{"id":"https://openalex.org/W2075293955","doi":"https://doi.org/10.1371/journal.pcbi.1000083","title":"Reconstruction of Protein Backbones from the BriX Collection of Canonical Protein Fragments","display_name":"Reconstruction of Protein Backbones from the BriX Collection of Canonical Protein Fragments","publication_year":2008,"publication_date":"2008-05-23","ids":{"openalex":"https://openalex.org/W2075293955","doi":"https://doi.org/10.1371/journal.pcbi.1000083","mag":"2075293955","pmid":"https://pubmed.ncbi.nlm.nih.gov/18483555"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1000083","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1000083","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1000083&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1000083&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025766287","display_name":"Lies Baeten","orcid":null},"institutions":[{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Lies Baeten","raw_affiliation_strings":["SWITCH Laboratory, Vrije Universiteit Brussels, Brussels, Belgium","VIB, Vrije Universiteit Brussels, Belgium"],"affiliations":[{"raw_affiliation_string":"SWITCH Laboratory, Vrije Universiteit Brussels, Brussels, Belgium","institution_ids":["https://openalex.org/I13469542"]},{"raw_affiliation_string":"VIB, Vrije Universiteit Brussels, Belgium","institution_ids":["https://openalex.org/I13469542"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068993139","display_name":"Joke Reumers","orcid":"https://orcid.org/0000-0001-5434-6515"},"institutions":[{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Joke Reumers","raw_affiliation_strings":["SWITCH Laboratory, Vrije Universiteit Brussels, Brussels, Belgium","VIB, Vrije Universiteit Brussels, Belgium"],"affiliations":[{"raw_affiliation_string":"SWITCH Laboratory, Vrije Universiteit Brussels, Brussels, Belgium","institution_ids":["https://openalex.org/I13469542"]},{"raw_affiliation_string":"VIB, Vrije Universiteit Brussels, Belgium","institution_ids":["https://openalex.org/I13469542"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025867802","display_name":"Vicente Tur","orcid":null},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Vicente Tur","raw_affiliation_strings":["Center for Genomic Regulation, Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Center for Genomic Regulation, Barcelona, Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056116507","display_name":"Fran\u00e7ois Stricher","orcid":"https://orcid.org/0000-0003-0150-0878"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Fran\u00e7ois Stricher","raw_affiliation_strings":["Center for Genomic Regulation, Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Center for Genomic Regulation, Barcelona, Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003581663","display_name":"Tom Lenaerts","orcid":"https://orcid.org/0000-0003-3645-1455"},"institutions":[{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Tom Lenaerts","raw_affiliation_strings":["SWITCH Laboratory, Vrije Universiteit Brussels, Brussels, Belgium","VIB, Vrije Universiteit Brussels, Belgium"],"affiliations":[{"raw_affiliation_string":"SWITCH Laboratory, Vrije Universiteit Brussels, Brussels, Belgium","institution_ids":["https://openalex.org/I13469542"]},{"raw_affiliation_string":"VIB, Vrije Universiteit Brussels, Belgium","institution_ids":["https://openalex.org/I13469542"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080707475","display_name":"Lu\u00eds Serrano","orcid":"https://orcid.org/0000-0002-5276-1392"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Luis Serrano","raw_affiliation_strings":["Center for Genomic Regulation, Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Center for Genomic Regulation, Barcelona, Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008256216","display_name":"Fr\u00e9d\u00e9ric Rousseau","orcid":"https://orcid.org/0000-0002-9189-7399"},"institutions":[{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Frederic Rousseau","raw_affiliation_strings":["SWITCH Laboratory, Vrije Universiteit Brussels, Brussels, Belgium","VIB, Vrije Universiteit Brussels, Belgium"],"affiliations":[{"raw_affiliation_string":"SWITCH Laboratory, Vrije Universiteit Brussels, Brussels, Belgium","institution_ids":["https://openalex.org/I13469542"]},{"raw_affiliation_string":"VIB, Vrije Universiteit Brussels, Belgium","institution_ids":["https://openalex.org/I13469542"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031589452","display_name":"Joost Schymkowitz","orcid":"https://orcid.org/0000-0003-2020-0168"},"institutions":[{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Joost Schymkowitz","raw_affiliation_strings":["SWITCH Laboratory, Vrije Universiteit Brussels, Brussels, Belgium","VIB, Vrije Universiteit Brussels, Belgium"],"affiliations":[{"raw_affiliation_string":"SWITCH Laboratory, Vrije Universiteit Brussels, Brussels, Belgium","institution_ids":["https://openalex.org/I13469542"]},{"raw_affiliation_string":"VIB, Vrije Universiteit Brussels, Belgium","institution_ids":["https://openalex.org/I13469542"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5008256216","https://openalex.org/A5031589452"],"corresponding_institution_ids":["https://openalex.org/I13469542"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":1.9368,"has_fulltext":true,"cited_by_count":63,"citation_normalized_percentile":{"value":0.85515785,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"4","issue":"5","first_page":"e1000083","last_page":"e1000083"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/loop-modeling","display_name":"Loop modeling","score":0.5521116852760315},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.5295449495315552},{"id":"https://openalex.org/keywords/structural-alignment","display_name":"Structural alignment","score":0.523621141910553},{"id":"https://openalex.org/keywords/conformational-isomerism","display_name":"Conformational isomerism","score":0.466171532869339},{"id":"https://openalex.org/keywords/crystallography","display_name":"Crystallography","score":0.4627670347690582},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4593503773212433},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3509078025817871},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3489585816860199},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.31542617082595825},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.3067016005516052},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.26973193883895874},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.2510318160057068},{"id":"https://openalex.org/keywords/molecule","display_name":"Molecule","score":0.13042110204696655},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1105031669139862}],"concepts":[{"id":"https://openalex.org/C45475804","wikidata":"https://www.wikidata.org/wiki/Q6675846","display_name":"Loop modeling","level":4,"score":0.5521116852760315},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.5295449495315552},{"id":"https://openalex.org/C4668613","wikidata":"https://www.wikidata.org/wiki/Q4116110","display_name":"Structural alignment","level":5,"score":0.523621141910553},{"id":"https://openalex.org/C18705241","wikidata":"https://www.wikidata.org/wiki/Q1128023","display_name":"Conformational isomerism","level":3,"score":0.466171532869339},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.4627670347690582},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4593503773212433},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3509078025817871},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3489585816860199},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.31542617082595825},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.3067016005516052},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.26973193883895874},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.2510318160057068},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.13042110204696655},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1105031669139862},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010446","descriptor_name":"Peptide Fragments","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010446","descriptor_name":"Peptide Fragments","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010446","descriptor_name":"Peptide Fragments","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1371/journal.pcbi.1000083","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1000083","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1000083&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:18483555","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18483555","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.274.8031","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.274.8031","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/94/93/PLoS_Comput_Biol_2008_May_23_4(5)_e1000083.tar.gz","raw_type":"text"},{"id":"pmh:oai:dipot.ulb.ac.be:2013/70653","is_oa":false,"landing_page_url":"http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/70653","pdf_url":null,"source":{"id":"https://openalex.org/S4306401063","display_name":"D\u00e9p\u00f4t institutionnel de l'Universit\u00e9 libre de Bruxelles (Universit\u00e9 Libre de Bruxelles)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I132053463","host_organization_name":"Universit\u00e9 Libre de Bruxelles","host_organization_lineage":["https://openalex.org/I132053463"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS computational biology, 4 (5","raw_type":"info:ulb-repo/semantics/openurl/article"},{"id":"pmh:oai:doaj.org/article:c2dfdcc0e96c4a0eb137afb525eabf99","is_oa":true,"landing_page_url":"https://doaj.org/article/c2dfdcc0e96c4a0eb137afb525eabf99","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 4, Iss 5, p e1000083 (2008)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/150398","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Reconstruction_of_Protein_Backbones_from_the_BriX_Collection_of_Canonical_Protein_Fragments/150398","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:pubmedcentral.nih.gov:2367438","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2367438","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:vubissmart:VUBISSMART:2000:48427","is_oa":false,"landing_page_url":"https://biblio.vub.ac.be/vubir/reconstruction-of-protein-backbones-from-the-brix-collection-of-canonical-protein-fragments(80b5cfe0-463d-4130-aefa-0bf796b5d31c).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306402573","display_name":"VUBIR (Vrije Universiteit Brussel)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I13469542","host_organization_name":"Vrije Universiteit Brussel","host_organization_lineage":["https://openalex.org/I13469542"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1000083","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1000083","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1000083&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320327336","display_name":"Vlaamse regering","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2075293955.pdf","grobid_xml":"https://content.openalex.org/works/W2075293955.grobid-xml"},"referenced_works_count":55,"referenced_works":["https://openalex.org/W255996521","https://openalex.org/W1963688559","https://openalex.org/W1969644422","https://openalex.org/W1970599428","https://openalex.org/W1976499789","https://openalex.org/W1989415425","https://openalex.org/W1990698302","https://openalex.org/W1994349207","https://openalex.org/W1997207653","https://openalex.org/W2008708467","https://openalex.org/W2020230520","https://openalex.org/W2033746410","https://openalex.org/W2041149980","https://openalex.org/W2049821875","https://openalex.org/W2051085340","https://openalex.org/W2060642619","https://openalex.org/W2063597362","https://openalex.org/W2065283382","https://openalex.org/W2069088519","https://openalex.org/W2080948893","https://openalex.org/W2085277871","https://openalex.org/W2096933265","https://openalex.org/W2099099776","https://openalex.org/W2100981947","https://openalex.org/W2101298197","https://openalex.org/W2101810621","https://openalex.org/W2108067237","https://openalex.org/W2109922499","https://openalex.org/W2110890402","https://openalex.org/W2111696858","https://openalex.org/W2114520383","https://openalex.org/W2116822865","https://openalex.org/W2125390098","https://openalex.org/W2128709101","https://openalex.org/W2128816059","https://openalex.org/W2132717858","https://openalex.org/W2133657429","https://openalex.org/W2135617309","https://openalex.org/W2136144366","https://openalex.org/W2136567909","https://openalex.org/W2136989186","https://openalex.org/W2137345862","https://openalex.org/W2140992384","https://openalex.org/W2141408390","https://openalex.org/W2148047088","https://openalex.org/W2148676725","https://openalex.org/W2150627302","https://openalex.org/W2152655599","https://openalex.org/W2156328030","https://openalex.org/W2158266834","https://openalex.org/W2166744107","https://openalex.org/W2170584833","https://openalex.org/W2170665034","https://openalex.org/W6609701964","https://openalex.org/W6738852829"],"related_works":["https://openalex.org/W2088487249","https://openalex.org/W1971751969","https://openalex.org/W1493920382","https://openalex.org/W2026882519","https://openalex.org/W2157930580","https://openalex.org/W2414840205","https://openalex.org/W2015399150","https://openalex.org/W2092691595","https://openalex.org/W2123681803","https://openalex.org/W2121688928"],"abstract_inverted_index":{"As":[0,127],"modeling":[1],"of":[2,17,40,52,60,68,84,87,94,97,108,123,158,188,220],"changes":[3],"in":[4,32],"backbone":[5,25,54],"conformation":[6],"still":[7],"lacks":[8],"a":[9,15,57,102,150,185],"computationally":[10],"efficient":[11],"solution,":[12],"we":[13,112,182],"developed":[14],"discretisation":[16],"the":[18,23,28,85,204,217],"conformational":[19],"states":[20],"accessible":[21],"to":[22,27,44,115,148,192],"protein":[24,62,95,117],"similar":[26],"successful":[29],"rotamer":[30],"approach":[31],"side":[33],"chains.":[34],"The":[35],"BriX":[36,64,88],"fragment":[37],"database,":[38],"consisting":[39],"fragments":[41,55],"from":[42,56,171],"4":[43,176],"14":[45],"residues":[46,179],"long,":[47],"was":[48],"realized":[49],"through":[50],"identification":[51],"recurrent":[53,151,173],"non-redundant":[58],"set":[59],"high-resolution":[61],"structures.":[63,163,222],"contains":[65],"an":[66,90,120],"alphabet":[67],"more":[69,98],"than":[70,99,160],"1,000":[71],"frequently":[72],"observed":[73,183],"conformations":[74],"per":[75],"peptide":[76],"length":[77,206],"for":[78],"6":[79],"different":[80],"variation":[81],"levels.":[82],"Analysis":[83],"performance":[86],"revealed":[89],"average":[91,121],"structural":[92,152,195],"coverage":[93],"structures":[96,118,130],"99%":[100],"within":[101],"root":[103],"mean":[104],"square":[105],"distance":[106],"(RMSD)":[107],"1":[109],"Angstrom.":[110],"Globally,":[111],"are":[113,131,145],"able":[114],"reconstruct":[116],"with":[119,155],"accuracy":[122],"0.48":[124],"Angstrom":[125],"RMSD.":[126],"expected,":[128],"regular":[129,161],"well":[132],"covered,":[133],"but,":[134],"interestingly,":[135],"many":[136],"loop":[137,165],"regions":[138,166],"that":[139,184],"appear":[140],"irregular":[141],"at":[142],"first":[143],"glance":[144],"also":[146],"found":[147],"form":[149],"motif,":[153],"albeit":[154],"lower":[156],"frequency":[157],"occurrence":[159],"secondary":[162],"Larger":[164],"could":[167],"be":[168],"completely":[169],"reconstructed":[170],"smaller":[172],"elements,":[174],"between":[175,197],"and":[177,200],"8":[178],"long.":[180],"Finally,":[181],"significant":[186],"amount":[187],"short":[189],"sequences":[190],"tend":[191],"display":[193],"strong":[194],"ambiguity":[196],"alpha":[198],"helix":[199],"extended":[201],"conformations.":[202],"When":[203],"sequence":[205,210],"increases,":[207],"this":[208],"so-called":[209],"plasticity":[211],"is":[212],"no":[213],"longer":[214],"observed,":[215],"illustrating":[216],"context":[218],"dependency":[219],"polypeptide":[221]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":15},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-24T08:23:43.765630","created_date":"2025-10-10T00:00:00"}
