{"id":"https://openalex.org/W2038806095","doi":"https://doi.org/10.1371/journal.pcbi.1001065","title":"Digital Atlasing and Standardization in the Mouse Brain","display_name":"Digital Atlasing and Standardization in the Mouse Brain","publication_year":2011,"publication_date":"2011-02-03","ids":{"openalex":"https://openalex.org/W2038806095","doi":"https://doi.org/10.1371/journal.pcbi.1001065","mag":"2038806095","pmid":"https://pubmed.ncbi.nlm.nih.gov/21304938"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1001065","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1001065","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1001065&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1001065&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090586758","display_name":"Michael Hawrylycz","orcid":"https://orcid.org/0000-0002-5741-8024"},"institutions":[{"id":"https://openalex.org/I1314596251","display_name":"Allen Institute for Brain Science","ror":"https://ror.org/00dcv1019","country_code":"US","type":"facility","lineage":["https://openalex.org/I1314596251","https://openalex.org/I4210140341"]},{"id":"https://openalex.org/I4210140341","display_name":"Allen Institute","ror":"https://ror.org/03cpe7c52","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210140341"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Michael Hawrylycz","raw_affiliation_strings":["Allen Institute for Brain Science, Seattle, Washington, United States of America. mikeh@alleninstitute.org","Allen Institute for Brain Science, Seattle, Washington, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Allen Institute for Brain Science, Seattle, Washington, United States of America. mikeh@alleninstitute.org","institution_ids":["https://openalex.org/I4210140341","https://openalex.org/I1314596251"]},{"raw_affiliation_string":"Allen Institute for Brain Science, Seattle, Washington, United States of America","institution_ids":["https://openalex.org/I4210140341","https://openalex.org/I1314596251"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057893272","display_name":"Richard Baldock","orcid":"https://orcid.org/0000-0003-0332-6877"},"institutions":[{"id":"https://openalex.org/I4210158898","display_name":"Institute of Genetics and Cancer","ror":"https://ror.org/05hygey35","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210087105","https://openalex.org/I4210158898","https://openalex.org/I90344618","https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Richard A. Baldock","raw_affiliation_strings":["MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, Edinburgh, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, Edinburgh, United Kingdom","institution_ids":["https://openalex.org/I4210158898"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079735260","display_name":"Albert Burger","orcid":"https://orcid.org/0000-0002-5492-8635"},"institutions":[{"id":"https://openalex.org/I32062511","display_name":"Heriot-Watt University","ror":"https://ror.org/04mghma93","country_code":"GB","type":"education","lineage":["https://openalex.org/I32062511"]},{"id":"https://openalex.org/I4210158898","display_name":"Institute of Genetics and Cancer","ror":"https://ror.org/05hygey35","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210087105","https://openalex.org/I4210158898","https://openalex.org/I90344618","https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Albert Burger","raw_affiliation_strings":["MRC Human Genetics Unit, Edinburgh and Heriot-Watt University, Edinburgh, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC Human Genetics Unit, Edinburgh and Heriot-Watt University, Edinburgh, United Kingdom","institution_ids":["https://openalex.org/I4210158898","https://openalex.org/I32062511"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020494202","display_name":"Tsutomu Hashikawa","orcid":null},"institutions":[{"id":"https://openalex.org/I2800939219","display_name":"RIKEN Center for Brain Science","ror":"https://ror.org/04j1n1c04","country_code":"JP","type":"facility","lineage":["https://openalex.org/I2800939219","https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tsutomu Hashikawa","raw_affiliation_strings":["RIKEN Brain Science Institute, Saitama, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Brain Science Institute, Saitama, Japan","institution_ids":["https://openalex.org/I2800939219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087959553","display_name":"G. Allan Johnson","orcid":"https://orcid.org/0000-0002-7606-5447"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G. Allan Johnson","raw_affiliation_strings":["Duke University, Center for In Vivo Microscopy, Durham, North Carolina, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Duke University, Center for In Vivo Microscopy, Durham, North Carolina, United States of America","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061037631","display_name":"Maryann E. Martone","orcid":"https://orcid.org/0000-0002-8406-3871"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maryann Martone","raw_affiliation_strings":["National Center for Microscopy and Imaging Research (NCMIR), University of California, San Diego, La Jolla, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Microscopy and Imaging Research (NCMIR), University of California, San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074982934","display_name":"Lydia Ng","orcid":"https://orcid.org/0000-0002-7499-3514"},"institutions":[{"id":"https://openalex.org/I1314596251","display_name":"Allen Institute for Brain Science","ror":"https://ror.org/00dcv1019","country_code":"US","type":"facility","lineage":["https://openalex.org/I1314596251","https://openalex.org/I4210140341"]},{"id":"https://openalex.org/I4210140341","display_name":"Allen Institute","ror":"https://ror.org/03cpe7c52","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210140341"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lydia Ng","raw_affiliation_strings":["Allen Institute for Brain Science, Seattle, Washington, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Allen Institute for Brain Science, Seattle, Washington, United States of America","institution_ids":["https://openalex.org/I4210140341","https://openalex.org/I1314596251"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103699217","display_name":"Chris Lau","orcid":null},"institutions":[{"id":"https://openalex.org/I1314596251","display_name":"Allen Institute for Brain Science","ror":"https://ror.org/00dcv1019","country_code":"US","type":"facility","lineage":["https://openalex.org/I1314596251","https://openalex.org/I4210140341"]},{"id":"https://openalex.org/I4210140341","display_name":"Allen Institute","ror":"https://ror.org/03cpe7c52","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210140341"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chris Lau","raw_affiliation_strings":["Allen Institute for Brain Science, Seattle, Washington, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Allen Institute for Brain Science, Seattle, Washington, United States of America","institution_ids":["https://openalex.org/I4210140341","https://openalex.org/I1314596251"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025137413","display_name":"Stephen D. Larsen","orcid":null},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephen D. Larsen","raw_affiliation_strings":["National Center for Microscopy and Imaging Research (NCMIR), University of California, San Diego, La Jolla, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Microscopy and Imaging Research (NCMIR), University of California, San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108094764","display_name":"Jonathan Nissanov","orcid":null},"institutions":[{"id":"https://openalex.org/I62657347","display_name":"Touro University Nevada","ror":"https://ror.org/05t9mkx39","country_code":"US","type":"education","lineage":["https://openalex.org/I62657347"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jonathan Nissanov","raw_affiliation_strings":["Department of Basic Sciences, Touro University Nevada, College of Osteopathic Medicine, Henderson, Nevada, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Basic Sciences, Touro University Nevada, College of Osteopathic Medicine, Henderson, Nevada, United States of America","institution_ids":["https://openalex.org/I62657347"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056031438","display_name":"Luis Puelles","orcid":"https://orcid.org/0000-0002-9541-7073"},"institutions":[{"id":"https://openalex.org/I4210115082","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red","ror":"https://ror.org/02g87qh62","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210115082","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I80180929","display_name":"Universidad de Murcia","ror":"https://ror.org/03p3aeb86","country_code":"ES","type":"education","lineage":["https://openalex.org/I80180929"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Luis Puelles","raw_affiliation_strings":["CIBER en Enfermedades Raras 736 and Faculty of Medicine, University of Murcia, Murcia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIBER en Enfermedades Raras 736 and Faculty of Medicine, University of Murcia, Murcia, Spain","institution_ids":["https://openalex.org/I80180929","https://openalex.org/I4210115082"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074987111","display_name":"Seth Ruffins","orcid":null},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Seth Ruffins","raw_affiliation_strings":["Laboratory of Neuro Imaging (LONI), University of California, Los Angeles, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Neuro Imaging (LONI), University of California, Los Angeles, California, United States of America","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022631255","display_name":"Fons J. Verbeek","orcid":"https://orcid.org/0000-0003-2445-8158"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Fons Verbeek","raw_affiliation_strings":["Leiden Institute of Advanced Computer Science, Leiden University, Leiden, The Netherlands","Leiden Institute of Advanced Computer Science, Leiden University,Leiden,The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leiden Institute of Advanced Computer Science, Leiden University, Leiden, The Netherlands","institution_ids":["https://openalex.org/I121797337"]},{"raw_affiliation_string":"Leiden Institute of Advanced Computer Science, Leiden University,Leiden,The Netherlands","institution_ids":["https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108466236","display_name":"Ilya Zaslavsky","orcid":null},"institutions":[{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ilya Zaslavsky","raw_affiliation_strings":["San Diego Supercomputer Center, University of California San Diego, San Diego, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"San Diego Supercomputer Center, University of California San Diego, San Diego, California, United States of America","institution_ids":["https://openalex.org/I181653535","https://openalex.org/I36258959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041076559","display_name":"Jyl Boline","orcid":"https://orcid.org/0000-0001-5232-8364"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Jyl Boline","raw_affiliation_strings":["Informed Minds, Wilton Manors, Florida, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Informed Minds, Wilton Manors, Florida, United States of America","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":15,"corresponding_author_ids":["https://openalex.org/A5041076559","https://openalex.org/A5090586758"],"corresponding_institution_ids":["https://openalex.org/I1314596251","https://openalex.org/I4210140341"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":18.6811,"has_fulltext":true,"cited_by_count":111,"citation_normalized_percentile":{"value":0.99212865,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"7","issue":"2","first_page":"e1001065","last_page":"e1001065"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/brain-atlas","display_name":"Brain atlas","score":0.7501509785652161},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6968382596969604},{"id":"https://openalex.org/keywords/standardization","display_name":"Standardization","score":0.6477372646331787},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5836244821548462},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4613288938999176},{"id":"https://openalex.org/keywords/modalities","display_name":"Modalities","score":0.4588713049888611},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4277571141719818},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.40493205189704895},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.38458096981048584}],"concepts":[{"id":"https://openalex.org/C2780972224","wikidata":"https://www.wikidata.org/wiki/Q17047956","display_name":"Brain atlas","level":2,"score":0.7501509785652161},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6968382596969604},{"id":"https://openalex.org/C188087704","wikidata":"https://www.wikidata.org/wiki/Q369577","display_name":"Standardization","level":2,"score":0.6477372646331787},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5836244821548462},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4613288938999176},{"id":"https://openalex.org/C2779903281","wikidata":"https://www.wikidata.org/wiki/Q6888026","display_name":"Modalities","level":2,"score":0.4588713049888611},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4277571141719818},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.40493205189704895},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.38458096981048584},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C36289849","wikidata":"https://www.wikidata.org/wiki/Q34749","display_name":"Social science","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000716","descriptor_name":"Anatomy, Artistic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D000716","descriptor_name":"Anatomy, Artistic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D000716","descriptor_name":"Anatomy, Artistic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D000716","descriptor_name":"Anatomy, Artistic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D000716","descriptor_name":"Anatomy, Artistic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D000716","descriptor_name":"Anatomy, Artistic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D000716","descriptor_name":"Anatomy, Artistic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D000716","descriptor_name":"Anatomy, Artistic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D000716","descriptor_name":"Anatomy, Artistic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D000716","descriptor_name":"Anatomy, Artistic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001271","descriptor_name":"Atlases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001271","descriptor_name":"Atlases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001271","descriptor_name":"Atlases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001271","descriptor_name":"Atlases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001271","descriptor_name":"Atlases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008810","descriptor_name":"Mice, Inbred C57BL","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008810","descriptor_name":"Mice, Inbred C57BL","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008810","descriptor_name":"Mice, Inbred C57BL","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008810","descriptor_name":"Mice, Inbred C57BL","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008810","descriptor_name":"Mice, Inbred C57BL","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008953","descriptor_name":"Models, Anatomic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008953","descriptor_name":"Models, Anatomic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008953","descriptor_name":"Models, Anatomic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008953","descriptor_name":"Models, Anatomic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008953","descriptor_name":"Models, Anatomic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1371/journal.pcbi.1001065","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1001065","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1001065&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:21304938","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21304938","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:pure.ed.ac.uk:openaire/0d80cf1d-f9ec-4306-8a5a-a70234fc17c9","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/en/publications/0d80cf1d-f9ec-4306-8a5a-a70234fc17c9","pdf_url":null,"source":{"id":"https://openalex.org/S4406922455","display_name":"Edinburgh Research Explorer","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Hawrylycz, M, Baldock, R A, Burger, A, Hashikawa, T, Johnson, G A, Martone, M, Ng, L, Lau, C, Larson, S D, Larsen, S D, Nissanov, J, Puelles, L, Ruffins, S, Verbeek, F, Zaslavsky, I & Boline, J 2011, 'Digital atlasing and standardization in the mouse brain', PLoS Computational Biology, vol. 7, no. 2, pp. e1001065. https://doi.org/10.1371/journal.pcbi.1001065","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:doaj.org/article:bb5a4e9890844dacbf95c58df7ad10c1","is_oa":true,"landing_page_url":"https://doaj.org/article/bb5a4e9890844dacbf95c58df7ad10c1","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 7, Iss 2, p e1001065 (2011)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3033370","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3033370","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:pure.ed.ac.uk:publications/0d80cf1d-f9ec-4306-8a5a-a70234fc17c9","is_oa":true,"landing_page_url":"http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001065","pdf_url":null,"source":{"id":"https://openalex.org/S4406922455","display_name":"Edinburgh Research Explorer","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:scholarlypublications.universiteitleiden.nl:item_3638868","is_oa":true,"landing_page_url":"https://hdl.handle.net/1887/3638868","pdf_url":null,"source":{"id":"https://openalex.org/S4306400850","display_name":"Leiden Repository (Leiden University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I121797337","host_organization_name":"Leiden University","host_organization_lineage":["https://openalex.org/I121797337"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology","raw_type":"Article / Letter to editor"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1001065","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1001065","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1001065&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2038806095.pdf","grobid_xml":"https://content.openalex.org/works/W2038806095.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W1844177","https://openalex.org/W7508719","https://openalex.org/W249845531","https://openalex.org/W1520320129","https://openalex.org/W1522048223","https://openalex.org/W1726261545","https://openalex.org/W1969118200","https://openalex.org/W1970085768","https://openalex.org/W1974519458","https://openalex.org/W1974717034","https://openalex.org/W1987402280","https://openalex.org/W1995124264","https://openalex.org/W2003572485","https://openalex.org/W2004004650","https://openalex.org/W2013171582","https://openalex.org/W2014148850","https://openalex.org/W2018227909","https://openalex.org/W2025663766","https://openalex.org/W2026527241","https://openalex.org/W2037582484","https://openalex.org/W2039439604","https://openalex.org/W2040107985","https://openalex.org/W2046275012","https://openalex.org/W2048076599","https://openalex.org/W2056567746","https://openalex.org/W2068863154","https://openalex.org/W2081534285","https://openalex.org/W2083099567","https://openalex.org/W2093788495","https://openalex.org/W2105490800","https://openalex.org/W2105612509","https://openalex.org/W2120659167","https://openalex.org/W2123491442","https://openalex.org/W2127695105","https://openalex.org/W2133239859","https://openalex.org/W2138173706","https://openalex.org/W2143947644","https://openalex.org/W2146693559","https://openalex.org/W2156426667","https://openalex.org/W2163383667","https://openalex.org/W2163815564","https://openalex.org/W2171191802","https://openalex.org/W4251310312","https://openalex.org/W6631231365","https://openalex.org/W7033452965"],"related_works":["https://openalex.org/W2378767206","https://openalex.org/W1540871478","https://openalex.org/W328308450","https://openalex.org/W282641168","https://openalex.org/W2376963063","https://openalex.org/W2066396794","https://openalex.org/W2366734808","https://openalex.org/W2002476357","https://openalex.org/W2391444248","https://openalex.org/W2390716080"],"abstract_inverted_index":{"Digital":[0],"brain":[1,51,140,270],"atlases":[2,52,73,92,109,141],"are":[3,222],"used":[4],"in":[5,137,186,227],"neuroscience":[6],"to":[7,72,158,178,184,207,275],"characterize":[8],"the":[9,54,135,144,147,159,220,231,255],"spatial":[10],"organization":[11],"of":[12,42,53,113,115,121,134,146,149,161,174,216,233,237,249],"neuronal":[13],"structures":[14,114],"[1]\u2013[3],":[15],"for":[16,28,267],"planning":[17],"and":[18,24,47,65,85,96,165,181,211,241,278],"guidance":[19],"during":[20],"neurosurgery":[21],"[4],":[22],"[5],":[23],"as":[25,33,101,103,244],"a":[26,116,150,187,234,262],"reference":[27,238],"interpreting":[29],"other":[30,67],"modalities":[31],"such":[32],"gene":[34],"expression":[35],"or":[36,118,126,219,247],"proteomic":[37],"data":[38,162,210,221],"[6]\u2013[9].":[39],"The":[40],"field":[41],"digital":[43,91,139,264],"atlasing":[44,265],"is":[45,142,154,177,199,230,252],"extensive,":[46],"includes":[48],"high":[49],"quality":[50],"mouse":[55,269],"[10],":[56,83],"rat":[57],"[11],":[58,77,89],"rhesus":[59],"macaque":[60],"[12],":[61],"human":[62],"[13],":[63],"[14],":[64],"several":[66],"model":[68],"organisms.":[69],"In":[70,257],"addition":[71],"based":[74,193],"on":[75],"histology,":[76],"[15],":[78],"[16],":[79],"magnetic":[80],"resonance":[81],"imaging":[82],"[17],":[84],"positron":[86],"emission":[87],"tomography":[88],"modern":[90],"often":[93,155],"use":[94],"probabilistic":[95],"multimodal":[97],"techniques":[98],"[18],":[99,131],"[19],":[100],"well":[102],"sophisticated":[104],"visualization":[105,112],"software":[106],"[20],":[107],"[21].\r\n\r\nWhether":[108],"involve":[110],"detailed":[111],"single":[117,151],"small":[119],"group":[120],"specimens":[122,240],"[6],":[123],"[22],":[124],"[23]":[125],"averages":[127],"over":[128],"larger":[129],"populations":[130],"[24],":[132],"much":[133],"work":[136,185],"developing":[138],"from":[143,280],"perspective":[145],"user":[148],"resource.":[152],"This":[153,197],"due":[156],"largely":[157],"challenges":[160],"generation,":[163],"maintenance,":[164],"resources":[166,183,242],"management":[167],"[25],":[168],"[26].":[169],"A":[170],"more":[171],"recent":[172],"goal":[173],"many":[175],"neuroscientists":[176],"connect":[179],"multiple":[180,281],"diverse":[182],"collaborative":[188,263],"manner":[189],"using":[190],"an":[191],"atlas":[192],"framework":[194,266],"[2],":[195],"[19].":[196],"vision":[198],"appealing":[200],"as,":[201],"ideally,":[202],"researchers":[203],"would":[204],"be":[205],"able":[206],"share":[208],"their":[209],"analyses":[212,279],"with":[213],"others,":[214],"regardless":[215],"where":[217],"they":[218],"located.":[223],"An":[224],"important":[225],"step":[226],"this":[228,258],"direction":[229],"specification":[232],"common":[235],"frame":[236],"across":[239],"(either":[243],"coordinate,":[245],"ontology,":[246],"region":[248],"interest)":[250],"that":[251,272],"adopted":[253],"by":[254],"community.":[256],"perspective,":[259],"we":[260],"propose":[261],"coordinating":[268],"research":[271],"allows":[273],"access":[274],"data,":[276],"tools,":[277],"sources.":[282]},"counts_by_year":[{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":14},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":10},{"year":2013,"cited_by_count":15},{"year":2012,"cited_by_count":17}],"updated_date":"2026-05-04T08:30:34.212998","created_date":"2025-10-10T00:00:00"}
