{"id":"https://openalex.org/W2111472630","doi":"https://doi.org/10.1371/journal.pcbi.1000918","title":"An Introduction to Biomolecular Graphics","display_name":"An Introduction to Biomolecular Graphics","publication_year":2010,"publication_date":"2010-08-26","ids":{"openalex":"https://openalex.org/W2111472630","doi":"https://doi.org/10.1371/journal.pcbi.1000918","mag":"2111472630","pmid":"https://pubmed.ncbi.nlm.nih.gov/20865174"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1000918","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1000918","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1000918&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1000918&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022761529","display_name":"Cameron Mura","orcid":"https://orcid.org/0000-0001-7985-2561"},"institutions":[{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Cameron Mura","raw_affiliation_strings":["Department of Chemistry, University of Virginia, Charlottesville, Virginia, United States of America. cmura@virginia.edu","Department of Chemistry, University of Virginia, Charlottesville, Virginia, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, University of Virginia, Charlottesville, Virginia, United States of America. cmura@virginia.edu","institution_ids":["https://openalex.org/I51556381"]},{"raw_affiliation_string":"Department of Chemistry, University of Virginia, Charlottesville, Virginia, United States of America","institution_ids":["https://openalex.org/I51556381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071307526","display_name":"Colin M. McCrimmon","orcid":"https://orcid.org/0000-0003-1157-9858"},"institutions":[{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Colin M. McCrimmon","raw_affiliation_strings":["Department of Chemistry, University of Virginia, Charlottesville, Virginia, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, University of Virginia, Charlottesville, Virginia, United States of America","institution_ids":["https://openalex.org/I51556381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060798476","display_name":"Jason Vertrees","orcid":null},"institutions":[{"id":"https://openalex.org/I203455613","display_name":"Schrodinger (United States)","ror":"https://ror.org/05a3z6914","country_code":"US","type":"company","lineage":["https://openalex.org/I203455613"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jason Vertrees","raw_affiliation_strings":["Schr\u00f6dinger LLC, New York, New York, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Schr\u00f6dinger LLC, New York, New York, United States of America","institution_ids":["https://openalex.org/I203455613"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053075000","display_name":"M.R. Sawaya","orcid":"https://orcid.org/0000-0003-0874-9043"},"institutions":[{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael R. Sawaya","raw_affiliation_strings":["Howard Hughes Medical Institute, University of California, Los Angeles, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Howard Hughes Medical Institute, University of California, Los Angeles, California, United States of America","institution_ids":["https://openalex.org/I1344073410"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5022761529"],"corresponding_institution_ids":["https://openalex.org/I51556381"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.4083,"has_fulltext":true,"cited_by_count":64,"citation_normalized_percentile":{"value":0.63816677,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"6","issue":"8","first_page":"e1000918","last_page":"e1000918"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9743000268936157,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9394000172615051,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.6093409657478333},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics","score":0.514057993888855},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5131069421768188},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.48790404200553894},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4149157404899597},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3226497769355774},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21164032816886902},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20414674282073975},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.19470062851905823},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.09714210033416748}],"concepts":[{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.6093409657478333},{"id":"https://openalex.org/C77660652","wikidata":"https://www.wikidata.org/wiki/Q150971","display_name":"Computer graphics","level":2,"score":0.514057993888855},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5131069421768188},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.48790404200553894},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4149157404899597},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3226497769355774},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21164032816886902},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20414674282073975},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.19470062851905823},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.09714210033416748}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1000918","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1000918","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1000918&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:20865174","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20865174","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:arXiv.org:1407.4071","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1407.4071","pdf_url":"https://arxiv.org/pdf/1407.4071","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:doaj.org/article:a5c2a22c0e254011a094769be56ffd2f","is_oa":true,"landing_page_url":"https://doaj.org/article/a5c2a22c0e254011a094769be56ffd2f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 6, Iss 8, p e1000918 (2010)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/141996","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/An_Introduction_to_Biomolecular_Graphics/141996","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:pubmedcentral.nih.gov:2928806","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2928806","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1000918","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1000918","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1000918&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.7300000190734863,"id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G5759761504","display_name":null,"funder_award_id":"J-971","funder_id":"https://openalex.org/F4320309424","funder_display_name":"Thomas F. and Kate Miller Jeffress Memorial Trust"}],"funders":[{"id":"https://openalex.org/F4320306082","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90"},{"id":"https://openalex.org/F4320309424","display_name":"Thomas F. and Kate Miller Jeffress Memorial Trust","ror":"https://ror.org/006tvg625"},{"id":"https://openalex.org/F4320310536","display_name":"University of Virginia","ror":"https://ror.org/0153tk833"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W157880548","https://openalex.org/W255996521","https://openalex.org/W1511893839","https://openalex.org/W1964716020","https://openalex.org/W1965112674","https://openalex.org/W1967591830","https://openalex.org/W1971623795","https://openalex.org/W1975588116","https://openalex.org/W1983486843","https://openalex.org/W1984827926","https://openalex.org/W1984981416","https://openalex.org/W1986518446","https://openalex.org/W1988852501","https://openalex.org/W1990850210","https://openalex.org/W2009294482","https://openalex.org/W2019698558","https://openalex.org/W2019991560","https://openalex.org/W2023309667","https://openalex.org/W2029582401","https://openalex.org/W2029667189","https://openalex.org/W2040219737","https://openalex.org/W2045820581","https://openalex.org/W2056901100","https://openalex.org/W2058061271","https://openalex.org/W2058554925","https://openalex.org/W2067057734","https://openalex.org/W2070071316","https://openalex.org/W2071740908","https://openalex.org/W2089638270","https://openalex.org/W2090612467","https://openalex.org/W2096459937","https://openalex.org/W2105439272","https://openalex.org/W2111472630","https://openalex.org/W2117537971","https://openalex.org/W2150981663","https://openalex.org/W2153423033","https://openalex.org/W2154069299","https://openalex.org/W2155843307","https://openalex.org/W2163210644","https://openalex.org/W2168721191","https://openalex.org/W2170955251","https://openalex.org/W2327525319","https://openalex.org/W3092458370","https://openalex.org/W4206594377","https://openalex.org/W4372229493","https://openalex.org/W6609701964","https://openalex.org/W6708436123"],"related_works":["https://openalex.org/W2068608913","https://openalex.org/W3124914020","https://openalex.org/W2141033859","https://openalex.org/W2077542787","https://openalex.org/W2156434174","https://openalex.org/W2071701083","https://openalex.org/W2383687187","https://openalex.org/W2070401501","https://openalex.org/W2121496884","https://openalex.org/W1980956817"],"abstract_inverted_index":{"One":[0],"need":[1],"only":[2],"compare":[3],"the":[4,11,93,105],"number":[5],"of":[6,18,72,76,95,104,108,125,131],"three-dimensional":[7],"molecular":[8,77,106,114,144],"illustrations":[9],"in":[10,23,32,99,123],"first":[12,143],"(1990)":[13],"and":[14,41,47,52,97],"third":[15],"(2004)":[16],"editions":[17],"Voet":[19],"&":[20],"Voet's":[21],"\"Biochemistry\"":[22],"order":[24],"to":[25,44,50,91],"appreciate":[26],"this":[27],"field's":[28],"profound":[29],"communicative":[30],"value":[31],"modern":[33],"biological":[34,83,109],"sciences":[35],"--":[36,119],"ranging":[37],"from":[38,86],"medicine,":[39],"physiology,":[40],"cell":[42],"biology,":[43],"pharmaceutical":[45],"chemistry":[46],"drug":[48],"design,":[49],"structural":[51],"computational":[53],"biology.":[54],"The":[55,69,128],"clich\\'e":[56],"about":[57],"a":[58,62,136],"picture":[59],"being":[60],"worth":[61],"thousand":[63],"words":[64],"is":[65,89,116,133],"quite":[66],"poignant":[67],"here:":[68],"information":[70],"'content'":[71],"an":[73],"effectively-constructed":[74],"piece":[75],"graphics":[78,98,115],"can":[79],"be":[80],"immense.":[81],"Because":[82],"function":[84],"arises":[85],"structure,":[87],"it":[88],"difficult":[90],"overemphasize":[92],"utility":[94],"visualization":[96],"molding":[100],"our":[101],"current":[102],"understanding":[103],"nature":[107],"systems.":[110],"Nevertheless,":[111],"creating":[112],"effective":[113],"not":[117],"easy":[118],"neither":[120],"conceptually,":[121],"nor":[122],"terms":[124],"effort":[126],"required.":[127],"present":[129],"collection":[130],"Rules":[132],"meant":[134],"as":[135],"guide":[137],"for":[138],"those":[139],"embarking":[140],"upon":[141],"their":[142],"illustrations.":[145]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-05-19T21:40:30.786675","created_date":"2025-10-10T00:00:00"}
