{"id":"https://openalex.org/W2008944922","doi":"https://doi.org/10.1371/journal.pcbi.1000843","title":"Intergenic and Repeat Transcription in Human, Chimpanzee and Macaque Brains Measured by RNA-Seq","display_name":"Intergenic and Repeat Transcription in Human, Chimpanzee and Macaque Brains Measured by RNA-Seq","publication_year":2010,"publication_date":"2010-07-01","ids":{"openalex":"https://openalex.org/W2008944922","doi":"https://doi.org/10.1371/journal.pcbi.1000843","mag":"2008944922","pmid":"https://pubmed.ncbi.nlm.nih.gov/20617162"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1000843","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1000843","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1000843&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1000843&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076920720","display_name":"Augix Guohua Xu","orcid":"https://orcid.org/0000-0002-8509-1137"},"institutions":[{"id":"https://openalex.org/I4210118560","display_name":"Max Planck Institute for Evolutionary Anthropology","ror":"https://ror.org/02a33b393","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210118560"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Augix Guohua Xu","raw_affiliation_strings":["Partner Institute for Computational Biology, Shanghai, China","Max-Planck-Institute for Evolutionary Anthropology, Leipzig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Partner Institute for Computational Biology, Shanghai, China","institution_ids":[]},{"raw_affiliation_string":"Max-Planck-Institute for Evolutionary Anthropology, Leipzig, Germany","institution_ids":["https://openalex.org/I4210118560"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102101148","display_name":"Liu He","orcid":"https://orcid.org/0009-0005-2662-4211"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liu He","raw_affiliation_strings":["Graduate School of the Chinese Academy of Sciences, Shanghai, China","Partner Institute for Computational Biology, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate School of the Chinese Academy of Sciences, Shanghai, China","institution_ids":["https://openalex.org/I19820366"]},{"raw_affiliation_string":"Partner Institute for Computational Biology, Shanghai, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046913049","display_name":"Zhongshan Li","orcid":"https://orcid.org/0000-0002-0447-2748"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhongshan Li","raw_affiliation_strings":["Graduate School of the Chinese Academy of Sciences, Shanghai, China","Partner Institute for Computational Biology, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate School of the Chinese Academy of Sciences, Shanghai, China","institution_ids":["https://openalex.org/I19820366"]},{"raw_affiliation_string":"Partner Institute for Computational Biology, Shanghai, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101747836","display_name":"Ying Xu","orcid":"https://orcid.org/0000-0002-7504-7896"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ying Xu","raw_affiliation_strings":["Partner Institute for Computational Biology, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Partner Institute for Computational Biology, Shanghai, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101705871","display_name":"Mingfeng Li","orcid":"https://orcid.org/0000-0002-7959-6008"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mingfeng Li","raw_affiliation_strings":["Partner Institute for Computational Biology, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Partner Institute for Computational Biology, Shanghai, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049277889","display_name":"Xing Fu","orcid":"https://orcid.org/0000-0001-5419-2691"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xing Fu","raw_affiliation_strings":["Partner Institute for Computational Biology, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Partner Institute for Computational Biology, Shanghai, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101970478","display_name":"Yan Zheng","orcid":"https://orcid.org/0000-0001-6060-1084"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zheng Yan","raw_affiliation_strings":["Partner Institute for Computational Biology, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Partner Institute for Computational Biology, Shanghai, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100334778","display_name":"Yuan Yuan","orcid":"https://orcid.org/0000-0002-7394-9036"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yuan Yuan","raw_affiliation_strings":["Partner Institute for Computational Biology, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Partner Institute for Computational Biology, Shanghai, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077380721","display_name":"Corinna Menzel","orcid":null},"institutions":[{"id":"https://openalex.org/I4210142260","display_name":"Max Planck Institute for Molecular Genetics","ror":"https://ror.org/03ate3e03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210142260"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Corinna Menzel","raw_affiliation_strings":["Max Planck Institute for Molecular Genetics, Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institute for Molecular Genetics, Berlin, Germany","institution_ids":["https://openalex.org/I4210142260"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100368012","display_name":"Na Li","orcid":"https://orcid.org/0000-0001-6163-1648"},"institutions":[{"id":"https://openalex.org/I205582932","display_name":"Max Delbr\u00fcck Center","ror":"https://ror.org/04p5ggc03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I205582932"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Na Li","raw_affiliation_strings":["Max Delbr\u00fcck Centrum f\u00fcr Molekulare Medizin, Berlin Institute for Medical Systems Biology, Berlin-Buch, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Delbr\u00fcck Centrum f\u00fcr Molekulare Medizin, Berlin Institute for Medical Systems Biology, Berlin-Buch, Germany","institution_ids":["https://openalex.org/I205582932"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044316104","display_name":"Mehmet Somel","orcid":"https://orcid.org/0000-0002-3138-1307"},"institutions":[{"id":"https://openalex.org/I4210118560","display_name":"Max Planck Institute for Evolutionary Anthropology","ror":"https://ror.org/02a33b393","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210118560"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Mehmet Somel","raw_affiliation_strings":["Max-Planck-Institute for Evolutionary Anthropology, Leipzig, Germany","Partner Institute for Computational Biology, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max-Planck-Institute for Evolutionary Anthropology, Leipzig, Germany","institution_ids":["https://openalex.org/I4210118560"]},{"raw_affiliation_string":"Partner Institute for Computational Biology, Shanghai, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046973045","display_name":"Hao Hu","orcid":"https://orcid.org/0000-0002-3567-609X"},"institutions":[{"id":"https://openalex.org/I4210142260","display_name":"Max Planck Institute for Molecular Genetics","ror":"https://ror.org/03ate3e03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210142260"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hao Hu","raw_affiliation_strings":["Max Planck Institute for Molecular Genetics, Berlin, Germany","Partner Institute for Computational Biology, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institute for Molecular Genetics, Berlin, Germany","institution_ids":["https://openalex.org/I4210142260"]},{"raw_affiliation_string":"Partner Institute for Computational Biology, Shanghai, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100344574","display_name":"Wei Chen","orcid":"https://orcid.org/0000-0003-3263-1627"},"institutions":[{"id":"https://openalex.org/I4210142260","display_name":"Max Planck Institute for Molecular Genetics","ror":"https://ror.org/03ate3e03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210142260"]},{"id":"https://openalex.org/I205582932","display_name":"Max Delbr\u00fcck Center","ror":"https://ror.org/04p5ggc03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I205582932"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Wei Chen","raw_affiliation_strings":["Max Delbr\u00fcck Centrum f\u00fcr Molekulare Medizin, Berlin Institute for Medical Systems Biology, Berlin-Buch, Germany","Max Planck Institute for Molecular Genetics, Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Delbr\u00fcck Centrum f\u00fcr Molekulare Medizin, Berlin Institute for Medical Systems Biology, Berlin-Buch, Germany","institution_ids":["https://openalex.org/I205582932"]},{"raw_affiliation_string":"Max Planck Institute for Molecular Genetics, Berlin, Germany","institution_ids":["https://openalex.org/I4210142260"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012216367","display_name":"Svante P\u00e4\u00e4bo","orcid":"https://orcid.org/0000-0002-4670-6311"},"institutions":[{"id":"https://openalex.org/I4210118560","display_name":"Max Planck Institute for Evolutionary Anthropology","ror":"https://ror.org/02a33b393","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210118560"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Svante P\u00e4\u00e4bo","raw_affiliation_strings":["Max-Planck-Institute for Evolutionary Anthropology, Leipzig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max-Planck-Institute for Evolutionary Anthropology, Leipzig, Germany","institution_ids":["https://openalex.org/I4210118560"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044447616","display_name":"Philipp Khaitovich","orcid":"https://orcid.org/0000-0002-4305-0054"},"institutions":[{"id":"https://openalex.org/I4210118560","display_name":"Max Planck Institute for Evolutionary Anthropology","ror":"https://ror.org/02a33b393","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210118560"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Philipp Khaitovich","raw_affiliation_strings":["Max-Planck-Institute for Evolutionary Anthropology, Leipzig, Germany","Partner Institute for Computational Biology, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max-Planck-Institute for Evolutionary Anthropology, Leipzig, Germany","institution_ids":["https://openalex.org/I4210118560"]},{"raw_affiliation_string":"Partner Institute for Computational Biology, Shanghai, China","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":15,"corresponding_author_ids":["https://openalex.org/A5044447616","https://openalex.org/A5100344574"],"corresponding_institution_ids":["https://openalex.org/I205582932","https://openalex.org/I4210118560","https://openalex.org/I4210142260"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":4.1626,"has_fulltext":true,"cited_by_count":59,"citation_normalized_percentile":{"value":0.93678409,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"6","issue":"7","first_page":"e1000843","last_page":"e1000843"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8620612621307373},{"id":"https://openalex.org/keywords/intergenic-region","display_name":"Intergenic region","score":0.7537274956703186},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.6740385293960571},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.6608507037162781},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6033762097358704},{"id":"https://openalex.org/keywords/intron","display_name":"Intron","score":0.5721595287322998},{"id":"https://openalex.org/keywords/de-novo-transcriptome-assembly","display_name":"De novo transcriptome assembly","score":0.4857902526855469},{"id":"https://openalex.org/keywords/exon","display_name":"Exon","score":0.4521888792514801},{"id":"https://openalex.org/keywords/transcription","display_name":"Transcription (linguistics)","score":0.4390451908111572},{"id":"https://openalex.org/keywords/human-genome","display_name":"Human genome","score":0.425869882106781},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.33218133449554443},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.32401418685913086}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8620612621307373},{"id":"https://openalex.org/C195139083","wikidata":"https://www.wikidata.org/wiki/Q3463539","display_name":"Intergenic region","level":4,"score":0.7537274956703186},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.6740385293960571},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.6608507037162781},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6033762097358704},{"id":"https://openalex.org/C94671646","wikidata":"https://www.wikidata.org/wiki/Q207551","display_name":"Intron","level":3,"score":0.5721595287322998},{"id":"https://openalex.org/C50489715","wikidata":"https://www.wikidata.org/wiki/Q5244960","display_name":"De novo transcriptome assembly","level":5,"score":0.4857902526855469},{"id":"https://openalex.org/C36823959","wikidata":"https://www.wikidata.org/wiki/Q373027","display_name":"Exon","level":3,"score":0.4521888792514801},{"id":"https://openalex.org/C179926584","wikidata":"https://www.wikidata.org/wiki/Q207714","display_name":"Transcription (linguistics)","level":2,"score":0.4390451908111572},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.425869882106781},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.33218133449554443},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.32401418685913086},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002531","descriptor_name":"Cerebellum","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002531","descriptor_name":"Cerebellum","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002531","descriptor_name":"Cerebellum","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002679","descriptor_name":"Pan troglodytes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002679","descriptor_name":"Pan troglodytes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002679","descriptor_name":"Pan troglodytes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008251","descriptor_name":"Macaca","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008251","descriptor_name":"Macaca","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008251","descriptor_name":"Macaca","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012091","descriptor_name":"Repetitive Sequences, Nucleic Acid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012091","descriptor_name":"Repetitive Sequences, Nucleic Acid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012091","descriptor_name":"Repetitive Sequences, Nucleic Acid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021901","descriptor_name":"DNA, Intergenic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D021901","descriptor_name":"DNA, Intergenic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D021901","descriptor_name":"DNA, Intergenic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":9,"locations":[{"id":"doi:10.1371/journal.pcbi.1000843","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1000843","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1000843&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:20617162","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20617162","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:edoc.mdc-berlin.de:11161","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400224","display_name":"MDC Repository (Max-Delbrueck-Center for Molecular Medicine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:0b270aaed1034902b72c4fba22c67a6c","is_oa":true,"landing_page_url":"https://doaj.org/article/0b270aaed1034902b72c4fba22c67a6c","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 6, p e1000843 (2010)","raw_type":"article"},{"id":"pmh:oai:edoc.mpg.de:479801","is_oa":false,"landing_page_url":"http://edoc.mpg.de/479801","pdf_url":null,"source":{"id":"https://openalex.org/S4406922265","display_name":"Max Planck Institute for Plasma Physics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, v.6, 1-10 (2010)","raw_type":"Article"},{"id":"pmh:oai:figshare.com:article/142848","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Intergenic_and_Repeat_Transcription_in_Human_Chimpanzee_and_Macaque_Brains_Measured_by_RNA_Seq/142848","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:open.metu.edu.tr:11511/48233","is_oa":true,"landing_page_url":"https://hdl.handle.net/11511/48233","pdf_url":null,"source":{"id":"https://openalex.org/S4306402495","display_name":"OpenMETU (Middle East Technical University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I201799495","host_organization_name":"Middle East Technical University","host_organization_lineage":["https://openalex.org/I201799495"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2895644","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2895644","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:pure.mpg.de:item_1552689","is_oa":true,"landing_page_url":"http://hdl.handle.net/11858/00-001M-0000-000F-F5C7-7","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1000843","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1000843","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1000843&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.6299999952316284}],"awards":[{"id":"https://openalex.org/G4757331301","display_name":null,"funder_award_id":"KSCX2-YW-R","funder_id":"https://openalex.org/F4320321133","funder_display_name":"Chinese Academy of Sciences"}],"funders":[{"id":"https://openalex.org/F4320321133","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35"},{"id":"https://openalex.org/F4320321540","display_name":"Ministry of Science and Technology of the People's Republic of China","ror":"https://ror.org/027s68j25"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2008944922.pdf","grobid_xml":"https://content.openalex.org/works/W2008944922.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W1689369637","https://openalex.org/W1786194602","https://openalex.org/W1964727443","https://openalex.org/W1978083828","https://openalex.org/W1999746344","https://openalex.org/W2011920499","https://openalex.org/W2014279841","https://openalex.org/W2015553373","https://openalex.org/W2028106094","https://openalex.org/W2029747645","https://openalex.org/W2035095433","https://openalex.org/W2040618467","https://openalex.org/W2047285578","https://openalex.org/W2063151549","https://openalex.org/W2087377443","https://openalex.org/W2093477772","https://openalex.org/W2102120094","https://openalex.org/W2103017472","https://openalex.org/W2103320667","https://openalex.org/W2104806799","https://openalex.org/W2108871359","https://openalex.org/W2110662009","https://openalex.org/W2112132489","https://openalex.org/W2114104545","https://openalex.org/W2120865735","https://openalex.org/W2128969076","https://openalex.org/W2131581981","https://openalex.org/W2139395239","https://openalex.org/W2139555417","https://openalex.org/W2139760555","https://openalex.org/W2144137532","https://openalex.org/W2144779451","https://openalex.org/W2145191876","https://openalex.org/W2147881874","https://openalex.org/W2154431984","https://openalex.org/W2158826174","https://openalex.org/W2159482845","https://openalex.org/W2168783124","https://openalex.org/W2169685494","https://openalex.org/W2740984310","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W2083833254","https://openalex.org/W1978448871","https://openalex.org/W2068962637","https://openalex.org/W1995725827","https://openalex.org/W2082856106","https://openalex.org/W1973164572","https://openalex.org/W1988731563","https://openalex.org/W2608025469","https://openalex.org/W2289108004","https://openalex.org/W2070709105"],"abstract_inverted_index":{"Transcription":[0],"is":[1,42],"the":[2,18,28,31,38,53,93,118,126,135,199],"first":[3],"step":[4],"connecting":[5],"genetic":[6],"information":[7],"with":[8,172],"an":[9],"organism's":[10],"phenotype.":[11],"While":[12],"expression":[13,128,179],"of":[14,33,37,57,69,92,144,151,203,216],"annotated":[15,74],"genes":[16,153],"in":[17,117,158,198,209],"human":[19,119,200],"brain":[20,95],"has":[21],"been":[22],"characterized":[23],"extensively,":[24],"our":[25],"knowledge":[26],"about":[27],"scope":[29],"and":[30,60,76,86,110,133,154,183,212],"conservation":[32],"transcripts":[34,71,82,146,176,196,205],"located":[35],"outside":[36],"known":[39,152],"genes'":[40],"boundaries":[41],"limited.":[43],"Here,":[44],"we":[45,108,163],"use":[46],"high-throughput":[47],"transcriptome":[48,56,167],"sequencing":[49],"(RNA-Seq)":[50],"to":[51,73,78,214],"characterize":[52,111],"total":[54,94],"non-ribosomal":[55,70],"human,":[58],"chimpanzee,":[59],"rhesus":[61],"macaque":[62],"brain.":[63,120,201],"In":[64,104],"all":[65],"species,":[66],"only":[67],"20-28%":[68],"correspond":[72],"exons":[75,184],"20-23%":[77],"introns.":[79],"By":[80],"contrast,":[81],"originating":[83],"within":[84],"intronic":[85],"intergenic":[87,106,175],"repetitive":[88],"sequences":[89],"constitute":[90],"40-48%":[91],"transcriptome.":[96],"Notably,":[97],"some":[98],"repeat":[99],"families":[100],"show":[101,164,177,185,189],"elevated":[102],"transcription.":[103],"non-repetitive":[105],"regions,":[107],"identify":[109],"1,093":[112],"distinct":[113],"regions":[114,122],"highly":[115],"expressed":[116],"These":[121],"are":[123],"conserved":[124,195],"at":[125,134],"RNA":[127],"level":[129,138],"across":[130,139],"primates":[131],"studied":[132],"DNA":[136],"sequence":[137],"mammals.":[140],"A":[141],"large":[142],"proportion":[143],"these":[145,204],"(20%)":[147],"represents":[148],"3'UTR":[149],"extensions":[150],"may":[155,206],"play":[156,207],"roles":[157,208],"alternative":[159],"microRNA-directed":[160],"regulation.":[161],"Finally,":[162],"that":[165,190],"while":[166],"divergence":[168],"between":[169],"species":[170,182],"increases":[171],"evolutionary":[173,194],"time,":[174],"more":[178],"differences":[180],"among":[181],"less.":[186],"Our":[187],"results":[188],"many":[191],"yet":[192],"uncharacterized":[193],"exist":[197],"Some":[202],"transcriptional":[210],"regulation":[211],"contribute":[213],"evolution":[215],"human-specific":[217],"phenotypic":[218],"traits.":[219]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":9},{"year":2013,"cited_by_count":10},{"year":2012,"cited_by_count":14}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
