{"id":"https://openalex.org/W2018737226","doi":"https://doi.org/10.1371/journal.pcbi.1001055","title":"Benchmarking Ontologies: Bigger or Better?","display_name":"Benchmarking Ontologies: Bigger or Better?","publication_year":2011,"publication_date":"2011-01-13","ids":{"openalex":"https://openalex.org/W2018737226","doi":"https://doi.org/10.1371/journal.pcbi.1001055","mag":"2018737226","pmid":"https://pubmed.ncbi.nlm.nih.gov/21249231"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1001055","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1001055","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1001055&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1001055&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066989029","display_name":"Lixia Yao","orcid":"https://orcid.org/0000-0002-5187-6120"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lixia Yao","raw_affiliation_strings":["Department of Biomedical Informatics, Columbia University, New York, New York, USA","Institute for Genomics and Systems Biology, University of Chicago, Chicago, Illinois, United States of America","Department of Biomedical Informatics, Columbia University, New York, New York, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Columbia University, New York, New York, USA","institution_ids":["https://openalex.org/I78577930"]},{"raw_affiliation_string":"Institute for Genomics and Systems Biology, University of Chicago, Chicago, Illinois, United States of America","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Department of Biomedical Informatics, Columbia University, New York, New York, United States of America","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061024321","display_name":"Anna Divoli","orcid":"https://orcid.org/0000-0003-2324-3542"},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anna Divoli","raw_affiliation_strings":["Department of Medicine, University of Chicago, Chicago, Illinois, United States of America","Institute for Genomics and Systems Biology, University of Chicago, Chicago, Illinois, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, University of Chicago, Chicago, Illinois, United States of America","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Institute for Genomics and Systems Biology, University of Chicago, Chicago, Illinois, United States of America","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020113470","display_name":"Ilya Mayzus","orcid":null},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ilya Mayzus","raw_affiliation_strings":["Department of Medicine, University of Chicago, Chicago, Illinois, United States of America","Institute for Genomics and Systems Biology, University of Chicago, Chicago, Illinois, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, University of Chicago, Chicago, Illinois, United States of America","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Institute for Genomics and Systems Biology, University of Chicago, Chicago, Illinois, United States of America","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076633756","display_name":"James A. Evans","orcid":"https://orcid.org/0000-0001-9838-0707"},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James A. Evans","raw_affiliation_strings":["Computation Institute, University of Chicago, Chicago, Illinois, United States of America","Sociology Department, University of Chicago, Chicago, Illinois, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, Illinois, United States of America","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Sociology Department, University of Chicago, Chicago, Illinois, United States of America","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004739989","display_name":"Andrey Rzhetsky","orcid":"https://orcid.org/0000-0001-6959-7405"},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Andrey Rzhetsky","raw_affiliation_strings":["Computation Institute, University of Chicago, Chicago, Illinois, United States of America","Department of Human Genetics, University of Chicago, Chicago, Illinois, United States of America","Department of Medicine, University of Chicago, Chicago, Illinois, United States of America","Institute for Genomics and Systems Biology, University of Chicago, Chicago, Illinois, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, Illinois, United States of America","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Department of Human Genetics, University of Chicago, Chicago, Illinois, United States of America","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Department of Medicine, University of Chicago, Chicago, Illinois, United States of America","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Institute for Genomics and Systems Biology, University of Chicago, Chicago, Illinois, United States of America","institution_ids":["https://openalex.org/I40347166"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5004739989"],"corresponding_institution_ids":["https://openalex.org/I40347166"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":2.5274,"has_fulltext":true,"cited_by_count":25,"citation_normalized_percentile":{"value":0.89507849,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"7","issue":"1","first_page":"e1001055","last_page":"e1001055"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.7772420644760132},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7770035266876221},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7755564451217651},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6059272289276123},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.48714205622673035},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.47760865092277527},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"Upper ontology","score":0.4724453091621399},{"id":"https://openalex.org/keywords/consistency","display_name":"Consistency (knowledge bases)","score":0.4680497348308563},{"id":"https://openalex.org/keywords/unified-medical-language-system","display_name":"Unified Medical Language System","score":0.4263584613800049},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4154406785964966},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.40456855297088623},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3933199644088745},{"id":"https://openalex.org/keywords/suggested-upper-merged-ontology","display_name":"Suggested Upper Merged Ontology","score":0.29177308082580566},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.27487117052078247},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.1512853503227234},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08032417297363281}],"concepts":[{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.7772420644760132},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7770035266876221},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7755564451217651},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6059272289276123},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.48714205622673035},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.47760865092277527},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.4724453091621399},{"id":"https://openalex.org/C2776436953","wikidata":"https://www.wikidata.org/wiki/Q5163215","display_name":"Consistency (knowledge bases)","level":2,"score":0.4680497348308563},{"id":"https://openalex.org/C69505689","wikidata":"https://www.wikidata.org/wiki/Q455338","display_name":"Unified Medical Language System","level":2,"score":0.4263584613800049},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4154406785964966},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.40456855297088623},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3933199644088745},{"id":"https://openalex.org/C50971890","wikidata":"https://www.wikidata.org/wiki/Q7635093","display_name":"Suggested Upper Merged Ontology","level":4,"score":0.29177308082580566},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.27487117052078247},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.1512853503227234},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08032417297363281},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1371/journal.pcbi.1001055","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1001055","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1001055&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:21249231","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21249231","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:uchicago.tind.io:10226","is_oa":true,"landing_page_url":"http://knowledge.uchicago.edu/record/10226","pdf_url":null,"source":{"id":"https://openalex.org/S4306402460","display_name":"Knowledge@UChicago (University of Chicago)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I40347166","host_organization_name":"University of Chicago","host_organization_lineage":["https://openalex.org/I40347166"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://knowledge.uchicago.edu/record/10226","raw_type":"Text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.965.3169","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.965.3169","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://europepmc.org/backend/ptpmcrender.fcgi?accid%3DPMC3020923%26blobtype%3Dpdf","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:0cea09b3f92147639eedebdf6f761684","is_oa":false,"landing_page_url":"https://doaj.org/article/0cea09b3f92147639eedebdf6f761684","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 7, Iss 1, p e1001055 (2011)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/139612","is_oa":true,"landing_page_url":"https://figshare.com/articles/Benchmarking_Ontologies_Bigger_or_Better_/139612","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:pubmedcentral.nih.gov:3020923","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3020923","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1001055","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1001055","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1001055&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.4399999976158142}],"awards":[{"id":"https://openalex.org/G2547184436","display_name":null,"funder_award_id":"R01LM010132","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G297152156","display_name":null,"funder_award_id":"CA121852","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4044384731","display_name":null,"funder_award_id":"U54 CA121852","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2018737226.pdf","grobid_xml":"https://content.openalex.org/works/W2018737226.grobid-xml"},"referenced_works_count":92,"referenced_works":["https://openalex.org/W14338165","https://openalex.org/W63585209","https://openalex.org/W70048713","https://openalex.org/W85880394","https://openalex.org/W90362830","https://openalex.org/W109765044","https://openalex.org/W116322939","https://openalex.org/W195729069","https://openalex.org/W197270748","https://openalex.org/W259867901","https://openalex.org/W291570921","https://openalex.org/W640692469","https://openalex.org/W1480825649","https://openalex.org/W1483044734","https://openalex.org/W1483046884","https://openalex.org/W1486440197","https://openalex.org/W1496417456","https://openalex.org/W1539557053","https://openalex.org/W1541028277","https://openalex.org/W1547269118","https://openalex.org/W1550258693","https://openalex.org/W1563421732","https://openalex.org/W1581325729","https://openalex.org/W1606238867","https://openalex.org/W1665997306","https://openalex.org/W1969711083","https://openalex.org/W1978241768","https://openalex.org/W1985871253","https://openalex.org/W1996430422","https://openalex.org/W2000492887","https://openalex.org/W2001364212","https://openalex.org/W2003458432","https://openalex.org/W2010798628","https://openalex.org/W2011042650","https://openalex.org/W2026656222","https://openalex.org/W2031185328","https://openalex.org/W2047032662","https://openalex.org/W2052514670","https://openalex.org/W2062040469","https://openalex.org/W2068055268","https://openalex.org/W2078922557","https://openalex.org/W2088772747","https://openalex.org/W2097395913","https://openalex.org/W2100017293","https://openalex.org/W2102381086","https://openalex.org/W2103017472","https://openalex.org/W2105941683","https://openalex.org/W2112652344","https://openalex.org/W2122402213","https://openalex.org/W2123982464","https://openalex.org/W2128298129","https://openalex.org/W2132232128","https://openalex.org/W2133109597","https://openalex.org/W2133932679","https://openalex.org/W2134363729","https://openalex.org/W2135940255","https://openalex.org/W2136514583","https://openalex.org/W2147818521","https://openalex.org/W2148216095","https://openalex.org/W2150838562","https://openalex.org/W2156239742","https://openalex.org/W2157401733","https://openalex.org/W2157666137","https://openalex.org/W2166718065","https://openalex.org/W2169155903","https://openalex.org/W2175268987","https://openalex.org/W2257876130","https://openalex.org/W2288209531","https://openalex.org/W2501765443","https://openalex.org/W2543625748","https://openalex.org/W2798858855","https://openalex.org/W2882319491","https://openalex.org/W2977393556","https://openalex.org/W2979401726","https://openalex.org/W2994097334","https://openalex.org/W3215527884","https://openalex.org/W4212900242","https://openalex.org/W4230553559","https://openalex.org/W4242753540","https://openalex.org/W4285719527","https://openalex.org/W6603694148","https://openalex.org/W6604711789","https://openalex.org/W6608031492","https://openalex.org/W6609700116","https://openalex.org/W6628733704","https://openalex.org/W6636215346","https://openalex.org/W6662206603","https://openalex.org/W6678067405","https://openalex.org/W6692126448","https://openalex.org/W6769430610","https://openalex.org/W6771168276","https://openalex.org/W7032606057"],"related_works":["https://openalex.org/W1506177826","https://openalex.org/W2726617685","https://openalex.org/W2914601452","https://openalex.org/W2127299687","https://openalex.org/W2111194626","https://openalex.org/W1794266373","https://openalex.org/W1562796463","https://openalex.org/W2399880385","https://openalex.org/W2397553363","https://openalex.org/W2074013882"],"abstract_inverted_index":{"A":[0],"scientific":[1],"ontology":[2,80,149,222],"is":[3],"a":[4,10,67,102,154,175],"formal":[5],"representation":[6,140],"of":[7,23,52,61,69,93,104,110,138,162,185,192,213,232,241],"knowledge":[8,83],"within":[9,153],"domain,":[11],"typically":[12],"including":[13],"central":[14],"concepts,":[15],"their":[16,227],"properties,":[17],"and":[18,25,36,75,107,127,141,150,167,203,223,235,239],"relations.":[19],"With":[20],"the":[21,41,49,59,73,94,111,136,146,193,211,219,237],"rise":[22],"computers":[24],"high-throughput":[26],"data":[27,34],"collection,":[28],"ontologies":[29,98,173,206],"have":[30,174],"become":[31],"essential":[32],"to":[33,101,118,144,209,217],"mining":[35],"sharing":[37],"across":[38,244],"communities":[39],"in":[40,200],"biomedical":[42,233],"sciences.":[43],"Powerful":[44],"approaches":[45],"exist":[46],"for":[47,57,229],"testing":[48],"internal":[50],"consistency":[51],"an":[53,79],"ontology,":[54],"but":[55],"not":[56],"assessing":[58],"fidelity":[60],"its":[62,82],"domain":[63,224],"representation.":[64],"We":[65,85],"introduce":[66],"family":[68],"metrics":[70,89],"that":[71,121,132],"describe":[72],"breadth":[74],"depth":[76],"with":[77,99,116],"which":[78],"represents":[81],"domain.":[84,155],"then":[86],"test":[87],"these":[88],"using":[90],"(1)":[91],"four":[92],"most":[95,112],"common":[96],"medical":[97,105,163],"respect":[100,117],"corpus":[103],"documents":[106],"(2)":[108],"seven":[109],"popular":[113],"English":[114,165,180],"thesauri":[115],"three":[119],"corpora":[120],"sample":[122],"language":[123],"from":[124,169],"medicine,":[125,201],"news,":[126,202],"novels.":[128,204],"Here":[129],"we":[130],"show":[131],"our":[133,215],"approach":[134],"captures":[135],"quality":[137],"ontological":[139],"guides":[142],"efforts":[143],"narrow":[145],"breach":[147],"between":[148,221],"collective":[151],"discourse":[152,168],"Our":[156],"results":[157],"also":[158],"demonstrate":[159],"key":[160],"features":[161],"ontologies,":[164],"thesauri,":[166],"different":[170],"domains.":[171],"Medical":[172],"small":[176],"intersection,":[177],"as":[178,190],"do":[179],"thesauri.":[181],"Moreover,":[182],"dialects":[183],"characteristic":[184],"distinct":[186],"domains":[187],"vary":[188],"strikingly":[189],"many":[191],"same":[194],"words":[195],"are":[196,207],"used":[197],"quite":[198],"differently":[199],"As":[205],"intended":[208],"mirror":[210],"state":[212],"knowledge,":[214],"methods":[216],"tighten":[218],"fit":[220],"will":[225],"increase":[226],"relevance":[228],"new":[230],"areas":[231],"science":[234],"improve":[236],"accuracy":[238],"power":[240],"inferences":[242],"computed":[243],"them.":[245]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":6}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
