{"id":"https://openalex.org/W2002364557","doi":"https://doi.org/10.1371/journal.pcbi.1001131","title":"Detecting Network Communities: An Application to Phylogenetic Analysis","display_name":"Detecting Network Communities: An Application to Phylogenetic Analysis","publication_year":2011,"publication_date":"2011-05-05","ids":{"openalex":"https://openalex.org/W2002364557","doi":"https://doi.org/10.1371/journal.pcbi.1001131","mag":"2002364557","pmid":"https://pubmed.ncbi.nlm.nih.gov/21573202"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1001131","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1001131","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1001131&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1001131&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035232958","display_name":"Roberto F. S. Andrade","orcid":"https://orcid.org/0000-0002-9323-1400"},"institutions":[{"id":"https://openalex.org/I126158947","display_name":"Universidade Federal da Bahia","ror":"https://ror.org/03k3p7647","country_code":"BR","type":"education","lineage":["https://openalex.org/I126158947"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Roberto F. S. Andrade","raw_affiliation_strings":["Institute of Physics, Federal University of Bahia, Campus Universit\u00e1rio de Ondina, Salvador, Bahia, Brazil","Institute of Physics, Federal University of Bahia, Campus#N#                    Universit\u00e1rio de Ondina, Salvador, Bahia, Brazil"],"affiliations":[{"raw_affiliation_string":"Institute of Physics, Federal University of Bahia, Campus Universit\u00e1rio de Ondina, Salvador, Bahia, Brazil","institution_ids":[]},{"raw_affiliation_string":"Institute of Physics, Federal University of Bahia, Campus#N#                    Universit\u00e1rio de Ondina, Salvador, Bahia, Brazil","institution_ids":["https://openalex.org/I126158947"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042844283","display_name":"Ivan Carmo Rocha-Neto","orcid":null},"institutions":[{"id":"https://openalex.org/I4210120266","display_name":"Czech Academy of Sciences, Institute of Mathematics","ror":"https://ror.org/02tv1yf50","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210120266"]},{"id":"https://openalex.org/I126158947","display_name":"Universidade Federal da Bahia","ror":"https://ror.org/03k3p7647","country_code":"BR","type":"education","lineage":["https://openalex.org/I126158947"]}],"countries":["BR","CZ"],"is_corresponding":false,"raw_author_name":"Ivan C. Rocha-Neto","raw_affiliation_strings":["Institute of Mathematics, Federal University of Bahia, Campus","Universit\u00e1rio de Ondina, Salvador, Bahia, Brazil","Institute of Mathematics, Federal University of Bahia, Campus Universit\u00e1rio de Ondina, Salvador, Bahia, Brazil"],"affiliations":[{"raw_affiliation_string":"Institute of Mathematics, Federal University of Bahia, Campus","institution_ids":["https://openalex.org/I126158947","https://openalex.org/I4210120266"]},{"raw_affiliation_string":"Universit\u00e1rio de Ondina, Salvador, Bahia, Brazil","institution_ids":[]},{"raw_affiliation_string":"Institute of Mathematics, Federal University of Bahia, Campus Universit\u00e1rio de Ondina, Salvador, Bahia, Brazil","institution_ids":["https://openalex.org/I126158947"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044404753","display_name":"Leonardo Bacelar Lima Santos","orcid":"https://orcid.org/0000-0002-3129-772X"},"institutions":[{"id":"https://openalex.org/I4210122644","display_name":"Czech Academy of Sciences, Institute of Physics","ror":"https://ror.org/02yhj4v17","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210122644"]},{"id":"https://openalex.org/I80849659","display_name":"National Institute for Space Research","ror":"https://ror.org/04xbn6x09","country_code":"BR","type":"facility","lineage":["https://openalex.org/I4210151455","https://openalex.org/I80849659"]},{"id":"https://openalex.org/I126158947","display_name":"Universidade Federal da Bahia","ror":"https://ror.org/03k3p7647","country_code":"BR","type":"education","lineage":["https://openalex.org/I126158947"]}],"countries":["BR","CZ"],"is_corresponding":false,"raw_author_name":"Leonardo B. L. Santos","raw_affiliation_strings":["Institute of Physics, Federal University of Bahia, Campus","National Institute for Space Research, S\u00e3o Jos\u00e9 dos Campos","S\u00e3o Paulo, Brazil","Universit\u00e1rio de Ondina, Salvador, Bahia, Brazil","Institute of Physics, Federal University of Bahia, Campus#N#                    Universit\u00e1rio de Ondina, Salvador, Bahia, Brazil","National Institute for Space Research, S\u00e3o Jos\u00e9 dos Campos,#N#                    S\u00e3o Paulo, Brazil"],"affiliations":[{"raw_affiliation_string":"Institute of Physics, Federal University of Bahia, Campus","institution_ids":["https://openalex.org/I126158947","https://openalex.org/I4210122644"]},{"raw_affiliation_string":"National Institute for Space Research, S\u00e3o Jos\u00e9 dos Campos","institution_ids":["https://openalex.org/I80849659"]},{"raw_affiliation_string":"S\u00e3o Paulo, Brazil","institution_ids":[]},{"raw_affiliation_string":"Universit\u00e1rio de Ondina, Salvador, Bahia, Brazil","institution_ids":[]},{"raw_affiliation_string":"Institute of Physics, Federal University of Bahia, Campus#N#                    Universit\u00e1rio de Ondina, Salvador, Bahia, Brazil","institution_ids":["https://openalex.org/I126158947"]},{"raw_affiliation_string":"National Institute for Space Research, S\u00e3o Jos\u00e9 dos Campos,#N#                    S\u00e3o Paulo, Brazil","institution_ids":["https://openalex.org/I80849659"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081103359","display_name":"Charles Novaes de Santana","orcid":"https://orcid.org/0000-0003-3988-4360"},"institutions":[{"id":"https://openalex.org/I4210100015","display_name":"Mediterranean Institute for Advanced Studies","ror":"https://ror.org/014nmkx89","country_code":"SI","type":"facility","lineage":["https://openalex.org/I4210100015"]},{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"funder","lineage":["https://openalex.org/I134820265"]}],"countries":["ES","SI"],"is_corresponding":false,"raw_author_name":"Charles N. de Santana","raw_affiliation_strings":["(Islas Baleares), Spain","Mediterranean Institute of Advanced Studies, IMEDEA (CSIC-UIB), Esporles","Mediterranean Institute of Advanced Studies, IMEDEA (CSIC-UIB), Esporles#N#                    (Islas Baleares), Spain"],"affiliations":[{"raw_affiliation_string":"(Islas Baleares), Spain","institution_ids":[]},{"raw_affiliation_string":"Mediterranean Institute of Advanced Studies, IMEDEA (CSIC-UIB), Esporles","institution_ids":["https://openalex.org/I4210100015"]},{"raw_affiliation_string":"Mediterranean Institute of Advanced Studies, IMEDEA (CSIC-UIB), Esporles#N#                    (Islas Baleares), Spain","institution_ids":["https://openalex.org/I134820265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027569655","display_name":"Marcelo V.C. Diniz","orcid":null},"institutions":[{"id":"https://openalex.org/I21606457","display_name":"Universidade Estadual de Feira de Santana","ror":"https://ror.org/04ygk5j35","country_code":"BR","type":"education","lineage":["https://openalex.org/I21606457"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Marcelo V. C. Diniz","raw_affiliation_strings":["Department of Biological Sciences, State University of Feira de Santana","Feira de Santana, Bahia, Brazil","Department of Biological Sciences, State University of Feira de Santana, Feira de Santana, Bahia, Brazil"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, State University of Feira de Santana","institution_ids":["https://openalex.org/I21606457"]},{"raw_affiliation_string":"Feira de Santana, Bahia, Brazil","institution_ids":[]},{"raw_affiliation_string":"Department of Biological Sciences, State University of Feira de Santana, Feira de Santana, Bahia, Brazil","institution_ids":["https://openalex.org/I21606457"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006450127","display_name":"Thierry Petit Lob\u00e3o","orcid":null},"institutions":[{"id":"https://openalex.org/I4210120266","display_name":"Czech Academy of Sciences, Institute of Mathematics","ror":"https://ror.org/02tv1yf50","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210120266"]},{"id":"https://openalex.org/I126158947","display_name":"Universidade Federal da Bahia","ror":"https://ror.org/03k3p7647","country_code":"BR","type":"education","lineage":["https://openalex.org/I126158947"]}],"countries":["BR","CZ"],"is_corresponding":false,"raw_author_name":"Thierry Petit Lob\u00e3o","raw_affiliation_strings":["Institute of Mathematics, Federal University of Bahia, Campus","Universit\u00e1rio de Ondina, Salvador, Bahia, Brazil","Institute of Mathematics, Federal University of Bahia, Campus Universit\u00e1rio de Ondina, Salvador, Bahia, Brazil"],"affiliations":[{"raw_affiliation_string":"Institute of Mathematics, Federal University of Bahia, Campus","institution_ids":["https://openalex.org/I126158947","https://openalex.org/I4210120266"]},{"raw_affiliation_string":"Universit\u00e1rio de Ondina, Salvador, Bahia, Brazil","institution_ids":[]},{"raw_affiliation_string":"Institute of Mathematics, Federal University of Bahia, Campus Universit\u00e1rio de Ondina, Salvador, Bahia, Brazil","institution_ids":["https://openalex.org/I126158947"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088728429","display_name":"Arist\u00f3teles Go\u00e9s\u2010Neto","orcid":"https://orcid.org/0000-0002-7692-6243"},"institutions":[{"id":"https://openalex.org/I21606457","display_name":"Universidade Estadual de Feira de Santana","ror":"https://ror.org/04ygk5j35","country_code":"BR","type":"education","lineage":["https://openalex.org/I21606457"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Arist\u00f3teles Go\u00e9s-Neto","raw_affiliation_strings":["Department of Biological Sciences, State University of Feira de Santana","Feira de Santana, Bahia, Brazil","Department of Biological Sciences, State University of Feira de Santana, Feira de Santana, Bahia, Brazil"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, State University of Feira de Santana","institution_ids":["https://openalex.org/I21606457"]},{"raw_affiliation_string":"Feira de Santana, Bahia, Brazil","institution_ids":[]},{"raw_affiliation_string":"Department of Biological Sciences, State University of Feira de Santana, Feira de Santana, Bahia, Brazil","institution_ids":["https://openalex.org/I21606457"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038857613","display_name":"Suani T. R. Pinho","orcid":"https://orcid.org/0000-0003-1404-3485"},"institutions":[{"id":"https://openalex.org/I4210122644","display_name":"Czech Academy of Sciences, Institute of Physics","ror":"https://ror.org/02yhj4v17","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210122644"]},{"id":"https://openalex.org/I126158947","display_name":"Universidade Federal da Bahia","ror":"https://ror.org/03k3p7647","country_code":"BR","type":"education","lineage":["https://openalex.org/I126158947"]}],"countries":["BR","CZ"],"is_corresponding":false,"raw_author_name":"Suani T. R. Pinho","raw_affiliation_strings":["Institute of Physics, Federal University of Bahia, Campus","Universit\u00e1rio de Ondina, Salvador, Bahia, Brazil","Institute of Physics, Federal University of Bahia, Campus#N#                    Universit\u00e1rio de Ondina, Salvador, Bahia, Brazil"],"affiliations":[{"raw_affiliation_string":"Institute of Physics, Federal University of Bahia, Campus","institution_ids":["https://openalex.org/I126158947","https://openalex.org/I4210122644"]},{"raw_affiliation_string":"Universit\u00e1rio de Ondina, Salvador, Bahia, Brazil","institution_ids":[]},{"raw_affiliation_string":"Institute of Physics, Federal University of Bahia, Campus#N#                    Universit\u00e1rio de Ondina, Salvador, Bahia, Brazil","institution_ids":["https://openalex.org/I126158947"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034747577","display_name":"Charbel Ni\u00f1o El-Hani","orcid":"https://orcid.org/0000-0002-2308-3983"},"institutions":[{"id":"https://openalex.org/I126158947","display_name":"Universidade Federal da Bahia","ror":"https://ror.org/03k3p7647","country_code":"BR","type":"education","lineage":["https://openalex.org/I126158947"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Charbel N. El-Hani","raw_affiliation_strings":["Institute of Biology, Federal University of Bahia, Campus","Universit\u00e1rio de Ondina, Salvador, Bahia, Brazil","Institute of Biology, Federal University of Bahia, Campus Universit\u00e1rio de Ondina, Salvador, Bahia, Brazil"],"affiliations":[{"raw_affiliation_string":"Institute of Biology, Federal University of Bahia, Campus","institution_ids":["https://openalex.org/I126158947"]},{"raw_affiliation_string":"Universit\u00e1rio de Ondina, Salvador, Bahia, Brazil","institution_ids":[]},{"raw_affiliation_string":"Institute of Biology, Federal University of Bahia, Campus Universit\u00e1rio de Ondina, Salvador, Bahia, Brazil","institution_ids":["https://openalex.org/I126158947"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5034747577"],"corresponding_institution_ids":["https://openalex.org/I126158947"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.667,"has_fulltext":true,"cited_by_count":44,"citation_normalized_percentile":{"value":0.68010296,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"7","issue":"5","first_page":"e1001131","last_page":"e1001131"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9861999750137329,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11354","display_name":"Evolution and Paleontology Studies","score":0.9302999973297119,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.6584380865097046},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.6336653232574463},{"id":"https://openalex.org/keywords/distance-matrices-in-phylogeny","display_name":"Distance matrices in phylogeny","score":0.6193224191665649},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.6014559268951416},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5922461152076721},{"id":"https://openalex.org/keywords/consistency","display_name":"Consistency (knowledge bases)","score":0.5777059197425842},{"id":"https://openalex.org/keywords/network-analysis","display_name":"Network analysis","score":0.5676618218421936},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5056161880493164},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4876953065395355},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.48340287804603577},{"id":"https://openalex.org/keywords/phylum","display_name":"Phylum","score":0.46618932485580444},{"id":"https://openalex.org/keywords/bayesian-network","display_name":"Bayesian network","score":0.4528934359550476},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.4104154109954834},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.41029033064842224},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3928307890892029},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29243209958076477},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2508975565433502},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13160660862922668},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11924326419830322}],"concepts":[{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.6584380865097046},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.6336653232574463},{"id":"https://openalex.org/C5349765","wikidata":"https://www.wikidata.org/wiki/Q5282866","display_name":"Distance matrices in phylogeny","level":2,"score":0.6193224191665649},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.6014559268951416},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5922461152076721},{"id":"https://openalex.org/C2776436953","wikidata":"https://www.wikidata.org/wiki/Q5163215","display_name":"Consistency (knowledge bases)","level":2,"score":0.5777059197425842},{"id":"https://openalex.org/C32946077","wikidata":"https://www.wikidata.org/wiki/Q618079","display_name":"Network analysis","level":2,"score":0.5676618218421936},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5056161880493164},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4876953065395355},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.48340287804603577},{"id":"https://openalex.org/C91066513","wikidata":"https://www.wikidata.org/wiki/Q38348","display_name":"Phylum","level":3,"score":0.46618932485580444},{"id":"https://openalex.org/C33724603","wikidata":"https://www.wikidata.org/wiki/Q812540","display_name":"Bayesian network","level":2,"score":0.4528934359550476},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.4104154109954834},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.41029033064842224},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3928307890892029},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29243209958076477},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2508975565433502},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13160660862922668},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11924326419830322},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002686","descriptor_name":"Chitin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002686","descriptor_name":"Chitin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002686","descriptor_name":"Chitin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002687","descriptor_name":"Chitin Synthase","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002687","descriptor_name":"Chitin Synthase","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002687","descriptor_name":"Chitin Synthase","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D005057","descriptor_name":"Eukaryotic Cells","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D005057","descriptor_name":"Eukaryotic Cells","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D005057","descriptor_name":"Eukaryotic Cells","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D005057","descriptor_name":"Eukaryotic Cells","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D005057","descriptor_name":"Eukaryotic Cells","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D005057","descriptor_name":"Eukaryotic Cells","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018407","descriptor_name":"Bacterial Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018407","descriptor_name":"Bacterial Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018407","descriptor_name":"Bacterial Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":11,"locations":[{"id":"doi:10.1371/journal.pcbi.1001131","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1001131","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1001131&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:21573202","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21573202","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:192.168.11:11:ri/5419","is_oa":true,"landing_page_url":"http://www.repositorio.ufba.br/ri/handle/ri/5419","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"DOI: 10.1371/journal.pcbi.1001131","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:agregador.ibict.br.RI_UFBA:oai:192.168.11:11:ri/5419","is_oa":true,"landing_page_url":"https://www.rcaap.pt/detail.jsp?id=oai:agregador.ibict.br.RI_UFBA:oai:192.168.11:11:ri/5419","pdf_url":null,"source":{"id":"https://openalex.org/S4306402433","display_name":"Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.973.1370","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.973.1370","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://europepmc.org/backend/ptpmcrender.fcgi?accid%3DPMC3088654%26blobtype%3Dpdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.983.9711","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.983.9711","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://digital.csic.es/bitstream/10261/46704/1/journal.pcbi.1001131.pdf","raw_type":"text"},{"id":"pmh:oai:digital.csic.es:10261/46704","is_oa":false,"landing_page_url":"http://hdl.handle.net/10261/46704","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"art\u00edculo"},{"id":"pmh:oai:doaj.org/article:d5a3ef27cf484961866388fc834d7c1c","is_oa":true,"landing_page_url":"https://doaj.org/article/d5a3ef27cf484961866388fc834d7c1c","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 7, Iss 5, p e1001131 (2011)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/137006","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Detecting_Network_Communities_An_Application_to_Phylogenetic_Analysis/137006","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:pubmedcentral.nih.gov:3088654","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3088654","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:urlib.net:dpi.inpe.br/plutao/2011/06.11.02.31.50-0","is_oa":true,"landing_page_url":"http://urlib.net/J8LNKAN8RW/39RQ99C","pdf_url":null,"source":{"id":"https://openalex.org/S4377196298","display_name":"Biblioteca Digital da Mem\u00f3ria Cient\u00edfica do INPE (National Institute for Space Research)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I80849659","host_organization_name":"Instituto Nacional de Pesquisas Espaciais","host_organization_lineage":["https://openalex.org/I80849659"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1001131","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1001131","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1001131&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1367982845","display_name":null,"funder_award_id":"305176/2009-9","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G6438124864","display_name":null,"funder_award_id":"301259/2010-0","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G6799555415","display_name":null,"funder_award_id":"1/2007","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G7518588700","display_name":null,"funder_award_id":"FAPESB","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"}],"funders":[{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320323681","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado da Bahia","ror":"https://ror.org/0473khm44"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2002364557.pdf","grobid_xml":"https://content.openalex.org/works/W2002364557.grobid-xml"},"referenced_works_count":58,"referenced_works":["https://openalex.org/W143174683","https://openalex.org/W1502432690","https://openalex.org/W1510029899","https://openalex.org/W1530751369","https://openalex.org/W1538462311","https://openalex.org/W1600348603","https://openalex.org/W1632705170","https://openalex.org/W1990416054","https://openalex.org/W1993109819","https://openalex.org/W2002850151","https://openalex.org/W2006475796","https://openalex.org/W2008856488","https://openalex.org/W2010371279","https://openalex.org/W2015137582","https://openalex.org/W2019212021","https://openalex.org/W2022203648","https://openalex.org/W2022758681","https://openalex.org/W2029173860","https://openalex.org/W2042622609","https://openalex.org/W2044789562","https://openalex.org/W2045690122","https://openalex.org/W2050721857","https://openalex.org/W2070722739","https://openalex.org/W2072509066","https://openalex.org/W2084619201","https://openalex.org/W2088890614","https://openalex.org/W2089458547","https://openalex.org/W2094825978","https://openalex.org/W2095293504","https://openalex.org/W2120043163","https://openalex.org/W2121564430","https://openalex.org/W2124166542","https://openalex.org/W2124637492","https://openalex.org/W2127048411","https://openalex.org/W2131596454","https://openalex.org/W2140827816","https://openalex.org/W2146058063","https://openalex.org/W2146883006","https://openalex.org/W2148274789","https://openalex.org/W2148606196","https://openalex.org/W2150749732","https://openalex.org/W2153624566","https://openalex.org/W2154370832","https://openalex.org/W2157076884","https://openalex.org/W2158714788","https://openalex.org/W2163480486","https://openalex.org/W2164727176","https://openalex.org/W2172245835","https://openalex.org/W2903080299","https://openalex.org/W3102641634","https://openalex.org/W3123255541","https://openalex.org/W4229688471","https://openalex.org/W4231133063","https://openalex.org/W4233815609","https://openalex.org/W4245051455","https://openalex.org/W4285719527","https://openalex.org/W6821812251","https://openalex.org/W7066511990"],"related_works":["https://openalex.org/W2155492529","https://openalex.org/W4252504573","https://openalex.org/W4385510321","https://openalex.org/W15348386","https://openalex.org/W2314128295","https://openalex.org/W1509942269","https://openalex.org/W4287026692","https://openalex.org/W2077895977","https://openalex.org/W2609388058","https://openalex.org/W2995291573"],"abstract_inverted_index":{"This":[0],"paper":[1],"proposes":[2],"a":[3,153,274],"new":[4],"method":[5,238,269],"to":[6,17,25,47,99,104,152,157,173,190],"identify":[7],"communities":[8],"in":[9,120,141,165,201,209],"generally":[10],"weighted":[11,282],"complex":[12],"networks":[13,86],"and":[14,169,239,249],"apply":[15],"it":[16],"phylogenetic":[18,288],"analysis.":[19,289],"In":[20],"this":[21],"case,":[22],"weights":[23],"correspond":[24],"the":[26,41,63,72,76,79,90,100,106,116,121,136,158,166,183,192,202,233,236,240,254,267],"similarity":[27,68],"indexes":[28],"among":[29],"protein":[30,67],"sequences,":[31],"which":[32,105,284],"can":[33,44,112,270],"be":[34,45,113,271],"used":[35,119,262,272],"for":[36,162,177,198,277,287],"network":[37,42,91,122],"construction":[38],"so":[39],"that":[40,206,253,266],"structure":[43],"analyzed":[46],"recover":[48],"phylogenetically":[49],"useful":[50,286],"information":[51,111,280],"from":[52,214,223,281],"its":[53],"properties.":[54],"The":[55,83],"analyses":[56],"discussed":[57],"here":[58],"are":[59,87,207],"mainly":[60],"based":[61,244],"on":[62,225,245],"modular":[64],"character":[65],"of":[66,78,102,175,235,242],"networks,":[69,283],"explored":[70],"through":[71],"Newman-Girvan":[73],"algorithm,":[74],"with":[75],"help":[77],"neighborhood":[80],"matrix":[81],".":[82],"most":[84],"relevant":[85],"found":[88],"when":[89,180],"topology":[92],"changes":[93],"abruptly":[94],"revealing":[95],"distinct":[96],"modules":[97],"related":[98],"sets":[101],"organisms":[103,213],"proteins":[107],"belong.":[108],"Sound":[109],"biological":[110,126],"retrieved":[114],"by":[115,132],"computational":[117],"routines":[118],"approach,":[123],"without":[124],"using":[125],"assumptions":[127],"other":[128],"than":[129,211],"those":[130],"incorporated":[131],"BLAST.":[133],"Usually,":[134],"all":[135],"main":[137],"bacterial":[138,146],"phyla":[139],"and,":[140],"some":[142,145],"cases,":[143],"also":[144],"classes":[147],"corresponded":[148],"totally":[149],"(100%)":[150],"or":[151],"great":[154],"extent":[155],"(>70%)":[156],"modules.":[159],"We":[160,264],"checked":[161],"internal":[163],"consistency":[164],"obtained":[167],"results,":[168],"we":[170,195],"scored":[171],"close":[172],"84%":[174],"matches":[176],"community":[178],"pertinence":[179],"comparisons":[181],"between":[182,232],"results":[184,241],"were":[185],"performed.":[186],"To":[187],"illustrate":[188],"how":[189],"use":[191],"network-based":[193,237,268],"method,":[194],"employed":[196],"data":[197,217],"enzymes":[199],"involved":[200],"chitin":[203],"metabolic":[204],"pathway":[205],"present":[208],"more":[210],"100":[212],"an":[215],"original":[216],"set":[218],"containing":[219],"1,695":[220],"organisms,":[221],"downloaded":[222],"GenBank":[224],"May":[226],"19,":[227],"2007.":[228],"A":[229],"preliminary":[230],"comparison":[231],"outcomes":[234],"methods":[243],"Bayesian,":[246],"distance,":[247],"likelihood,":[248],"parsimony":[250],"criteria":[251],"suggests":[252],"former":[255],"is":[256,285],"as":[257,259,273],"reliable":[258],"these":[260],"commonly":[261],"methods.":[263],"conclude":[265],"powerful":[275],"tool":[276],"retrieving":[278],"modularity":[279]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
