{"id":"https://openalex.org/W2084168100","doi":"https://doi.org/10.1371/journal.pcbi.1000443","title":"Semantic Similarity in Biomedical Ontologies","display_name":"Semantic Similarity in Biomedical Ontologies","publication_year":2009,"publication_date":"2009-07-30","ids":{"openalex":"https://openalex.org/W2084168100","doi":"https://doi.org/10.1371/journal.pcbi.1000443","mag":"2084168100","pmid":"https://pubmed.ncbi.nlm.nih.gov/19649320"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1000443","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1000443","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1000443&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1000443&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034898355","display_name":"C\u00e1tia Pesquita","orcid":"https://orcid.org/0000-0002-1847-9393"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Catia Pesquita","raw_affiliation_strings":["LaSIGE, Faculty of Sciences, University of Lisboa, Lisboa, Portugal. cpesquita@xldb.di.fc.ul.pt","LaSIGE, Faculty of Sciences, University of Lisboa, Lisboa, Portugal"],"affiliations":[{"raw_affiliation_string":"LaSIGE, Faculty of Sciences, University of Lisboa, Lisboa, Portugal. cpesquita@xldb.di.fc.ul.pt","institution_ids":["https://openalex.org/I141596103"]},{"raw_affiliation_string":"LaSIGE, Faculty of Sciences, University of Lisboa, Lisboa, Portugal","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072979086","display_name":"Daniel Faria","orcid":"https://orcid.org/0000-0003-1511-277X"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Daniel Faria","raw_affiliation_strings":["LaSIGE, Faculty of Sciences, University of Lisboa, Lisboa, Portugal,","LaSIGE, Faculty of Sciences, University of Lisboa, Lisboa, Portugal"],"affiliations":[{"raw_affiliation_string":"LaSIGE, Faculty of Sciences, University of Lisboa, Lisboa, Portugal,","institution_ids":["https://openalex.org/I141596103"]},{"raw_affiliation_string":"LaSIGE, Faculty of Sciences, University of Lisboa, Lisboa, Portugal","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076982064","display_name":"Andr\u00e9 O. Falc\u00e3o","orcid":"https://orcid.org/0000-0002-3588-8746"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Andr\u00e9 O. Falc\u00e3o","raw_affiliation_strings":["LaSIGE, Faculty of Sciences, University of Lisboa, Lisboa, Portugal"],"affiliations":[{"raw_affiliation_string":"LaSIGE, Faculty of Sciences, University of Lisboa, Lisboa, Portugal","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059579347","display_name":"Phillip Lord","orcid":"https://orcid.org/0000-0002-4699-6769"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Phillip Lord","raw_affiliation_strings":["School of Computing Science, Newcastle University, Newcastle-upon-Tyne, United Kingdom","School of Computing Science, Newcastle University, Newcastle upon Tyne, United Kingdom#TAB#"],"affiliations":[{"raw_affiliation_string":"School of Computing Science, Newcastle University, Newcastle-upon-Tyne, United Kingdom","institution_ids":["https://openalex.org/I84884186"]},{"raw_affiliation_string":"School of Computing Science, Newcastle University, Newcastle upon Tyne, United Kingdom#TAB#","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014333753","display_name":"Francisco M. Couto","orcid":"https://orcid.org/0000-0003-0627-1496"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Francisco M. Couto","raw_affiliation_strings":["LaSIGE, Faculty of Sciences, University of Lisboa, Lisboa, Portugal,","LaSIGE, Faculty of Sciences, University of Lisboa, Lisboa, Portugal"],"affiliations":[{"raw_affiliation_string":"LaSIGE, Faculty of Sciences, University of Lisboa, Lisboa, Portugal,","institution_ids":["https://openalex.org/I141596103"]},{"raw_affiliation_string":"LaSIGE, Faculty of Sciences, University of Lisboa, Lisboa, Portugal","institution_ids":["https://openalex.org/I141596103"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5034898355"],"corresponding_institution_ids":["https://openalex.org/I141596103"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":18.197,"has_fulltext":true,"cited_by_count":795,"citation_normalized_percentile":{"value":0.99602794,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"5","issue":"7","first_page":"e1000443","last_page":"e1000443"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9830999970436096,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/semantic-similarity","display_name":"Semantic similarity","score":0.8120434284210205},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7475882172584534},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.603963315486908},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5294325351715088},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.5178177952766418},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.46711501479148865},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4363344609737396},{"id":"https://openalex.org/keywords/semantic-integration","display_name":"Semantic integration","score":0.41078630089759827},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.41053104400634766},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3806409239768982},{"id":"https://openalex.org/keywords/semantic-computing","display_name":"Semantic computing","score":0.3489893674850464},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.3075529932975769},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.27188223600387573},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2639803886413574},{"id":"https://openalex.org/keywords/ontology-alignment","display_name":"Ontology alignment","score":0.24563825130462646}],"concepts":[{"id":"https://openalex.org/C130318100","wikidata":"https://www.wikidata.org/wiki/Q2268914","display_name":"Semantic similarity","level":2,"score":0.8120434284210205},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7475882172584534},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.603963315486908},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5294325351715088},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.5178177952766418},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.46711501479148865},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4363344609737396},{"id":"https://openalex.org/C110903229","wikidata":"https://www.wikidata.org/wiki/Q7449064","display_name":"Semantic integration","level":4,"score":0.41078630089759827},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.41053104400634766},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3806409239768982},{"id":"https://openalex.org/C511149849","wikidata":"https://www.wikidata.org/wiki/Q7449051","display_name":"Semantic computing","level":3,"score":0.3489893674850464},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.3075529932975769},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.27188223600387573},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2639803886413574},{"id":"https://openalex.org/C98893333","wikidata":"https://www.wikidata.org/wiki/Q4339878","display_name":"Ontology alignment","level":4,"score":0.24563825130462646},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1000443","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1000443","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1000443&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:19649320","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19649320","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:RePEc:plo:pcbi00:1000443","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1000443","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:84a7f00e12144713b8e4373bca187744","is_oa":true,"landing_page_url":"https://doaj.org/article/84a7f00e12144713b8e4373bca187744","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 5, Iss 7, p e1000443 (2009)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2712090","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2712090","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:repositorio.ul.pt:10451/14785","is_oa":true,"landing_page_url":"http://hdl.handle.net/10451/14785","pdf_url":null,"source":{"id":"https://openalex.org/S4306402433","display_name":"Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journal article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1000443","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1000443","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1000443&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2084168100.pdf","grobid_xml":"https://content.openalex.org/works/W2084168100.grobid-xml"},"referenced_works_count":84,"referenced_works":["https://openalex.org/W1495712943","https://openalex.org/W1518614040","https://openalex.org/W1527927437","https://openalex.org/W1535449900","https://openalex.org/W1569415500","https://openalex.org/W1647729745","https://openalex.org/W1668989518","https://openalex.org/W1818881584","https://openalex.org/W1856379730","https://openalex.org/W1917285183","https://openalex.org/W1958717431","https://openalex.org/W1980948656","https://openalex.org/W1985307298","https://openalex.org/W1986566140","https://openalex.org/W1989034333","https://openalex.org/W1991537543","https://openalex.org/W2007038646","https://openalex.org/W2017936606","https://openalex.org/W2034784092","https://openalex.org/W2046482984","https://openalex.org/W2055867223","https://openalex.org/W2061615066","https://openalex.org/W2073193878","https://openalex.org/W2079665010","https://openalex.org/W2079691202","https://openalex.org/W2085032889","https://openalex.org/W2087739686","https://openalex.org/W2090431245","https://openalex.org/W2091978351","https://openalex.org/W2097624459","https://openalex.org/W2097795961","https://openalex.org/W2098013039","https://openalex.org/W2100827857","https://openalex.org/W2100935296","https://openalex.org/W2102037268","https://openalex.org/W2103291381","https://openalex.org/W2108491719","https://openalex.org/W2109047523","https://openalex.org/W2117805756","https://openalex.org/W2119027485","https://openalex.org/W2120155048","https://openalex.org/W2121105117","https://openalex.org/W2121343862","https://openalex.org/W2123318061","https://openalex.org/W2123761649","https://openalex.org/W2123891919","https://openalex.org/W2126225210","https://openalex.org/W2127536416","https://openalex.org/W2127563440","https://openalex.org/W2128049108","https://openalex.org/W2130962401","https://openalex.org/W2131323902","https://openalex.org/W2132290594","https://openalex.org/W2132819807","https://openalex.org/W2133681442","https://openalex.org/W2134226301","https://openalex.org/W2134380650","https://openalex.org/W2134868174","https://openalex.org/W2135526239","https://openalex.org/W2136480620","https://openalex.org/W2136957665","https://openalex.org/W2141623487","https://openalex.org/W2144014661","https://openalex.org/W2149911752","https://openalex.org/W2156223899","https://openalex.org/W2157911533","https://openalex.org/W2158057897","https://openalex.org/W2159348493","https://openalex.org/W2161033884","https://openalex.org/W2166023446","https://openalex.org/W2168264491","https://openalex.org/W2169896388","https://openalex.org/W2170659294","https://openalex.org/W2172136887","https://openalex.org/W2174598314","https://openalex.org/W2950225692","https://openalex.org/W2951798058","https://openalex.org/W6636975626","https://openalex.org/W6639072066","https://openalex.org/W6672347256","https://openalex.org/W6678865120","https://openalex.org/W6684956164","https://openalex.org/W6764209848","https://openalex.org/W7033687144"],"related_works":["https://openalex.org/W3134365128","https://openalex.org/W2133831373","https://openalex.org/W2044128863","https://openalex.org/W1966422074","https://openalex.org/W2114077504","https://openalex.org/W2388928357","https://openalex.org/W2182534007","https://openalex.org/W1979325497","https://openalex.org/W2569612694","https://openalex.org/W2358534410"],"abstract_inverted_index":{"In":[0],"recent":[1],"years,":[2],"ontologies":[3,67,127,199],"have":[4,73],"become":[5,89],"a":[6,18,90,216],"mainstream":[7],"topic":[8],"in":[9,55,76,272],"biomedical":[10,66,99,126,174,180,222,273],"research.":[11,175,274],"When":[12],"biological":[13],"entities":[14,51],"are":[15,200,239,247],"described":[16],"using":[17],"common":[19],"schema,":[20],"such":[21,101],"as":[22,102,265,267],"an":[23],"ontology,":[24],"they":[25,136],"can":[26,182,254],"be":[27],"compared":[28],"by":[29,52,221],"means":[30],"of":[31,36,47,57,62,112,155,163,171,218,226,233],"their":[32,58,130,156,197,209],"annotations.":[33,59],"This":[34,176],"type":[35],"comparison":[37],"is":[38,68,213,270],"called":[39],"semantic":[40,63,121,164,185,244],"similarity,":[41],"since":[42],"it":[43],"assesses":[44],"the":[45,53,77,95,134,153,160,192],"degree":[46],"relatedness":[48],"between":[49],"two":[50],"similarity":[54,64,87,122,165,186,245,269],"meaning":[56],"The":[60],"application":[61,225],"to":[65,125,133,173,230,256],"recent;":[69],"nevertheless,":[70],"several":[71],"studies":[72,100,150],"been":[74],"published":[75],"last":[78],"few":[79],"years":[80],"describing":[81],"and":[82,110,115,128,141,151,167,188,206,208,224,236,262],"evaluating":[83],"diverse":[84],"approaches.":[85],"Semantic":[86],"has":[88],"valuable":[91],"tool":[92],"for":[93,196,211],"validating":[94],"results":[96],"drawn":[97],"from":[98,184],"gene":[103,105,117],"clustering,":[104],"expression":[106],"data":[107],"analysis,":[108],"prediction":[109],"validation":[111],"molecular":[113],"interactions,":[114],"disease":[116],"prioritization.":[118],"We":[119,145,158],"review":[120],"measures":[123,187,246],"applied":[124],"propose":[129],"classification":[131],"according":[132],"strategies":[135],"employ:":[137],"node-based":[138],"versus":[139,143],"edge-based":[140],"pairwise":[142],"groupwise.":[144],"also":[146],"present":[147],"comparative":[148],"assessment":[149],"discuss":[152],"implications":[154],"results.":[157],"survey":[159],"existing":[161],"implementations":[162],"measures,":[166],"we":[168,253],"describe":[169],"examples":[170],"applications":[172],"will":[177],"clarify":[178],"how":[179],"researchers":[181],"benefit":[183],"help":[189],"them":[190,258],"choose":[191],"approach":[193],"most":[194],"suitable":[195],"studies.Biomedical":[198],"evolving":[201],"toward":[202],"increased":[203],"coverage,":[204],"formality,":[205],"integration,":[207],"use":[210],"annotation":[212,228],"increasingly":[214],"becoming":[215,264],"focus":[217],"both":[219],"effort":[220],"experts":[223],"automated":[227],"procedures":[229],"create":[231],"corpora":[232],"higher":[234],"quality":[235],"completeness":[237],"than":[238],"currently":[240],"available.":[241],"Given":[242],"that":[243],"directly":[248],"dependent":[249],"on":[250],"these":[251],"evolutions,":[252],"expect":[255],"see":[257],"gaining":[259],"more":[260],"relevance":[261],"even":[263],"essential":[266],"sequence":[268],"today":[271]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":25},{"year":2024,"cited_by_count":30},{"year":2023,"cited_by_count":27},{"year":2022,"cited_by_count":49},{"year":2021,"cited_by_count":37},{"year":2020,"cited_by_count":54},{"year":2019,"cited_by_count":42},{"year":2018,"cited_by_count":54},{"year":2017,"cited_by_count":51},{"year":2016,"cited_by_count":64},{"year":2015,"cited_by_count":71},{"year":2014,"cited_by_count":78},{"year":2013,"cited_by_count":72},{"year":2012,"cited_by_count":58}],"updated_date":"2026-04-07T14:57:38.498316","created_date":"2025-10-10T00:00:00"}
