science, ETH Zurich, Zurich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, ETH Zurich, Zurich, Switzerland. kay.brodersen@inf.ethz.ch","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Laboratory for Social and Neural Systems Research, Department of Economics, University of Zurich, Zurich, Switzerland","institution_ids":["https://openalex.org/I4210115727","https://openalex.org/I202697423"]},{"raw_affiliation_string":"Department of Computer Science, ETH Zurich, Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066928103","display_name":"Thomas M. Schofield","orcid":null},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]},{"id":"https://openalex.org/I165524941","display_name":"Wellcome Centre for Human Neuroimaging","ror":"https://ror.org/02704qw51","country_code":"GB","type":"facility","lineage":["https://openalex.org/I124357947","https://openalex.org/I165524941","https://openalex.org/I45129253","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Thomas M. Schofield","raw_affiliation_strings":["Wellcome Trust Centre for Neuroimaging, University College London, London, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wellcome Trust Centre for Neuroimaging, University College London, London, United Kingdom","institution_ids":["https://openalex.org/I165524941","https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078241189","display_name":"Alexander Leff","orcid":"https://orcid.org/0000-0002-0831-3541"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]},{"id":"https://openalex.org/I165524941","display_name":"Wellcome Centre for Human Neuroimaging","ror":"https://ror.org/02704qw51","country_code":"GB","type":"facility","lineage":["https://openalex.org/I124357947","https://openalex.org/I165524941","https://openalex.org/I45129253","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alexander P. Leff","raw_affiliation_strings":["Wellcome Trust Centre for Neuroimaging, University College London, London, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wellcome Trust Centre for Neuroimaging, University College London, London, United Kingdom","institution_ids":["https://openalex.org/I165524941","https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016073964","display_name":"Cheng Soon Ong","orcid":"https://orcid.org/0000-0002-2302-9733"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Cheng Soon Ong","raw_affiliation_strings":["Department of Computer Science, ETH Zurich, Zurich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, ETH Zurich, Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088431600","display_name":"Ekaterina I. Lomakina","orcid":null},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4210115727","display_name":"Laboratory for Social and Neural Systems Research","ror":"https://ror.org/021p56f43","country_code":"CH","type":"facility","lineage":["https://openalex.org/I202697423","https://openalex.org/I4210100468","https://openalex.org/I4210115727"]},{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Ekaterina I. Lomakina","raw_affiliation_strings":["Department of Computer Science, ETH Zurich, Zurich, Switzerland","Laboratory for Social and Neural Systems Research, Department of Economics, University of Zurich, Zurich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, ETH Zurich, Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Laboratory for Social and Neural Systems Research, Department of Economics, University of Zurich, Zurich, Switzerland","institution_ids":["https://openalex.org/I4210115727","https://openalex.org/I202697423"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038199211","display_name":"Joachim M. Buhmann","orcid":"https://orcid.org/0000-0002-6613-7101"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Joachim M. Buhmann","raw_affiliation_strings":["Department of Computer Science, ETH Zurich, Zurich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, ETH Zurich, Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016719332","display_name":"Klaas \u0395. Stephan","orcid":"https://orcid.org/0000-0002-8594-9092"},"institutions":[{"id":"https://openalex.org/I165524941","display_name":"Wellcome Centre for Human Neuroimaging","ror":"https://ror.org/02704qw51","country_code":"GB","type":"facility","lineage":["https://openalex.org/I124357947","https://openalex.org/I165524941","https://openalex.org/I45129253","https://openalex.org/I87048295"]},{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]},{"id":"https://openalex.org/I4210115727","display_name":"Laboratory for Social and Neural Systems Research","ror":"https://ror.org/021p56f43","country_code":"CH","type":"facility","lineage":["https://openalex.org/I202697423","https://openalex.org/I4210100468","https://openalex.org/I4210115727"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["CH","GB"],"is_corresponding":false,"raw_author_name":"Klaas E. Stephan","raw_affiliation_strings":["Laboratory for Social and Neural Systems Research, Department of Economics, University of Zurich, Zurich, Switzerland","Wellcome Trust Centre for Neuroimaging, University College London, London, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory for Social and Neural Systems Research, Department of Economics, University of Zurich, Zurich, Switzerland","institution_ids":["https://openalex.org/I4210115727","https://openalex.org/I202697423"]},{"raw_affiliation_string":"Wellcome Trust Centre for Neuroimaging, University College London, London, United Kingdom","institution_ids":["https://openalex.org/I165524941","https://openalex.org/I45129253"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5070513586"],"corresponding_institution_ids":["https://openalex.org/I202697423","https://openalex.org/I35440088","https://openalex.org/I4210115727"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":5.3952,"has_fulltext":true,"cited_by_count":176,"citation_normalized_percentile":{"value":0.9615578,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"7","issue":"6","first_page":"e1002079","last_page":"e1002079"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10581","display_name":"Neural dynamics and brain function","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9871000051498413,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.8671072721481323},{"id":"https://openalex.org/keywords/discriminative-model","display_name":"Discriminative model","score":0.8310158848762512},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7026991844177246},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6800016164779663},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6112609505653381},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.5789264440536499},{"id":"https://openalex.org/keywords/generative-model","display_name":"Generative model","score":0.5784700512886047},{"id":"https://openalex.org/keywords/functional-magnetic-resonance-imaging","display_name":"Functional magnetic resonance imaging","score":0.5249921083450317},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.492306113243103},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.4859544038772583},{"id":"https://openalex.org/keywords/generative-grammar","display_name":"Generative grammar","score":0.4786069095134735},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.44183599948883057},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.08773931860923767}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.8671072721481323},{"id":"https://openalex.org/C97931131","wikidata":"https://www.wikidata.org/wiki/Q5282087","display_name":"Discriminative model","level":2,"score":0.8310158848762512},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7026991844177246},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6800016164779663},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6112609505653381},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.5789264440536499},{"id":"https://openalex.org/C167966045","wikidata":"https://www.wikidata.org/wiki/Q5532625","display_name":"Generative model","level":3,"score":0.5784700512886047},{"id":"https://openalex.org/C2779226451","wikidata":"https://www.wikidata.org/wiki/Q903809","display_name":"Functional magnetic resonance imaging","level":2,"score":0.5249921083450317},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.492306113243103},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.4859544038772583},{"id":"https://openalex.org/C39890363","wikidata":"https://www.wikidata.org/wiki/Q36108","display_name":"Generative grammar","level":2,"score":0.4786069095134735},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.44183599948883057},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.08773931860923767},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000328","descriptor_name":"Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000328","descriptor_name":"Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000328","descriptor_name":"Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000368","descriptor_name":"Aged","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000368","descriptor_name":"Aged","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000368","descriptor_name":"Aged","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001037","descriptor_name":"Aphasia","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D001037","descriptor_name":"Aphasia","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D001037","descriptor_name":"Aphasia","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008875","descriptor_name":"Middle Aged","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008875","descriptor_name":"Middle Aged","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008875","descriptor_name":"Middle Aged","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009422","descriptor_name":"Nervous System Diseases","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D009422","descriptor_name":"Nervous System Diseases","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D009422","descriptor_name":"Nervous System Diseases","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D009422","descriptor_name":"Nervous System Diseases","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D009422","descriptor_name":"Nervous System Diseases","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D009422","descriptor_name":"Nervous System Diseases","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013067","descriptor_name":"Speech Perception","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013067","descriptor_name":"Speech Perception","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013067","descriptor_name":"Speech Perception","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":13,"locations":[{"id":"doi:10.1371/journal.pcbi.1002079","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1002079","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1002079&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:21731479","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21731479","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:www.zora.uzh.ch:48694","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401281","display_name":"Zurich Open Repository and Archive (University of Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I202697423","host_organization_name":"University of Zurich","host_organization_lineage":["https://openalex.org/I202697423"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Brodersen, Kay H; Schofield, Thomas M; Leff, Alexander P; Ong, Cheng S; Lomakina, Ekaterina I; Buhmann, Joachim M; Stephan, Klaas E  (2011). Generative embedding for model-based classification of FMRI data.  PLoS Computational Biology, 7(6):e1002079.","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.230.6425","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.230.6425","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.fil.ion.ucl.ac.uk/spm/doc/papers/Brodersen_PLoS_7_e1002079_2011.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.290.4667","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.290.4667","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/72/d7/PLoS_Comput_Biol_2011_Jun_23_7(6)_e1002079.tar.gz","raw_type":"text"},{"id":"pmh:oai:RePEc:plo:pcbi00:1002079","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002079","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:1dd392b3a0374ad3b308848f36fe3ff9","is_oa":true,"landing_page_url":"https://doaj.org/article/1dd392b3a0374ad3b308848f36fe3ff9","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 7, Iss 6, p e1002079 (2011)","raw_type":"article"},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:1316954","is_oa":false,"landing_page_url":"https://discovery.ucl.ac.uk/id/eprint/1316954/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"   PLOS COMPUT BIOL , 7  (6)    , Article e1002079. (2011)      ","raw_type":"Article"},{"id":"pmh:oai:figshare.com:article/135696","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Generative_Embedding_for_Model_Based_Classification_of_fMRI_Data/135696","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:pubmedcentral.nih.gov:3121683","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3121683","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:www.research-collection.ethz.ch:20.500.11850/38876","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11850/38876","pdf_url":null,"source":{"id":"https://openalex.org/S4306402302","display_name":"Repository for Publications and Research Data (ETH Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I35440088","host_organization_name":"ETH Zurich","host_organization_lineage":["https://openalex.org/I35440088"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, 7 (6)","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"doi:10.3929/ethz-b-000038876","is_oa":true,"landing_page_url":"https://doi.org/10.3929/ethz-b-000038876","pdf_url":null,"source":{"id":"https://openalex.org/S7407051236","display_name":"ETH Z\u00fcrich Research Collection","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"},{"id":"doi:10.5167/uzh-48694","is_oa":true,"landing_page_url":"https://doi.org/10.5167/uzh-48694","pdf_url":null,"source":{"id":"https://openalex.org/S7407051291","display_name":"Universit\u00e4t Z\u00fcrich, ZORA","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1002079","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1002079","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1002079&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Reduced inequalities","score":0.699999988079071,"id":"https://metadata.un.org/sdg/10"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320319990","display_name":"National Institute for Health and Care Research","ror":"https://ror.org/0187kwz08"},{"id":"https://openalex.org/F4320323874","display_name":"Universit\u00e4t Z\u00fcrich","ror":"https://ror.org/02crff812"},{"id":"https://openalex.org/F4320327577","display_name":"SystemsX.ch","ror":"https://ror.org/02s09gf16"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1967541074.pdf","grobid_xml":"https://content.openalex.org/works/W1967541074.grobid-xml"},"referenced_works_count":124,"referenced_works":["https://openalex.org/W173906397","https://openalex.org/W1480714498","https://openalex.org/W1495616333","https://openalex.org/W1510073064","https://openalex.org/W1511061317","https://openalex.org/W1524229024","https://openalex.org/W1560724230","https://openalex.org/W1561930699","https://openalex.org/W1576213419","https://openalex.org/W1589362500","https://openalex.org/W1747314365","https://openalex.org/W1964859800","https://openalex.org/W1965775572","https://openalex.org/W1968635050","https://openalex.org/W1969533226","https://openalex.org/W1974105735","https://openalex.org/W1975006876","https://openalex.org/W1978510898","https://openalex.org/W1979062697","https://openalex.org/W1980914952","https://openalex.org/W1985237413","https://openalex.org/W1985969995","https://openalex.org/W1986014162","https://openalex.org/W1986491573","https://openalex.org/W1987298438","https://openalex.org/W1987733777","https://openalex.org/W1988979668","https://openalex.org/W1993120888","https://openalex.org/W1997228011","https://openalex.org/W1997677703","https://openalex.org/W1998801816","https://openalex.org/W1999110283","https://openalex.org/W2001830552","https://openalex.org/W2006017444","https://openalex.org/W2007226897","https://openalex.org/W2007483873","https://openalex.org/W2007804187","https://openalex.org/W2011099767","https://openalex.org/W2011188952","https://openalex.org/W2013016035","https://openalex.org/W2013176407","https://openalex.org/W2013311872","https://openalex.org/W2015456912","https://openalex.org/W2015877124","https://openalex.org/W2016565502","https://openalex.org/W2018630598","https://openalex.org/W2021768951","https://openalex.org/W2032215616","https://openalex.org/W2036084760","https://openalex.org/W2041716195","https://openalex.org/W2041853331","https://openalex.org/W2047830667","https://openalex.org/W2048631316","https://openalex.org/W2049071913","https://openalex.org/W2050200583","https://openalex.org/W2053773581","https://openalex.org/W2056957254","https://openalex.org/W2064437806","https://openalex.org/W2073854913","https://openalex.org/W2079366972","https://openalex.org/W2087347434","https://openalex.org/W2089763487","https://openalex.org/W2092730500","https://openalex.org/W2095651675","https://openalex.org/W2095978766","https://openalex.org/W2096858107","https://openalex.org/W2097936772","https://openalex.org/W2099571672","https://openalex.org/W2099857613","https://openalex.org/W2101807845","https://openalex.org/W2102693469","https://openalex.org/W2104128541","https://openalex.org/W2106664807","https://openalex.org/W2108995755","https://openalex.org/W2112081648","https://openalex.org/W2113257799","https://openalex.org/W2113870592","https://openalex.org/W2116649573","https://openalex.org/W2117663940","https://openalex.org/W2120111102","https://openalex.org/W2121148108","https://openalex.org/W2122686681","https://openalex.org/W2123923307","https://openalex.org/W2124158580","https://openalex.org/W2124839923","https://openalex.org/W2125574651","https://openalex.org/W2127905678","https://openalex.org/W2133611817","https://openalex.org/W2134585061","https://openalex.org/W2135173838","https://openalex.org/W2136857108","https://openalex.org/W2139037554","https://openalex.org/W2142535091","https://openalex.org/W2146562219","https://openalex.org/W2151531457","https://openalex.org/W2153939756","https://openalex.org/W2154776925","https://openalex.org/W2155164847","https://openalex.org/W2156606946","https://openalex.org/W2158485497","https://openalex.org/W2159383776","https://openalex.org/W2160360539","https://openalex.org/W2162887414","https://openalex.org/W2165765408","https://openalex.org/W2166023018","https://openalex.org/W2166473218","https://openalex.org/W2168217710","https://openalex.org/W2171831801","https://openalex.org/W2419658023","https://openalex.org/W2911546748","https://openalex.org/W3003413895","https://openalex.org/W3089669417","https://openalex.org/W3104148512","https://openalex.org/W3144619878","https://openalex.org/W4210781595","https://openalex.org/W4231339208","https://openalex.org/W4247236552","https://openalex.org/W6630748648","https://openalex.org/W6634338208","https://openalex.org/W6635107798","https://openalex.org/W6672247373","https://openalex.org/W6681898861","https://openalex.org/W6682443497","https://openalex.org/W6758939307"],"related_works":["https://openalex.org/W2987280934","https://openalex.org/W2093104230","https://openalex.org/W2593887162","https://openalex.org/W4384918963","https://openalex.org/W4365211920","https://openalex.org/W2128027845","https://openalex.org/W4386184937","https://openalex.org/W3014948380","https://openalex.org/W1493875009","https://openalex.org/W2751624083"],"abstract_inverted_index":{"Decoding":[0],"models,":[1],"such":[2,72,143],"as":[3,73,144],"those":[4],"underlying":[5],"multivariate":[6],"classification":[7,111,117,240],"algorithms,":[8],"have":[9],"been":[10],"increasingly":[11],"used":[12],"to":[13,46,57,115],"infer":[14],"cognitive":[15],"or":[16],"clinical":[17,154,213],"brain":[18,23],"states":[19,257],"from":[20,60],"measures":[21],"of":[22,34,153,166,178,196,202,208,228,242,275,284],"activity":[24],"obtained":[25],"by":[26,40,89,134,211],"functional":[27],"magnetic":[28],"resonance":[29],"imaging":[30],"(fMRI).":[31],"The":[32],"practicality":[33],"current":[35],"classifiers,":[36],"however,":[37],"is":[38],"restricted":[39],"two":[41,122],"major":[42],"challenges.":[43],"First,":[44],"due":[45],"the":[47,200,206,267],"high":[48,263],"data":[49],"dimensionality":[50],"and":[51,120,148,171,189,222,244,249],"low":[52],"sample":[53],"size,":[54],"algorithms":[55],"struggle":[56],"separate":[58],"informative":[59],"uninformative":[61],"features,":[62],"resulting":[63],"in":[64,139,199,215,273,277,291],"poor":[65],"generalization":[66],"performance.":[67],"Second,":[68],"popular":[69],"discriminative":[70,102,136],"methods":[71],"support":[74],"vector":[75],"machines":[76],"(SVMs)":[77],"rarely":[78],"afford":[79],"mechanistic":[80,151],"interpretability.":[81],"In":[82],"this":[83],"paper,":[84],"we":[85,157,217],"address":[86],"these":[87],"issues":[88],"proposing":[90],"a":[91,164,175,186,212,226,237],"novel":[92],"generative-embedding":[93],"approach":[94,105,210],"that":[95,281],"incorporates":[96],"neurobiologically":[97],"interpretable":[98],"generative":[99,159,180,197,285],"models":[100,169],"into":[101,295],"classifiers.":[103],"Our":[104],"extends":[106],"previous":[107],"work":[108],"on":[109],"trial-by-trial":[110],"for":[112,118,161,182,193],"electrophysiological":[113],"recordings":[114],"subject-by-subject":[116],"fMRI":[119,162],"offers":[121],"key":[123],"advantages":[124],"over":[125],"conventional":[126,247],"methods:":[127],"it":[128,149],"may":[129,287],"provide":[130,185,288],"more":[131,297],"accurate":[132],"predictions":[133],"exploiting":[135],"information":[137],"encoded":[138],"'hidden'":[140],"physiological":[141],"quantities":[142],"synaptic":[145],"connection":[146],"strengths;":[147],"affords":[150],"interpretability":[152],"classifications.":[155],"Here,":[156],"introduce":[158],"embedding":[160,181,198,235,286],"using":[163,225],"combination":[165],"dynamic":[167],"causal":[168],"(DCMs)":[170],"SVMs.":[172],"We":[173,204,279],"propose":[174],"general":[176],"procedure":[177],"DCM-based":[179],"subject-wise":[183],"classification,":[184],"concrete":[187],"implementation,":[188],"suggest":[190],"good-practice":[191],"guidelines":[192],"unbiased":[194],"application":[195],"context":[201],"fMRI.":[203],"illustrate":[205],"utility":[207],"our":[209],"example":[214,253],"which":[216],"classify":[218],"moderately":[219],"aphasic":[220],"patients":[221],"healthy":[223],"controls":[224],"DCM":[227],"thalamo-temporal":[229],"regions":[230],"during":[231],"speech":[232],"processing.":[233],"Generative":[234],"achieves":[236],"near-perfect":[238],"balanced":[239],"accuracy":[241,264],"98%":[243],"significantly":[245],"outperforms":[246],"activation-based":[248],"correlation-based":[250],"methods.":[251],"This":[252],"demonstrates":[254],"how":[255],"disease":[256],"can":[258],"be":[259,270],"detected":[260],"with":[261],"very":[262],"and,":[265],"at":[266],"same":[268],"time,":[269],"interpreted":[271],"mechanistically":[272],"terms":[274],"abnormalities":[276],"connectivity.":[278],"envisage":[280],"future":[282],"applications":[283],"crucial":[289],"advances":[290],"dissecting":[292],"spectrum":[293],"disorders":[294],"physiologically":[296],"well-defined":[298],"subgroups.":[299]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":15},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":20},{"year":2018,"cited_by_count":16},{"year":2017,"cited_by_count":23},{"year":2016,"cited_by_count":13},{"year":2015,"cited_by_count":12},{"year":2014,"cited_by_count":10},{"year":2013,"cited_by_count":16},{"year":2012,"cited_by_count":10}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
