{"id":"https://openalex.org/W2001008407","doi":"https://doi.org/10.1371/journal.pcbi.1000295","title":"Rapid Sampling of Molecular Motions with Prior Information Constraints","display_name":"Rapid Sampling of Molecular Motions with Prior Information Constraints","publication_year":2009,"publication_date":"2009-02-26","ids":{"openalex":"https://openalex.org/W2001008407","doi":"https://doi.org/10.1371/journal.pcbi.1000295","mag":"2001008407","pmid":"https://pubmed.ncbi.nlm.nih.gov/19247429"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1000295","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1000295","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1000295&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1000295&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007097283","display_name":"Barak Raveh","orcid":"https://orcid.org/0000-0002-2073-3936"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]},{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Barak Raveh","raw_affiliation_strings":["Department of Molecular Genetics and Biotechnology, Institute of Medical Research, Hadassah Medical School, The Hebrew University, Jerusalem, Israel","Department of Molecular Genetics and Biotechnology, Institute of Medical\n                    Research, Hadassah Medical School, The Hebrew University, Jerusalem,\n                Israel","School of Computer Science, Tel-Aviv University, Tel Aviv,\n                Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Genetics and Biotechnology, Institute of Medical Research, Hadassah Medical School, The Hebrew University, Jerusalem, Israel","institution_ids":["https://openalex.org/I197251160"]},{"raw_affiliation_string":"Department of Molecular Genetics and Biotechnology, Institute of Medical\n                    Research, Hadassah Medical School, The Hebrew University, Jerusalem,\n                Israel","institution_ids":["https://openalex.org/I197251160"]},{"raw_affiliation_string":"School of Computer Science, Tel-Aviv University, Tel Aviv,\n                Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025089277","display_name":"Angela Enosh","orcid":null},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Angela Enosh","raw_affiliation_strings":["Israel","School of Computer Science, Tel-Aviv University, Tel Aviv","School of Computer Science, Tel-Aviv University, Tel Aviv,\n                Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Israel","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science, Tel-Aviv University, Tel Aviv","institution_ids":["https://openalex.org/I16391192"]},{"raw_affiliation_string":"School of Computer Science, Tel-Aviv University, Tel Aviv,\n                Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034150494","display_name":"Ora Schueler\u2010Furman","orcid":"https://orcid.org/0000-0002-1624-0362"},"institutions":[{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]},{"id":"https://openalex.org/I2799899409","display_name":"Hadassah Medical Center","ror":"https://ror.org/01cqmqj90","country_code":"IL","type":"healthcare","lineage":["https://openalex.org/I2799899409"]},{"id":"https://openalex.org/I4210131892","display_name":"Institute of Molecular Genetics","ror":"https://ror.org/03apz2q12","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210129690","https://openalex.org/I4210131892"]}],"countries":["IL","RU"],"is_corresponding":true,"raw_author_name":"Ora Schueler-Furman","raw_affiliation_strings":["Department of Molecular Genetics and Biotechnology, Institute of Medical","Israel","Research, Hadassah Medical School, The Hebrew University, Jerusalem","Department of Molecular Genetics and Biotechnology, Institute of Medical\n                    Research, Hadassah Medical School, The Hebrew University, Jerusalem,\n                Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Genetics and Biotechnology, Institute of Medical","institution_ids":["https://openalex.org/I4210131892"]},{"raw_affiliation_string":"Israel","institution_ids":[]},{"raw_affiliation_string":"Research, Hadassah Medical School, The Hebrew University, Jerusalem","institution_ids":["https://openalex.org/I197251160","https://openalex.org/I2799899409"]},{"raw_affiliation_string":"Department of Molecular Genetics and Biotechnology, Institute of Medical\n                    Research, Hadassah Medical School, The Hebrew University, Jerusalem,\n                Israel","institution_ids":["https://openalex.org/I197251160"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038503253","display_name":"Dan Halperin","orcid":"https://orcid.org/0000-0002-3345-3765"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Dan Halperin","raw_affiliation_strings":["Israel","School of Computer Science, Tel-Aviv University, Tel Aviv","School of Computer Science, Tel-Aviv University, Tel Aviv,\n                Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Israel","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science, Tel-Aviv University, Tel Aviv","institution_ids":["https://openalex.org/I16391192"]},{"raw_affiliation_string":"School of Computer Science, Tel-Aviv University, Tel Aviv,\n                Israel","institution_ids":["https://openalex.org/I16391192"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5034150494","https://openalex.org/A5038503253"],"corresponding_institution_ids":["https://openalex.org/I16391192","https://openalex.org/I197251160","https://openalex.org/I2799899409","https://openalex.org/I4210131892"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":2.519,"has_fulltext":true,"cited_by_count":64,"citation_normalized_percentile":{"value":0.8927245,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"5","issue":"2","first_page":"e1000295","last_page":"e1000295"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.978600025177002,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9628000259399414,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6827466487884521},{"id":"https://openalex.org/keywords/intuition","display_name":"Intuition","score":0.6610530614852905},{"id":"https://openalex.org/keywords/conformational-ensembles","display_name":"Conformational ensembles","score":0.4675264358520508},{"id":"https://openalex.org/keywords/motion","display_name":"Motion (physics)","score":0.4661411643028259},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.4173937141895294},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4046650528907776},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3902232348918915},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.38152197003364563},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3327888250350952},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.32814645767211914},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.16181033849716187},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.10034006834030151}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6827466487884521},{"id":"https://openalex.org/C132010649","wikidata":"https://www.wikidata.org/wiki/Q189222","display_name":"Intuition","level":2,"score":0.6610530614852905},{"id":"https://openalex.org/C2777936996","wikidata":"https://www.wikidata.org/wiki/Q17148461","display_name":"Conformational ensembles","level":3,"score":0.4675264358520508},{"id":"https://openalex.org/C104114177","wikidata":"https://www.wikidata.org/wiki/Q79782","display_name":"Motion (physics)","level":2,"score":0.4661411643028259},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.4173937141895294},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4046650528907776},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3902232348918915},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.38152197003364563},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3327888250350952},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.32814645767211914},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.16181033849716187},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.10034006834030151},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1000295","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1000295","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1000295&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:19247429","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19247429","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:RePEc:plo:pcbi00:1000295","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1000295","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:32573e12464a40a8a863bffe9bd70563","is_oa":true,"landing_page_url":"https://doaj.org/article/32573e12464a40a8a863bffe9bd70563","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 5, Iss 2, p e1000295 (2009)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/148470","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Rapid_Sampling_of_Molecular_Motions_with_Prior_Information___Constraints/148470","pdf_url":null,"source":{"id":"https://openalex.org/S4306402621","display_name":"INDIGO (University of Illinois at Chicago)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I39422238","host_organization_name":"University of Illinois Chicago","host_organization_lineage":["https://openalex.org/I39422238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:pubmedcentral.nih.gov:2637990","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2637990","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1000295","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1000295","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1000295&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G222868327","display_name":null,"funder_award_id":"Young Scientists Program 2159-1709.3/2006","funder_id":"https://openalex.org/F4320320947","funder_display_name":"German-Israeli Foundation for Scientific Research and Development"},{"id":"https://openalex.org/G5667793510","display_name":null,"funder_award_id":"2159-1709.3/2006","funder_id":"https://openalex.org/F4320320947","funder_display_name":"German-Israeli Foundation for Scientific Research and Development"},{"id":"https://openalex.org/G5672796490","display_name":null,"funder_award_id":"236/06","funder_id":"https://openalex.org/F4320320947","funder_display_name":"German-Israeli Foundation for Scientific Research and Development"},{"id":"https://openalex.org/G6979747846","display_name":null,"funder_award_id":"306/6","funder_id":"https://openalex.org/F4320322252","funder_display_name":"Israel Science Foundation"},{"id":"https://openalex.org/G8067692827","display_name":null,"funder_award_id":"236/06","funder_id":"https://openalex.org/F4320322252","funder_display_name":"Israel Science Foundation"},{"id":"https://openalex.org/G8199961107","display_name":null,"funder_award_id":"236/06","funder_id":"https://openalex.org/F4320322596","funder_display_name":"Tel Aviv University"}],"funders":[{"id":"https://openalex.org/F4320320947","display_name":"German-Israeli Foundation for Scientific Research and Development","ror":"https://ror.org/00tntzp09"},{"id":"https://openalex.org/F4320322252","display_name":"Israel Science Foundation","ror":"https://ror.org/04sazxf24"},{"id":"https://openalex.org/F4320322596","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2001008407.pdf","grobid_xml":"https://content.openalex.org/works/W2001008407.grobid-xml"},"referenced_works_count":94,"referenced_works":["https://openalex.org/W373813039","https://openalex.org/W610636697","https://openalex.org/W1514082093","https://openalex.org/W1521785144","https://openalex.org/W1536373029","https://openalex.org/W1548178570","https://openalex.org/W1550166367","https://openalex.org/W1576219668","https://openalex.org/W1588812136","https://openalex.org/W1658817197","https://openalex.org/W1820924839","https://openalex.org/W1860073488","https://openalex.org/W1969548780","https://openalex.org/W1973481676","https://openalex.org/W1977708375","https://openalex.org/W1978012062","https://openalex.org/W1980956149","https://openalex.org/W1985490516","https://openalex.org/W1986982278","https://openalex.org/W1987836768","https://openalex.org/W1993177346","https://openalex.org/W1997477098","https://openalex.org/W1998093640","https://openalex.org/W2000443388","https://openalex.org/W2004436328","https://openalex.org/W2008708467","https://openalex.org/W2009129583","https://openalex.org/W2017496672","https://openalex.org/W2028968631","https://openalex.org/W2030728145","https://openalex.org/W2033746410","https://openalex.org/W2036016432","https://openalex.org/W2037348371","https://openalex.org/W2037907469","https://openalex.org/W2038131922","https://openalex.org/W2041462402","https://openalex.org/W2043528001","https://openalex.org/W2046141572","https://openalex.org/W2048822589","https://openalex.org/W2050323921","https://openalex.org/W2051183973","https://openalex.org/W2053197719","https://openalex.org/W2058206198","https://openalex.org/W2067484689","https://openalex.org/W2074129172","https://openalex.org/W2076758778","https://openalex.org/W2078344160","https://openalex.org/W2078362683","https://openalex.org/W2079199763","https://openalex.org/W2083381419","https://openalex.org/W2087151779","https://openalex.org/W2088437224","https://openalex.org/W2095157453","https://openalex.org/W2097433753","https://openalex.org/W2099593662","https://openalex.org/W2099598754","https://openalex.org/W2105254477","https://openalex.org/W2107076671","https://openalex.org/W2108196145","https://openalex.org/W2114520383","https://openalex.org/W2118233996","https://openalex.org/W2123564787","https://openalex.org/W2126162505","https://openalex.org/W2128990851","https://openalex.org/W2130479394","https://openalex.org/W2135815512","https://openalex.org/W2138116388","https://openalex.org/W2147798571","https://openalex.org/W2149301682","https://openalex.org/W2151386100","https://openalex.org/W2151971205","https://openalex.org/W2155812479","https://openalex.org/W2156975940","https://openalex.org/W2158322796","https://openalex.org/W2159247900","https://openalex.org/W2160028263","https://openalex.org/W2160082320","https://openalex.org/W2160349767","https://openalex.org/W2162166182","https://openalex.org/W2164958220","https://openalex.org/W2167869989","https://openalex.org/W2169127893","https://openalex.org/W2170580967","https://openalex.org/W2171266831","https://openalex.org/W2403902171","https://openalex.org/W2466548032","https://openalex.org/W2514356314","https://openalex.org/W2545150984","https://openalex.org/W2611243847","https://openalex.org/W2645793119","https://openalex.org/W3104753760","https://openalex.org/W4236570771","https://openalex.org/W4366956087","https://openalex.org/W6677217648"],"related_works":["https://openalex.org/W2364252372","https://openalex.org/W4234066492","https://openalex.org/W1998063895","https://openalex.org/W1967044713","https://openalex.org/W2133470120","https://openalex.org/W2747625183","https://openalex.org/W1994286895","https://openalex.org/W2378393413","https://openalex.org/W2802922463","https://openalex.org/W2080622457"],"abstract_inverted_index":{"Proteins":[0],"are":[1],"active,":[2],"flexible":[3],"machines":[4],"that":[5,37,85,200],"perform":[6],"a":[7,32,53,79,201],"range":[8],"of":[9,27,60,68,81,90,111,141,161,204,225,236,244],"different":[10,195,245],"functions.":[11],"Innovative":[12],"experimental":[13,100],"approaches":[14,36],"may":[15,208],"now":[16],"provide":[17],"limited":[18,202],"partial":[19],"information":[20,42,62,92,113],"about":[21,106],"conformational":[22,128,146],"changes":[23],"along":[24],"motion":[25,44,65,76,186],"pathways":[26],"proteins.":[28,188],"There":[29],"is":[30,114],"therefore":[31],"need":[33],"for":[34,57,158,174,184],"computational":[35],"can":[38,96,167],"efficiently":[39],"incorporate":[40],"prior":[41,61,91,112],"into":[43,63,153],"prediction":[45],"schemes.":[46],"In":[47,228],"this":[48,151],"paper,":[49],"we":[50,148],"present":[51],"PathRover,":[52],"general":[54],"setup":[55],"designed":[56],"the":[58,64,107,121,125,139,211,242,248],"integration":[59],"planning":[66],"algorithm":[67],"rapidly":[69],"exploring":[70],"random":[71],"trees":[72],"(RRT).":[73],"Each":[74],"suggested":[75,165],"pathway":[77],"comprises":[78],"sequence":[80],"low-energy":[82],"clash-free":[83],"conformations":[84],"satisfy":[86],"an":[87,155,170,217],"arbitrary":[88],"number":[89],"constraints.":[93],"These":[94],"constraints":[95,207,222],"be":[97],"derived":[98],"from":[99,103,220],"data":[101],"or":[102],"expert":[104],"intuition":[105],"motion.":[108,249],"The":[109,164],"incorporation":[110],"very":[115],"straightforward":[116],"and":[117,145,180,240],"significantly":[118],"narrows":[119],"down":[120],"vast":[122],"search":[123],"in":[124,134,187,216,247],"typically":[126],"high-dimensional":[127],"space,":[129],"leading":[130],"to":[131,193,223],"dramatic":[132],"reduction":[133],"running":[135],"time.":[136],"To":[137],"allow":[138],"use":[140],"state-of-the-art":[142],"energy":[143],"functions":[144],"sampling,":[147],"have":[149],"integrated":[150],"framework":[152,166,192],"Rosetta,":[154],"accurate":[156],"protocol":[157],"diverse":[159,214],"types":[160],"structural":[162],"modeling.":[163],"serve":[168],"as":[169],"effective":[171],"complementary":[172],"tool":[173],"molecular":[175],"dynamics,":[176],"Normal":[177],"Mode":[178],"Analysis,":[179],"other":[181],"prevalent":[182],"techniques":[183],"predicting":[185],"We":[189,198],"applied":[190],"our":[191,230],"three":[194],"model":[196],"systems.":[197],"show":[199],"set":[203],"experimentally":[205],"motivated":[206],"effectively":[209],"bias":[210],"simulations":[212],"toward":[213],"predicates":[215],"outright":[218],"fashion,":[219],"distance":[221],"enforcement":[224],"loop":[226],"closure.":[227],"particular,":[229],"analysis":[231],"sheds":[232],"light":[233],"on":[234,241],"mechanisms":[235],"protein":[237],"domain":[238],"swapping":[239],"role":[243],"residues":[246]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":6}],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2025-10-10T00:00:00"}
