{"id":"https://openalex.org/W1984372426","doi":"https://doi.org/10.1371/journal.pcbi.1002056","title":"An Acidic Loop and Cognate Phosphorylation Sites Define a Molecular Switch That Modulates Ubiquitin Charging Activity in Cdc34-Like Enzymes","display_name":"An Acidic Loop and Cognate Phosphorylation Sites Define a Molecular Switch That Modulates Ubiquitin Charging Activity in Cdc34-Like Enzymes","publication_year":2011,"publication_date":"2011-05-26","ids":{"openalex":"https://openalex.org/W1984372426","doi":"https://doi.org/10.1371/journal.pcbi.1002056","mag":"1984372426","pmid":"https://pubmed.ncbi.nlm.nih.gov/21637798"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1002056","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1002056","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1002056&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1002056&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089976447","display_name":"Elena Papaleo","orcid":"https://orcid.org/0000-0002-7376-5894"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Elena Papaleo","raw_affiliation_strings":["Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy. elena.papaleo@unimib.it","Department of Biotechnology and Biosciences, University of Milano - Bicocca, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy. elena.papaleo@unimib.it","institution_ids":["https://openalex.org/I66752286"]},{"raw_affiliation_string":"Department of Biotechnology and Biosciences, University of Milano - Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009393378","display_name":"Valeria Ranzani","orcid":null},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Valeria Ranzani","raw_affiliation_strings":["Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy","Department of Biotechnology and Biosciences, University of Milano - Bicocca, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]},{"raw_affiliation_string":"Department of Biotechnology and Biosciences, University of Milano - Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025769567","display_name":"Farida Tripodi","orcid":"https://orcid.org/0000-0003-1246-979X"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Farida Tripodi","raw_affiliation_strings":["Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy","Department of Biotechnology and Biosciences, University of Milano - Bicocca, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]},{"raw_affiliation_string":"Department of Biotechnology and Biosciences, University of Milano - Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029612257","display_name":"Alessandro Vitriolo","orcid":"https://orcid.org/0000-0002-1462-8064"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alessandro Vitriolo","raw_affiliation_strings":["Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy","Department of Biotechnology and Biosciences, University of Milano - Bicocca, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]},{"raw_affiliation_string":"Department of Biotechnology and Biosciences, University of Milano - Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054668405","display_name":"Claudia Cirulli","orcid":"https://orcid.org/0000-0001-8073-9961"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Claudia Cirulli","raw_affiliation_strings":["Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy","Department of Biotechnology and Biosciences, University of Milano - Bicocca, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]},{"raw_affiliation_string":"Department of Biotechnology and Biosciences, University of Milano - Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111616875","display_name":"Piercarlo Fantucci","orcid":null},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Piercarlo Fantucci","raw_affiliation_strings":["Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy","Department of Biotechnology and Biosciences, University of Milano - Bicocca, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]},{"raw_affiliation_string":"Department of Biotechnology and Biosciences, University of Milano - Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053427006","display_name":"Lilia Alberghina","orcid":"https://orcid.org/0000-0003-1694-931X"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Lilia Alberghina","raw_affiliation_strings":["Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy","Department of Biotechnology and Biosciences, University of Milano - Bicocca, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]},{"raw_affiliation_string":"Department of Biotechnology and Biosciences, University of Milano - Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063056739","display_name":"Marco Vanoni","orcid":"https://orcid.org/0000-0002-8690-2587"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Vanoni","raw_affiliation_strings":["Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy","Department of Biotechnology and Biosciences, University of Milano - Bicocca, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]},{"raw_affiliation_string":"Department of Biotechnology and Biosciences, University of Milano - Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062442747","display_name":"Luca De Gioia","orcid":"https://orcid.org/0000-0003-2873-3663"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Luca De Gioia","raw_affiliation_strings":["Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy","Department of Biotechnology and Biosciences, University of Milano - Bicocca, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]},{"raw_affiliation_string":"Department of Biotechnology and Biosciences, University of Milano - Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037747320","display_name":"Paola Coccetti","orcid":"https://orcid.org/0000-0001-5898-5883"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Paola Coccetti","raw_affiliation_strings":["Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy","Department of Biotechnology and Biosciences, University of Milano - Bicocca, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]},{"raw_affiliation_string":"Department of Biotechnology and Biosciences, University of Milano - Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5037747320","https://openalex.org/A5089976447"],"corresponding_institution_ids":["https://openalex.org/I66752286"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":1.8674,"has_fulltext":true,"cited_by_count":34,"citation_normalized_percentile":{"value":0.847811,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"7","issue":"5","first_page":"e1002056","last_page":"e1002056"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10583","display_name":"Cancer-related Molecular Pathways","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ubiquitin","display_name":"Ubiquitin","score":0.7908972501754761},{"id":"https://openalex.org/keywords/phosphorylation","display_name":"Phosphorylation","score":0.7243343591690063},{"id":"https://openalex.org/keywords/deubiquitinating-enzyme","display_name":"Deubiquitinating enzyme","score":0.687477171421051},{"id":"https://openalex.org/keywords/serine","display_name":"Serine","score":0.6232901811599731},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.584132194519043},{"id":"https://openalex.org/keywords/casein-kinase-1","display_name":"Casein kinase 1","score":0.5491786003112793},{"id":"https://openalex.org/keywords/casein-kinase-2","display_name":"Casein kinase 2","score":0.5399681329727173},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.48591890931129456},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.48435649275779724},{"id":"https://openalex.org/keywords/ubiquitin-conjugating-enzyme","display_name":"Ubiquitin-conjugating enzyme","score":0.4543246328830719},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.42976754903793335},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.38367760181427},{"id":"https://openalex.org/keywords/protein-kinase-a","display_name":"Protein kinase A","score":0.3222739100456238},{"id":"https://openalex.org/keywords/ubiquitin-ligase","display_name":"Ubiquitin ligase","score":0.29646387696266174},{"id":"https://openalex.org/keywords/mitogen-activated-protein-kinase-kinase","display_name":"Mitogen-activated protein kinase kinase","score":0.10987716913223267}],"concepts":[{"id":"https://openalex.org/C25602115","wikidata":"https://www.wikidata.org/wiki/Q407111","display_name":"Ubiquitin","level":3,"score":0.7908972501754761},{"id":"https://openalex.org/C11960822","wikidata":"https://www.wikidata.org/wiki/Q242736","display_name":"Phosphorylation","level":2,"score":0.7243343591690063},{"id":"https://openalex.org/C102658986","wikidata":"https://www.wikidata.org/wiki/Q5266092","display_name":"Deubiquitinating enzyme","level":4,"score":0.687477171421051},{"id":"https://openalex.org/C2776414213","wikidata":"https://www.wikidata.org/wiki/Q183290","display_name":"Serine","level":3,"score":0.6232901811599731},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.584132194519043},{"id":"https://openalex.org/C160110348","wikidata":"https://www.wikidata.org/wiki/Q5048387","display_name":"Casein kinase 1","level":4,"score":0.5491786003112793},{"id":"https://openalex.org/C143910341","wikidata":"https://www.wikidata.org/wiki/Q21102140","display_name":"Casein kinase 2","level":5,"score":0.5399681329727173},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.48591890931129456},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.48435649275779724},{"id":"https://openalex.org/C182561583","wikidata":"https://www.wikidata.org/wiki/Q7876535","display_name":"Ubiquitin-conjugating enzyme","level":5,"score":0.4543246328830719},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.42976754903793335},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.38367760181427},{"id":"https://openalex.org/C97029542","wikidata":"https://www.wikidata.org/wiki/Q281417","display_name":"Protein kinase A","level":3,"score":0.3222739100456238},{"id":"https://openalex.org/C134459356","wikidata":"https://www.wikidata.org/wiki/Q4274835","display_name":"Ubiquitin ligase","level":4,"score":0.29646387696266174},{"id":"https://openalex.org/C90934575","wikidata":"https://www.wikidata.org/wiki/Q6593810","display_name":"Mitogen-activated protein kinase kinase","level":4,"score":0.10987716913223267},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011994","descriptor_name":"Recombinant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011994","descriptor_name":"Recombinant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011994","descriptor_name":"Recombinant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011994","descriptor_name":"Recombinant Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011994","descriptor_name":"Recombinant Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011994","descriptor_name":"Recombinant Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025801","descriptor_name":"Ubiquitin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D025801","descriptor_name":"Ubiquitin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D025801","descriptor_name":"Ubiquitin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D025801","descriptor_name":"Ubiquitin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D025801","descriptor_name":"Ubiquitin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D025801","descriptor_name":"Ubiquitin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D043743","descriptor_name":"Ubiquitin-Protein Ligase Complexes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D043743","descriptor_name":"Ubiquitin-Protein Ligase Complexes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D043743","descriptor_name":"Ubiquitin-Protein Ligase Complexes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D043743","descriptor_name":"Ubiquitin-Protein Ligase Complexes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D043743","descriptor_name":"Ubiquitin-Protein Ligase Complexes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D043743","descriptor_name":"Ubiquitin-Protein Ligase Complexes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D044763","descriptor_name":"Ubiquitin-Conjugating Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D044763","descriptor_name":"Ubiquitin-Conjugating Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D044763","descriptor_name":"Ubiquitin-Conjugating Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D044763","descriptor_name":"Ubiquitin-Conjugating Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D044763","descriptor_name":"Ubiquitin-Conjugating Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D044763","descriptor_name":"Ubiquitin-Conjugating Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064173","descriptor_name":"Anaphase-Promoting Complex-Cyclosome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064173","descriptor_name":"Anaphase-Promoting Complex-Cyclosome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064173","descriptor_name":"Anaphase-Promoting Complex-Cyclosome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1371/journal.pcbi.1002056","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1002056","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1002056&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:21637798","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21637798","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.290.5436","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.290.5436","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/37/c2/PLoS_Comput_Biol_2011_May_26_7(5)_e1002056.tar.gz","raw_type":"text"},{"id":"pmh:oai:air.unimi.it:2434/466209","is_oa":true,"landing_page_url":"http://hdl.handle.net/2434/466209","pdf_url":null,"source":{"id":"https://openalex.org/S4306400516","display_name":"Archivio Istituzionale della Ricerca (Universita Degli Studi Di Milano)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I189158943","host_organization_name":"University of Milan","host_organization_lineage":["https://openalex.org/I189158943"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:boa.unimib.it:10281/22636","is_oa":true,"landing_page_url":"http://hdl.handle.net/10281/22636","pdf_url":null,"source":{"id":"https://openalex.org/S4306401259","display_name":"BOA (University of Milano-Bicocca)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I66752286","host_organization_name":"University of Milano-Bicocca","host_organization_lineage":["https://openalex.org/I66752286"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:22b822c3ec764c19bb2f11aac9ec5c03","is_oa":true,"landing_page_url":"https://doaj.org/article/22b822c3ec764c19bb2f11aac9ec5c03","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 7, Iss 5, p e1002056 (2011)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/136444","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/An_Acidic_Loop_and_Cognate_Phosphorylation_Sites_Define_a_Molecular_Switch_That_Modulates_Ubiquitin_Charging_Activity_in_Cdc34_Like_Enzymes/136444","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:pubmedcentral.nih.gov:3102755","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3102755","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1002056","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1002056","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1002056&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321873","display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca","ror":"https://ror.org/0166hxq48"},{"id":"https://openalex.org/F4320332162","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1984372426.pdf","grobid_xml":"https://content.openalex.org/works/W1984372426.grobid-xml"},"referenced_works_count":66,"referenced_works":["https://openalex.org/W95014119","https://openalex.org/W161361778","https://openalex.org/W1558541683","https://openalex.org/W1566221754","https://openalex.org/W1762734860","https://openalex.org/W1968437620","https://openalex.org/W1969434750","https://openalex.org/W1972378799","https://openalex.org/W1974637570","https://openalex.org/W1978505170","https://openalex.org/W1979999811","https://openalex.org/W1981916517","https://openalex.org/W1982224515","https://openalex.org/W1986060150","https://openalex.org/W1987097510","https://openalex.org/W1990649805","https://openalex.org/W1991258715","https://openalex.org/W1998140907","https://openalex.org/W1999863087","https://openalex.org/W2001813271","https://openalex.org/W2002302312","https://openalex.org/W2003340927","https://openalex.org/W2005788382","https://openalex.org/W2010791652","https://openalex.org/W2013770400","https://openalex.org/W2013771325","https://openalex.org/W2022058405","https://openalex.org/W2024225780","https://openalex.org/W2028157992","https://openalex.org/W2029287748","https://openalex.org/W2029616605","https://openalex.org/W2036806530","https://openalex.org/W2041159245","https://openalex.org/W2045708645","https://openalex.org/W2045810776","https://openalex.org/W2048124079","https://openalex.org/W2050043175","https://openalex.org/W2051419563","https://openalex.org/W2055496419","https://openalex.org/W2056468619","https://openalex.org/W2059694583","https://openalex.org/W2060458509","https://openalex.org/W2067174909","https://openalex.org/W2070509485","https://openalex.org/W2071794983","https://openalex.org/W2077242674","https://openalex.org/W2083690210","https://openalex.org/W2087921502","https://openalex.org/W2098921015","https://openalex.org/W2102936201","https://openalex.org/W2103210708","https://openalex.org/W2104267885","https://openalex.org/W2113361442","https://openalex.org/W2117551036","https://openalex.org/W2119178529","https://openalex.org/W2121781216","https://openalex.org/W2123279486","https://openalex.org/W2129881449","https://openalex.org/W2132589721","https://openalex.org/W2136255822","https://openalex.org/W2137015675","https://openalex.org/W2161575494","https://openalex.org/W2166987747","https://openalex.org/W2786774014","https://openalex.org/W2793859699","https://openalex.org/W2975145196"],"related_works":["https://openalex.org/W2471938860","https://openalex.org/W2811116997","https://openalex.org/W2913352524","https://openalex.org/W2894596463","https://openalex.org/W3105065992","https://openalex.org/W2021820849","https://openalex.org/W2035140644","https://openalex.org/W2034346780","https://openalex.org/W2396426033","https://openalex.org/W4300941830"],"abstract_inverted_index":{"E2":[0,73,91,178,235],"ubiquitin-conjugating":[1],"enzymes":[2,29],"are":[3,117],"crucial":[4,203,224],"mediators":[5],"of":[6,15,27,30,61,72,86,90,102,152,173,221,226],"protein":[7,47],"ubiquitination,":[8],"which":[9,45,116],"strongly":[10],"influence":[11],"the":[12,16,25,31,54,58,62,87,100,103,113,153,170,174,192,196,219,227,230,234],"ultimate":[13],"fate":[14],"target":[17],"substrates.":[18],"Recently,":[19],"it":[20],"has":[21],"been":[22],"shown":[23],"that":[24,147,199],"activity":[26],"several":[28],"ubiquitination":[32],"pathway":[33],"is":[34,202,215],"finely":[35],"tuned":[36],"by":[37,66,119,167],"phosphorylation,":[38],"an":[39,93,143,222],"ubiquitous":[40],"mechanism":[41,64,157],"for":[42,191,206,218],"cellular":[43],"regulation,":[44],"modulates":[46,148],"conformation.":[48],"In":[49,76],"this":[50,200],"contribution,":[51],"we":[52,78],"provide":[53],"first":[55,197],"rationale,":[56],"at":[57],"molecular":[59,132],"level,":[60],"regulatory":[63],"mediated":[65],"casein":[67],"kinase":[68],"2":[69],"(CK2)":[70],"phosphorylation":[71],"Cdc34-like":[74],"enzymes.":[75],"particular,":[77],"identify":[79],"two":[80,107,140],"co-evolving":[81],"signature":[82],"elements":[83,141],"in":[84,96,99,233],"one":[85],"larger":[88],"families":[89],"enzymes:":[92],"acidic":[94,171,193],"insertion":[95],"\u03b24\u03b12":[97,175],"loop":[98,201],"proximity":[101],"catalytic":[104,114,154,236],"cysteine":[105],"and":[106,135,150,169,187],"conserved":[108,164],"key":[109],"serine":[110,165],"residues":[111,172],"within":[112],"domain,":[115],"phosphorylated":[118,166],"CK2.":[120],"Our":[121,182],"investigations,":[122],"using":[123],"yeast":[124],"Cdc34":[125],"as":[126,142],"a":[127,163,185],"model,":[128],"through":[129],"2.5":[130],"\u00b5s":[131],"dynamics":[133],"simulations":[134],"biochemical":[136],"assays,":[137],"define":[138],"these":[139],"important":[144],"phosphorylation-controlled":[145],"switch":[146],"opening":[149],"closing":[151],"cleft.":[155,237],"The":[156],"relies":[158],"on":[159],"electrostatic":[160],"repulsions":[161],"between":[162],"CK2":[168],"loop,":[176,194],"promoting":[177],"ubiquitin":[179,211,228,231],"charging":[180,232],"activity.":[181],"investigation":[183],"identifies":[184],"new":[186],"unexpected":[188],"pivotal":[189],"role":[190],"providing":[195],"evidence":[198],"not":[204],"only":[205],"downstream":[207],"events":[208],"related":[209],"to":[210],"chain":[212],"assembly,":[213],"but":[214],"also":[216],"mandatory":[217],"modulation":[220],"upstream":[223],"step":[225],"pathway:":[229]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":6}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
