{"id":"https://openalex.org/W2169823165","doi":"https://doi.org/10.1371/journal.pcbi.1000904","title":"Graph-Based Analysis of the Metabolic Exchanges between Two Co-Resident Intracellular Symbionts, Baumannia cicadellinicola and Sulcia muelleri, with Their Insect Host, Homalodisca coagulata","display_name":"Graph-Based Analysis of the Metabolic Exchanges between Two Co-Resident Intracellular Symbionts, Baumannia cicadellinicola and Sulcia muelleri, with Their Insect Host, Homalodisca coagulata","publication_year":2010,"publication_date":"2010-09-02","ids":{"openalex":"https://openalex.org/W2169823165","doi":"https://doi.org/10.1371/journal.pcbi.1000904","mag":"2169823165","pmid":"https://pubmed.ncbi.nlm.nih.gov/20838465"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1000904","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1000904","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1000904","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001473736","display_name":"Ludovic Cottret","orcid":"https://orcid.org/0000-0001-7418-7750"},"institutions":[{"id":"https://openalex.org/I1314251682","display_name":"Institut National de la Recherche Agronomique","ror":"https://ror.org/05y503v71","country_code":"MA","type":"facility","lineage":["https://openalex.org/I1314251682"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]}],"countries":["FR","MA"],"is_corresponding":true,"raw_author_name":"Ludovic Cottret","raw_affiliation_strings":["INRA, UMR1089 X\u00e9nobiotiques, Toulouse, France. Ludovic.Cottret@toulouse.inra.fr","INRA - Institut National de la Recherche Agronomique (France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INRA, UMR1089 X\u00e9nobiotiques, Toulouse, France. Ludovic.Cottret@toulouse.inra.fr","institution_ids":["https://openalex.org/I1314251682"]},{"raw_affiliation_string":"INRA - Institut National de la Recherche Agronomique (France)","institution_ids":["https://openalex.org/I4210088668"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033274444","display_name":"Paulo Vieira Milreu","orcid":null},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210101348","display_name":"Centre Inria de l'Universit\u00e9 Grenoble Alpes","ror":"https://ror.org/00n8d6z93","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1326498283","https://openalex.org/I4210101348"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Paulo Vieira Milreu","raw_affiliation_strings":["Bamboo Team, INRIA Grenoble-Rh\u00f4ne-Alpes, Montbonnot Saint-Martin, France","Laboratoire de Biom\u00e9trie et Biologie Evolutive, CNRS UMR5558, Universit\u00e9 Lyon 1, Villeurbanne, France","BAMBOO - An algorithmic view on genomes, cells, and environments (Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive. UMR CNRS 5558 Campus de La Doua - Universit\u00e9 Claude Bernard - Lyon 1 B\u00e2timent Gr\u00e9goire Mendel - 16 rue Raphael Dubois 69 100 Villeurbanne -- INRIA Grenoble - Rh\u00f4ne-Alpes Inovall\u00e9e 655 avenue de l'Europe -Montbonnot 38 334 Saint Ismier Cedex France - France)","LBBE - Laboratoire de Biom\u00e9trie et Biologie Evolutive - UMR 5558 (43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bamboo Team, INRIA Grenoble-Rh\u00f4ne-Alpes, Montbonnot Saint-Martin, France","institution_ids":["https://openalex.org/I4210101348"]},{"raw_affiliation_string":"Laboratoire de Biom\u00e9trie et Biologie Evolutive, CNRS UMR5558, Universit\u00e9 Lyon 1, Villeurbanne, France","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"BAMBOO - An algorithmic view on genomes, cells, and environments (Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive. UMR CNRS 5558 Campus de La Doua - Universit\u00e9 Claude Bernard - Lyon 1 B\u00e2timent Gr\u00e9goire Mendel - 16 rue Raphael Dubois 69 100 Villeurbanne -- INRIA Grenoble - Rh\u00f4ne-Alpes Inovall\u00e9e 655 avenue de l'Europe -Montbonnot 38 334 Saint Ismier Cedex France - France)","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I1326498283","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"LBBE - Laboratoire de Biom\u00e9trie et Biologie Evolutive - UMR 5558 (43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)","institution_ids":["https://openalex.org/I4210135640"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5106184492","display_name":"Vicente Acu\u00f1a","orcid":null},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210101348","display_name":"Centre Inria de l'Universit\u00e9 Grenoble Alpes","ror":"https://ror.org/00n8d6z93","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1326498283","https://openalex.org/I4210101348"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Vicente Acu\u00f1a","raw_affiliation_strings":["Bamboo Team, INRIA Grenoble-Rh\u00f4ne-Alpes, Montbonnot Saint-Martin, France","Laboratoire de Biom\u00e9trie et Biologie Evolutive, CNRS UMR5558, Universit\u00e9 Lyon 1, Villeurbanne, France","BAMBOO - An algorithmic view on genomes, cells, and environments (Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive. UMR CNRS 5558 Campus de La Doua - Universit\u00e9 Claude Bernard - Lyon 1 B\u00e2timent Gr\u00e9goire Mendel - 16 rue Raphael Dubois 69 100 Villeurbanne -- INRIA Grenoble - Rh\u00f4ne-Alpes Inovall\u00e9e 655 avenue de l'Europe -Montbonnot 38 334 Saint Ismier Cedex France - France)","Baobab [LBBE] (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bamboo Team, INRIA Grenoble-Rh\u00f4ne-Alpes, Montbonnot Saint-Martin, France","institution_ids":["https://openalex.org/I4210101348"]},{"raw_affiliation_string":"Laboratoire de Biom\u00e9trie et Biologie Evolutive, CNRS UMR5558, Universit\u00e9 Lyon 1, Villeurbanne, France","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"BAMBOO - An algorithmic view on genomes, cells, and environments (Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive. UMR CNRS 5558 Campus de La Doua - Universit\u00e9 Claude Bernard - Lyon 1 B\u00e2timent Gr\u00e9goire Mendel - 16 rue Raphael Dubois 69 100 Villeurbanne -- INRIA Grenoble - Rh\u00f4ne-Alpes Inovall\u00e9e 655 avenue de l'Europe -Montbonnot 38 334 Saint Ismier Cedex France - France)","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I1326498283","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Baobab [LBBE] (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)","institution_ids":["https://openalex.org/I4210135640"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064823807","display_name":"Alberto Marchetti-Spaccamela","orcid":"https://orcid.org/0000-0002-7991-4416"},"institutions":[{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alberto Marchetti-Spaccamela","raw_affiliation_strings":["Universit\u00e0 di Roma \u201cLa Sapienza,\u201d Rome, Italy","DIS - Dipartimento di Informatica e Sistemistica 'Antonio Ruberti' (Sapienza Universit\u00e0 di Roma - Via Ariosto 25, 00185 Roma - Italy)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e0 di Roma \u201cLa Sapienza,\u201d Rome, Italy","institution_ids":["https://openalex.org/I861853513"]},{"raw_affiliation_string":"DIS - Dipartimento di Informatica e Sistemistica 'Antonio Ruberti' (Sapienza Universit\u00e0 di Roma - Via Ariosto 25, 00185 Roma - Italy)","institution_ids":["https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044184077","display_name":"Leen Stougie","orcid":"https://orcid.org/0000-0001-6938-8902"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I1341640284","display_name":"Centrum Wiskunde & Informatica","ror":"https://ror.org/00x7ekv49","country_code":"NL","type":"facility","lineage":["https://openalex.org/I1341640284","https://openalex.org/I2800991832","https://openalex.org/I4405262988"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I83019370","display_name":"Eindhoven University of Technology","ror":"https://ror.org/02c2kyt77","country_code":"NL","type":"education","lineage":["https://openalex.org/I83019370"]},{"id":"https://openalex.org/I865915315","display_name":"Vrije Universiteit Amsterdam","ror":"https://ror.org/008xxew50","country_code":"NL","type":"education","lineage":["https://openalex.org/I865915315"]}],"countries":["FR","NL"],"is_corresponding":false,"raw_author_name":"Leen Stougie","raw_affiliation_strings":["Centrum voor Wiskunde en Informatica, Amsterdam, The Netherlands","Vrije Universiteit Amsterdam, Amsterdam, The Netherlands","Department of mathematics and computing science [Eindhoven] (P.O. Box 513 5600 MB Eindhoven - Netherlands)","BAMBOO - An algorithmic view on genomes, cells, and environments (Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive. UMR CNRS 5558 Campus de La Doua - Universit\u00e9 Claude Bernard - Lyon 1 B\u00e2timent Gr\u00e9goire Mendel - 16 rue Raphael Dubois 69 100 Villeurbanne -- INRIA Grenoble - Rh\u00f4ne-Alpes Inovall\u00e9e 655 avenue de l'Europe -Montbonnot 38 334 Saint Ismier Cedex France - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centrum voor Wiskunde en Informatica, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I1341640284"]},{"raw_affiliation_string":"Vrije Universiteit Amsterdam, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I865915315"]},{"raw_affiliation_string":"Department of mathematics and computing science [Eindhoven] (P.O. Box 513 5600 MB Eindhoven - Netherlands)","institution_ids":["https://openalex.org/I83019370"]},{"raw_affiliation_string":"BAMBOO - An algorithmic view on genomes, cells, and environments (Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive. UMR CNRS 5558 Campus de La Doua - Universit\u00e9 Claude Bernard - Lyon 1 B\u00e2timent Gr\u00e9goire Mendel - 16 rue Raphael Dubois 69 100 Villeurbanne -- INRIA Grenoble - Rh\u00f4ne-Alpes Inovall\u00e9e 655 avenue de l'Europe -Montbonnot 38 334 Saint Ismier Cedex France - France)","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I1326498283","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032349546","display_name":"Hubert Charles","orcid":"https://orcid.org/0000-0002-0809-4705"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210101348","display_name":"Centre Inria de l'Universit\u00e9 Grenoble Alpes","ror":"https://ror.org/00n8d6z93","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1326498283","https://openalex.org/I4210101348"]},{"id":"https://openalex.org/I4210129169","display_name":"Biologie Fonctionnelle Insectes et Interactions","ror":"https://ror.org/03d1jma17","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I4210088668","https://openalex.org/I4210129169","https://openalex.org/I48430043"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Hubert Charles","raw_affiliation_strings":["Bamboo Team, INRIA Grenoble-Rh\u00f4ne-Alpes, Montbonnot Saint-Martin, France","INRA, INSA-Lyon, UMR203 BF2I, Biologie Fonctionnelle et Interactions, Universit\u00e9 de Lyon, Villeurbanne, France","BAMBOO - An algorithmic view on genomes, cells, and environments (Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive. UMR CNRS 5558 Campus de La Doua - Universit\u00e9 Claude Bernard - Lyon 1 B\u00e2timent Gr\u00e9goire Mendel - 16 rue Raphael Dubois 69 100 Villeurbanne -- INRIA Grenoble - Rh\u00f4ne-Alpes Inovall\u00e9e 655 avenue de l'Europe -Montbonnot 38 334 Saint Ismier Cedex France - France)","BF2I - Biologie Fonctionnelle, Insectes et Interactions (INSA Bat. L. Pasteur 20 avenue Albert Einstein 69621 Villeurbanne cedex - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bamboo Team, INRIA Grenoble-Rh\u00f4ne-Alpes, Montbonnot Saint-Martin, France","institution_ids":["https://openalex.org/I4210101348"]},{"raw_affiliation_string":"INRA, INSA-Lyon, UMR203 BF2I, Biologie Fonctionnelle et Interactions, Universit\u00e9 de Lyon, Villeurbanne, France","institution_ids":["https://openalex.org/I4210129169","https://openalex.org/I100532134"]},{"raw_affiliation_string":"BAMBOO - An algorithmic view on genomes, cells, and environments (Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive. UMR CNRS 5558 Campus de La Doua - Universit\u00e9 Claude Bernard - Lyon 1 B\u00e2timent Gr\u00e9goire Mendel - 16 rue Raphael Dubois 69 100 Villeurbanne -- INRIA Grenoble - Rh\u00f4ne-Alpes Inovall\u00e9e 655 avenue de l'Europe -Montbonnot 38 334 Saint Ismier Cedex France - France)","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I1326498283","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"BF2I - Biologie Fonctionnelle, Insectes et Interactions (INSA Bat. L. Pasteur 20 avenue Albert Einstein 69621 Villeurbanne cedex - France)","institution_ids":["https://openalex.org/I4210129169"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5110531794","display_name":"Marie-France Sagot","orcid":null},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210101348","display_name":"Centre Inria de l'Universit\u00e9 Grenoble Alpes","ror":"https://ror.org/00n8d6z93","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1326498283","https://openalex.org/I4210101348"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Marie-France Sagot","raw_affiliation_strings":["Bamboo Team, INRIA Grenoble-Rh\u00f4ne-Alpes, Montbonnot Saint-Martin, France","Laboratoire de Biom\u00e9trie et Biologie Evolutive, CNRS UMR5558, Universit\u00e9 Lyon 1, Villeurbanne, France","Baobab [LBBE] (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)","BAMBOO - An algorithmic view on genomes, cells, and environments (Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive. UMR CNRS 5558 Campus de La Doua - Universit\u00e9 Claude Bernard - Lyon 1 B\u00e2timent Gr\u00e9goire Mendel - 16 rue Raphael Dubois 69 100 Villeurbanne -- INRIA Grenoble - Rh\u00f4ne-Alpes Inovall\u00e9e 655 avenue de l'Europe -Montbonnot 38 334 Saint Ismier Cedex France - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bamboo Team, INRIA Grenoble-Rh\u00f4ne-Alpes, Montbonnot Saint-Martin, France","institution_ids":["https://openalex.org/I4210101348"]},{"raw_affiliation_string":"Laboratoire de Biom\u00e9trie et Biologie Evolutive, CNRS UMR5558, Universit\u00e9 Lyon 1, Villeurbanne, France","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Baobab [LBBE] (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)","institution_ids":["https://openalex.org/I4210135640"]},{"raw_affiliation_string":"BAMBOO - An algorithmic view on genomes, cells, and environments (Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive. UMR CNRS 5558 Campus de La Doua - Universit\u00e9 Claude Bernard - Lyon 1 B\u00e2timent Gr\u00e9goire Mendel - 16 rue Raphael Dubois 69 100 Villeurbanne -- INRIA Grenoble - Rh\u00f4ne-Alpes Inovall\u00e9e 655 avenue de l'Europe -Montbonnot 38 334 Saint Ismier Cedex France - France)","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I1326498283","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5001473736"],"corresponding_institution_ids":["https://openalex.org/I1314251682","https://openalex.org/I4210088668"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":4.9934,"has_fulltext":true,"cited_by_count":50,"citation_normalized_percentile":{"value":0.95223742,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"6","issue":"9","first_page":"e1000904","last_page":"e1000904"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12134","display_name":"Insect symbiosis and bacterial influences","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1109","display_name":"Insect Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12134","display_name":"Insect symbiosis and bacterial influences","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1109","display_name":"Insect Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10487","display_name":"Plant and animal studies","score":0.9728999733924866,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7496594786643982},{"id":"https://openalex.org/keywords/metabolic-network","display_name":"Metabolic network","score":0.7033791542053223},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.6771567463874817},{"id":"https://openalex.org/keywords/metabolic-pathway","display_name":"Metabolic pathway","score":0.6014266610145569},{"id":"https://openalex.org/keywords/metabolism","display_name":"Metabolism","score":0.5803402066230774},{"id":"https://openalex.org/keywords/symbiosis","display_name":"Symbiosis","score":0.5017120838165283},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.4475187659263611},{"id":"https://openalex.org/keywords/botany","display_name":"Botany","score":0.3220560848712921},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.2934260368347168},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20097100734710693}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7496594786643982},{"id":"https://openalex.org/C101810790","wikidata":"https://www.wikidata.org/wiki/Q2263094","display_name":"Metabolic network","level":2,"score":0.7033791542053223},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.6771567463874817},{"id":"https://openalex.org/C192989942","wikidata":"https://www.wikidata.org/wiki/Q68685","display_name":"Metabolic pathway","level":3,"score":0.6014266610145569},{"id":"https://openalex.org/C62231903","wikidata":"https://www.wikidata.org/wiki/Q1057","display_name":"Metabolism","level":2,"score":0.5803402066230774},{"id":"https://openalex.org/C43144210","wikidata":"https://www.wikidata.org/wiki/Q121610","display_name":"Symbiosis","level":3,"score":0.5017120838165283},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.4475187659263611},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.3220560848712921},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2934260368347168},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20097100734710693}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006430","descriptor_name":"Hemiptera","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006430","descriptor_name":"Hemiptera","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006430","descriptor_name":"Hemiptera","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006430","descriptor_name":"Hemiptera","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D006430","descriptor_name":"Hemiptera","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D006430","descriptor_name":"Hemiptera","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013559","descriptor_name":"Symbiosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013559","descriptor_name":"Symbiosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013559","descriptor_name":"Symbiosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020563","descriptor_name":"Gammaproteobacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020563","descriptor_name":"Gammaproteobacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020563","descriptor_name":"Gammaproteobacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020563","descriptor_name":"Gammaproteobacteria","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D020563","descriptor_name":"Gammaproteobacteria","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D020563","descriptor_name":"Gammaproteobacteria","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D041963","descriptor_name":"Bacteroidetes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D041963","descriptor_name":"Bacteroidetes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D041963","descriptor_name":"Bacteroidetes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D041963","descriptor_name":"Bacteroidetes","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D041963","descriptor_name":"Bacteroidetes","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D041963","descriptor_name":"Bacteroidetes","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D055442","descriptor_name":"Metabolome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055442","descriptor_name":"Metabolome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055442","descriptor_name":"Metabolome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":14,"locations":[{"id":"doi:10.1371/journal.pcbi.1000904","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1000904","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:20838465","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20838465","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:research.vu.nl:openaire/b86e517f-5dc3-4a1d-a8b6-8d7d25d501ed","is_oa":true,"landing_page_url":"https://research.vu.nl/en/publications/b86e517f-5dc3-4a1d-a8b6-8d7d25d501ed","pdf_url":null,"source":{"id":"https://openalex.org/S4306401107","display_name":"VU Research Portal","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I865915315","host_organization_name":"Vrije Universiteit Amsterdam","host_organization_lineage":["https://openalex.org/I865915315"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Cottret, L, Milreu, P V, Acuna, V, Marchetti-Spaccamela, A, Stougie, L, Charles, H & Sagot, M-F 2010, 'Graph-based analysis of the metabolic exchanges between two co-resident intracellular symbionts, baumannia cicadellinicola and sulcia muelleri with their insect host, homalodisca coagulata', PLoS Computational Biology, vol. 6, no. 9, pp. e1000904. https://doi.org/10.1371/journal.pcbi.1000904","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:cwi.nl:17335","is_oa":true,"landing_page_url":"https://ir.cwi.nl/pub/17335","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1000904&type=printable","source":{"id":"https://openalex.org/S7407055335","display_name":"Centrum Wiskunde & Informatica (CWI), the national research institute for mathematics and computer science in the Netherlands","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology vol. 6","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.351.6487","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.351.6487","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/41/8f/PLoS_Comput_Biol_2010_Sep_2_6(9)_e1000904.tar.gz","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.954.9089","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.954.9089","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://dare.ubvu.vu.nl/bitstream/handle/1871/21011/250556.pdf%3Bjsessionid%3D1A808B6C2F504DBF5D6C2E6BD56B08D6?sequence%3D2","raw_type":"text"},{"id":"pmh:oai:HAL:hal-00690650v1","is_oa":true,"landing_page_url":"https://hal.science/hal-00690650","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, 2010, 6 (9), epub ahead of print. ⟨10.1371/journal.pcbi.1000904⟩","raw_type":"Journal articles"},{"id":"pmh:oai:HAL:hal-02304740v1","is_oa":false,"landing_page_url":"https://hal-univ-lyon1.archives-ouvertes.fr/hal-02304740","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1553-734X","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:dare.ubvu.vu.nl:1871/21011","is_oa":false,"landing_page_url":"http://hdl.handle.net/1871/21011","pdf_url":null,"source":{"id":"https://openalex.org/S4306400546","display_name":"Digital Academic REpository of VU University Amsterdam (Vrije Universiteit Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I865915315","host_organization_name":"Vrije Universiteit Amsterdam","host_organization_lineage":["https://openalex.org/I865915315"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"6","raw_type":"Article / Letter to editor"},{"id":"pmh:oai:doaj.org/article:3f741568fa464145810ea87437ae0a0b","is_oa":true,"landing_page_url":"https://doaj.org/article/3f741568fa464145810ea87437ae0a0b","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 6, Iss 9, p e1000904 (2010)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/141849","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Graph_Based_Analysis_of_the_Metabolic_Exchanges_between_Two_Co_Resident_Intracellular_Symbionts_Baumannia_cicadellinicola_and_Sulcia_muelleri_with_Their_Insect_Host_Homalodisca_coagulata_/141849","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:iris.uniroma1.it:11573/356918","is_oa":false,"landing_page_url":"http://hdl.handle.net/11573/356918","pdf_url":null,"source":{"id":"https://openalex.org/S4377196107","display_name":"IRIS Research product catalog (Sapienza University of Rome)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:prodinra.inra.fr:43030","is_oa":true,"landing_page_url":"http://prodinra.inra.fr/record/43030","pdf_url":null,"source":{"id":"https://openalex.org/S4306400794","display_name":"Prodinra (INRA Bordeaux-Aquitaine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210088668","host_organization_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","host_organization_lineage":["https://openalex.org/I4210088668"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Plos Computational Biology 9 (6), e1000904. (2010)","raw_type":"ARTICLE"},{"id":"pmh:oai:pubmedcentral.nih.gov:2936742","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2936742","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1000904","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1000904","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.5400000214576721}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320321800","display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek","ror":"https://ror.org/04jsz6e67"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W199578245","https://openalex.org/W229097380","https://openalex.org/W612385696","https://openalex.org/W1957530341","https://openalex.org/W2017065632","https://openalex.org/W2021568374","https://openalex.org/W2034993111","https://openalex.org/W2040163542","https://openalex.org/W2042863944","https://openalex.org/W2057389251","https://openalex.org/W2059699049","https://openalex.org/W2082195055","https://openalex.org/W2082621456","https://openalex.org/W2088226054","https://openalex.org/W2099189421","https://openalex.org/W2108959333","https://openalex.org/W2123060905","https://openalex.org/W2124096367","https://openalex.org/W2133298156","https://openalex.org/W2153020710","https://openalex.org/W2158784643","https://openalex.org/W2159675211","https://openalex.org/W2916598060","https://openalex.org/W4298215674"],"related_works":["https://openalex.org/W4381737279","https://openalex.org/W2284855162","https://openalex.org/W4391105468","https://openalex.org/W2063475537","https://openalex.org/W2341681417","https://openalex.org/W1961707331","https://openalex.org/W2012938657","https://openalex.org/W1578136679","https://openalex.org/W2096004952","https://openalex.org/W2087715585"],"abstract_inverted_index":{"Endosymbiotic":[0],"bacteria":[1,20,97,240],"from":[2],"different":[3,24,138],"species":[4],"can":[5],"live":[6,50],"inside":[7,51],"cells":[8,53],"of":[9,40,54,66,77,92,119,131,140,152,159,163,172,180,200,237,254,275,288],"the":[10,37,55,61,70,75,90,99,117,120,128,141,149,160,167,169,173,178,208,232,235,238,252,259,276,280,285,289,293],"same":[11,142],"eukaryotic":[12],"organism.":[13],"Metabolic":[14],"exchanges":[15,63],"occur":[16],"between":[17,23,69,234],"host":[18],"and":[19,46,59,191,241,268,298],"but":[21,134],"also":[22,135],"endocytobionts.":[25],"Since":[26],"a":[27,212,217],"complete":[28],"genome":[29],"annotation":[30],"is":[31,102,123],"available":[32],"for":[33,83,185],"both,":[34],"we":[35,215,222],"built":[36],"metabolic":[38,62,85,113,129,161],"network":[39,162],"two":[41,121,186,239],"endosymbiotic":[42],"bacteria,":[43],"Sulcia":[44],"muelleri":[45,154,270],"Baumannia":[47],"cicadellinicola,":[48],"that":[49,89,116,148,221,248],"specific":[52],"sharpshooter":[56],"Homalodisca":[57],"coagulata":[58],"studied":[60],"involving":[64],"transfers":[65],"carbon":[67,100,150,170,286],"atoms":[68],"three.":[71],"We":[72,87,244],"automatically":[73],"determined":[74],"set":[76],"metabolites":[78,209,255,277,290],"potentially":[79],"exogenously":[80],"acquired":[81],"(seeds)":[82],"both":[84,96,112,265],"networks.":[86],"show":[88,147],"number":[91],"seeds":[93,108,201,247],"needed":[94],"by":[95,136,279,303],"in":[98,127,194,211,251,258],"metabolism":[101,151,171,179],"extremely":[103],"reduced.":[104],"Moreover,":[105],"only":[106,125,301],"three":[107],"are":[109,204,256,300],"common":[110],"to":[111,196,206,283,292,306],"networks,":[114],"indicating":[115],"complementarity":[118,233],"metabolisms":[122,236],"not":[124],"manifested":[126],"capabilities":[130],"each":[132],"bacterium,":[133],"their":[137,242],"use":[139],"environment.":[143],"Furthermore,":[144],"our":[145,229],"results":[146,226,263],"S.":[153,181,269],"may":[155,271],"be":[156,272],"completely":[157,273],"independent":[158,274],"B.":[164,266,304],"cicadellinicola.":[165],"On":[166],"contrary,":[168],"latter":[174],"appears":[175],"dependent":[176],"on":[177],"muelleri,":[182],"at":[183],"least":[184],"essential":[187],"amino":[188],"acids,":[189],"threonine":[190],"lysine.":[192],"Next,":[193],"order":[195],"define":[197],"which":[198],"subsets":[199],"(precursor":[202],"sets)":[203],"sufficient":[205],"produce":[207,284,307],"involved":[210,257],"symbiotic":[213,260,294],"function,":[214],"used":[216],"graph-based":[218],"method,":[219],"PITUFO,":[220],"recently":[223],"developed.":[224],"Our":[225,262],"highly":[227],"refine":[228],"knowledge":[230],"about":[231],"host.":[243],"thus":[245],"indicate":[246],"appear":[249],"obligatory":[250],"synthesis":[253],"function.":[261],"suggest":[264],"cicadellinicola":[267,305],"provided":[278,291],"co-resident":[281],"endocytobiont":[282],"backbone":[287],"system":[295],"(.,":[296],"thr":[297],"lys":[299],"exploited":[302],"its":[308],"proteins).":[309]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":6}],"updated_date":"2026-06-08T08:47:23.578185","created_date":"2025-10-10T00:00:00"}