{"id":"https://openalex.org/W1518177075","doi":"https://doi.org/10.1371/journal.pcbi.1000731","title":"A Stevedore's Protein Knot","display_name":"A Stevedore's Protein Knot","publication_year":2010,"publication_date":"2010-04-01","ids":{"openalex":"https://openalex.org/W1518177075","doi":"https://doi.org/10.1371/journal.pcbi.1000731","mag":"1518177075","pmid":"https://pubmed.ncbi.nlm.nih.gov/20369018"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1000731","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1000731","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1000731&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"book-chapter","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1000731&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032961562","display_name":"Daniel B\u00f6linger","orcid":null},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Daniel B\u00f6linger","raw_affiliation_strings":["Department of Physics, Johannes Gutenberg-Universit\u00e4t Mainz, Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Physics, Johannes Gutenberg-Universit\u00e4t Mainz, Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013867366","display_name":"Joanna I. Su\u0142kowska","orcid":"https://orcid.org/0000-0003-2452-0724"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joanna I. Su\u0142kowska","raw_affiliation_strings":["CTBP, University of California San Diego, San Diego, California, United States of America"],"affiliations":[{"raw_affiliation_string":"CTBP, University of California San Diego, San Diego, California, United States of America","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070039682","display_name":"Hsiao\u2010Ping Hsu","orcid":"https://orcid.org/0000-0002-8271-5346"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hsiao-Ping Hsu","raw_affiliation_strings":["Department of Physics, Johannes Gutenberg-Universit\u00e4t Mainz, Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Physics, Johannes Gutenberg-Universit\u00e4t Mainz, Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017406892","display_name":"Leonid A. Mirny","orcid":"https://orcid.org/0000-0002-0785-5410"},"institutions":[{"id":"https://openalex.org/I4210092658","display_name":"Harvard\u2013MIT Division of Health Sciences and Technology","ror":"https://ror.org/00jjeh629","country_code":"US","type":"education","lineage":["https://openalex.org/I4210092658"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Leonid A. Mirny","raw_affiliation_strings":["Harvard-MIT Division of Health Sciences and Technology, Cambridge, Massachusetts, United States of America"],"affiliations":[{"raw_affiliation_string":"Harvard-MIT Division of Health Sciences and Technology, Cambridge, Massachusetts, United States of America","institution_ids":["https://openalex.org/I4210092658"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074250605","display_name":"Mehran Kardar","orcid":"https://orcid.org/0000-0002-1112-5912"},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mehran Kardar","raw_affiliation_strings":["Department of Physics, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Physics, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America","institution_ids":["https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030987631","display_name":"Jos\u00e9 N. Onuchic","orcid":"https://orcid.org/0000-0002-9448-0388"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]},{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 N. Onuchic","raw_affiliation_strings":["CTBP, University of California San Diego, San Diego, California, United States of America","Johannes Gutenberg - University of Mainz"],"affiliations":[{"raw_affiliation_string":"CTBP, University of California San Diego, San Diego, California, United States of America","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Johannes Gutenberg - University of Mainz","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014387498","display_name":"Peter Virnau","orcid":"https://orcid.org/0000-0003-2340-3884"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Peter Virnau","raw_affiliation_strings":["Department of Physics, Johannes Gutenberg-Universit\u00e4t Mainz, Mainz, Germany","Johannes Gutenberg - University of Mainz"],"affiliations":[{"raw_affiliation_string":"Department of Physics, Johannes Gutenberg-Universit\u00e4t Mainz, Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]},{"raw_affiliation_string":"Johannes Gutenberg - University of Mainz","institution_ids":["https://openalex.org/I197323543"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5014387498"],"corresponding_institution_ids":["https://openalex.org/I197323543"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.0,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.04804299,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"6","issue":"4","first_page":"e1000731","last_page":"e1000731"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9878000020980835,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9878000020980835,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9764999747276306,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.9679999947547913,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/knot","display_name":"Knot (papermaking)","score":0.5994072556495667},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.46712714433670044},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.4131240248680115},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.39380091428756714},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.3240862488746643},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2821369171142578},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2778737246990204},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1185961365699768}],"concepts":[{"id":"https://openalex.org/C2779863119","wikidata":"https://www.wikidata.org/wiki/Q6423048","display_name":"Knot (papermaking)","level":2,"score":0.5994072556495667},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.46712714433670044},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.4131240248680115},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.39380091428756714},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.3240862488746643},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2821369171142578},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2778737246990204},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1185961365699768},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C42360764","wikidata":"https://www.wikidata.org/wiki/Q83588","display_name":"Chemical engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006867","descriptor_name":"Hydrolases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006867","descriptor_name":"Hydrolases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006867","descriptor_name":"Hydrolases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006867","descriptor_name":"Hydrolases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006867","descriptor_name":"Hydrolases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006867","descriptor_name":"Hydrolases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006867","descriptor_name":"Hydrolases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006867","descriptor_name":"Hydrolases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":10,"locations":[{"id":"doi:10.1371/journal.pcbi.1000731","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1000731","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1000731&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:20369018","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20369018","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:dash.harvard.edu:1/5024729","is_oa":true,"landing_page_url":"http://nrs.harvard.edu/urn-3:HUL.InstRepos:5024729","pdf_url":null,"source":{"id":"https://openalex.org/S4306401540","display_name":"Digital Access to Scholarship at Harvard (DASH) (Harvard University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I136199984","host_organization_name":"Harvard University","host_organization_lineage":["https://openalex.org/I136199984"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.190.7225","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.190.7225","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://ctbp.ucsd.edu/pubs/pdf/638.pdf","raw_type":"text"},{"id":"pmh:oai:RePEc:plo:pcbi00:1000731","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1000731","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:3159b9c99a76420d9edcc7c7d30569f6","is_oa":true,"landing_page_url":"https://doaj.org/article/3159b9c99a76420d9edcc7c7d30569f6","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 6, Iss 4, p e1000731 (2010)","raw_type":"article"},{"id":"pmh:oai:dspace.mit.edu:1721.1/57578","is_oa":true,"landing_page_url":"http://hdl.handle.net/1721.1/57578","pdf_url":null,"source":{"id":"https://openalex.org/S4306400425","display_name":"DSpace@MIT (Massachusetts Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I63966007","host_organization_name":"Massachusetts Institute of Technology","host_organization_lineage":["https://openalex.org/I63966007"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS","raw_type":"http://purl.org/eprint/type/JournalArticle"},{"id":"pmh:oai:figshare.com:article/143976","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/A_Stevedore_s_Protein_Knot/143976","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:pubmedcentral.nih.gov:2848546","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2848546","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"mag:1518177075","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1000731","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1000731","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1000731&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.5699999928474426,"id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G2681514762","display_name":"The Energy Landscapes of Protein Folding and Function: Connecting Theory and Experiments","funder_award_id":"0543906","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3747673514","display_name":null,"funder_award_id":"PHY-0822283","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6200803884","display_name":null,"funder_award_id":"PHY-0822283","funder_id":"https://openalex.org/F4320332774","funder_display_name":"Center for Theoretical Biological Physics"},{"id":"https://openalex.org/G6776192592","display_name":"Center for Theoretical Biological Physics","funder_award_id":"0822283","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7066554977","display_name":null,"funder_award_id":"MCB-0543906","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7828383911","display_name":null,"funder_award_id":"DMR-08-03315","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G84140598","display_name":null,"funder_award_id":"NSF-MCB","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332774","display_name":"Center for Theoretical Biological Physics","ror":"https://ror.org/008zs3103"},{"id":"https://openalex.org/F4320337367","display_name":"Division of Materials Research","ror":"https://ror.org/01pc7k308"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1518177075.pdf","grobid_xml":"https://content.openalex.org/works/W1518177075.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1530495800","https://openalex.org/W1964115711","https://openalex.org/W1965057964","https://openalex.org/W1969554454","https://openalex.org/W1979896410","https://openalex.org/W1980676977","https://openalex.org/W1983357705","https://openalex.org/W2008798066","https://openalex.org/W2022652120","https://openalex.org/W2023765957","https://openalex.org/W2027071679","https://openalex.org/W2029667189","https://openalex.org/W2033430755","https://openalex.org/W2046469792","https://openalex.org/W2046821309","https://openalex.org/W2050679015","https://openalex.org/W2060804379","https://openalex.org/W2065864578","https://openalex.org/W2070349383","https://openalex.org/W2070816181","https://openalex.org/W2085277871","https://openalex.org/W2090627622","https://openalex.org/W2093161894","https://openalex.org/W2109988831","https://openalex.org/W2125138250","https://openalex.org/W2130479394","https://openalex.org/W2134239230","https://openalex.org/W2135452602","https://openalex.org/W2136624897","https://openalex.org/W2149355630","https://openalex.org/W2154083418","https://openalex.org/W2158397714","https://openalex.org/W2162739292","https://openalex.org/W2171755502","https://openalex.org/W2963939548","https://openalex.org/W4233106844"],"related_works":[],"abstract_inverted_index":{"Protein":[0,59],"knots,":[1],"mostly":[2],"regarded":[3],"as":[4,11,103,125],"intriguing":[5],"oddities,":[6],"are":[7],"gradually":[8],"being":[9],"recognized":[10],"significant":[12],"structural":[13],"motifs.":[14],"Seven":[15],"distinctly":[16],"knotted":[17],"folds":[18],"have":[19,41],"already":[20],"been":[21],"identified.":[22],"It":[23],"is":[24,99],"by":[25,150],"and":[26,35,39,67,145],"large":[27],"unclear":[28],"how":[29,127],"these":[30],"exceptional":[31],"structures":[32,55],"actually":[33],"fold,":[34],"only":[36,111],"recently,":[37],"experiments":[38],"simulations":[40,139],"begun":[42],"to":[43,57,71,126],"shed":[44],"some":[45],"light":[46],"on":[47],"this":[48,134],"issue.":[49],"In":[50],"checking":[51],"the":[52,58,64,68,119,152],"new":[53],"protein":[54,97,106],"submitted":[56],"Data":[60],"Bank,":[61],"we":[62,136],"encountered":[63],"most":[65],"complex":[66],"smallest":[69,96],"knots":[70],"date:":[72],"A":[73],"recently":[74],"uncovered":[75,146],"alpha-haloacid":[76],"dehalogenase":[77],"structure":[78],"contains":[79],"a":[80,85,90,93,123,141,147,156],"knot":[81,98,121,153],"with":[82,140],"six":[83],"crossings,":[84],"so-called":[86],"Stevedore":[87,120],"knot,":[88],"in":[89,101,155],"projection":[91],"onto":[92],"plane.":[94],"The":[95,115],"present":[100],"an":[102],"yet":[104],"unclassified":[105],"fragment":[107],"that":[108],"consists":[109],"of":[110,118],"92":[112],"amino":[113],"acids.":[114],"topological":[116],"complexity":[117],"presents":[122],"puzzle":[124],"it":[128],"could":[129],"possibly":[130],"fold.":[131],"To":[132],"unravel":[133],"enigma,":[135],"performed":[137],"folding":[138],"structure-based":[142],"coarse-grained":[143],"model":[144],"possible":[148],"mechanism":[149],"which":[151],"forms":[154],"single":[157],"loop":[158],"flip.":[159]},"counts_by_year":[{"year":2021,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
