{"id":"https://openalex.org/W2114582148","doi":"https://doi.org/10.1371/journal.pcbi.0040016","title":"Getting Started in Biological Pathway Construction and Analysis","display_name":"Getting Started in Biological Pathway Construction and Analysis","publication_year":2008,"publication_date":"2008-02-22","ids":{"openalex":"https://openalex.org/W2114582148","doi":"https://doi.org/10.1371/journal.pcbi.0040016","mag":"2114582148","pmid":"https://pubmed.ncbi.nlm.nih.gov/18463709"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.0040016","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.0040016","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.0040016&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.0040016&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018547235","display_name":"Ganesh A. Viswanathan","orcid":"https://orcid.org/0000-0001-6424-0765"},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ganesh A Viswanathan","raw_affiliation_strings":["Center for Translational Systems Biology and Department of Neurology, Mount Sinai School of Medicine, New York, New York, United States of America"],"affiliations":[{"raw_affiliation_string":"Center for Translational Systems Biology and Department of Neurology, Mount Sinai School of Medicine, New York, New York, United States of America","institution_ids":["https://openalex.org/I98704320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023668390","display_name":"Jeremy Seto","orcid":null},"institutions":[{"id":"https://openalex.org/I4210155419","display_name":"Center for Systems Biology","ror":"https://ror.org/05r3dyn47","country_code":"US","type":"facility","lineage":["https://openalex.org/I136199984","https://openalex.org/I4210087915","https://openalex.org/I4210155419","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]},{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeremy Seto","raw_affiliation_strings":["Center for Translational Systems Biology and","Department of Neurology, Mount Sinai School of Medicine, New York, New York, United States of America","Princeton University, United States of America"],"affiliations":[{"raw_affiliation_string":"Center for Translational Systems Biology and","institution_ids":["https://openalex.org/I4210155419"]},{"raw_affiliation_string":"Department of Neurology, Mount Sinai School of Medicine, New York, New York, United States of America","institution_ids":["https://openalex.org/I98704320"]},{"raw_affiliation_string":"Princeton University, United States of America","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023936089","display_name":"Sonali Patil","orcid":"https://orcid.org/0000-0002-4358-4937"},"institutions":[{"id":"https://openalex.org/I4210155419","display_name":"Center for Systems Biology","ror":"https://ror.org/05r3dyn47","country_code":"US","type":"facility","lineage":["https://openalex.org/I136199984","https://openalex.org/I4210087915","https://openalex.org/I4210155419","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]},{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sonali Patil","raw_affiliation_strings":["Department of Neurology, Mount Sinai School of Medicine, New York, New York, United States of America","Center for Translational Systems Biology and","Princeton University, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Neurology, Mount Sinai School of Medicine, New York, New York, United States of America","institution_ids":["https://openalex.org/I98704320"]},{"raw_affiliation_string":"Center for Translational Systems Biology and","institution_ids":["https://openalex.org/I4210155419"]},{"raw_affiliation_string":"Princeton University, United States of America","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073509037","display_name":"German Nudelman","orcid":"https://orcid.org/0000-0002-5344-5981"},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]},{"id":"https://openalex.org/I4210155419","display_name":"Center for Systems Biology","ror":"https://ror.org/05r3dyn47","country_code":"US","type":"facility","lineage":["https://openalex.org/I136199984","https://openalex.org/I4210087915","https://openalex.org/I4210155419","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"German Nudelman","raw_affiliation_strings":["Princeton University, United States of America","Department of Neurology, Mount Sinai School of Medicine, New York, New York, United States of America","Center for Translational Systems Biology and"],"affiliations":[{"raw_affiliation_string":"Princeton University, United States of America","institution_ids":["https://openalex.org/I20089843"]},{"raw_affiliation_string":"Department of Neurology, Mount Sinai School of Medicine, New York, New York, United States of America","institution_ids":["https://openalex.org/I98704320"]},{"raw_affiliation_string":"Center for Translational Systems Biology and","institution_ids":["https://openalex.org/I4210155419"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058017696","display_name":"Stuart C. Sealfon","orcid":"https://orcid.org/0000-0001-5791-1217"},"institutions":[{"id":"https://openalex.org/I4210155419","display_name":"Center for Systems Biology","ror":"https://ror.org/05r3dyn47","country_code":"US","type":"facility","lineage":["https://openalex.org/I136199984","https://openalex.org/I4210087915","https://openalex.org/I4210155419","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]},{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Stuart C Sealfon","raw_affiliation_strings":["Center for Translational Systems Biology and","Department of Neurology, Mount Sinai School of Medicine, New York, New York, United States of America","Princeton University, United States of America"],"affiliations":[{"raw_affiliation_string":"Center for Translational Systems Biology and","institution_ids":["https://openalex.org/I4210155419"]},{"raw_affiliation_string":"Department of Neurology, Mount Sinai School of Medicine, New York, New York, United States of America","institution_ids":["https://openalex.org/I98704320"]},{"raw_affiliation_string":"Princeton University, United States of America","institution_ids":["https://openalex.org/I20089843"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5058017696"],"corresponding_institution_ids":["https://openalex.org/I20089843","https://openalex.org/I4210155419","https://openalex.org/I98704320"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":4.1493,"has_fulltext":true,"cited_by_count":103,"citation_normalized_percentile":{"value":0.94692998,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":100},"biblio":{"volume":"4","issue":"2","first_page":"e16","last_page":"e16"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ingenuity","display_name":"Ingenuity","score":0.7395111322402954},{"id":"https://openalex.org/keywords/biological-pathway","display_name":"Biological pathway","score":0.5731663703918457},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5053322911262512},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.48575642704963684},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4788803458213806},{"id":"https://openalex.org/keywords/pathway-analysis","display_name":"Pathway analysis","score":0.46960553526878357},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4537898898124695},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3760942220687866},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3188626170158386},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.21223238110542297},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12652966380119324},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.10206684470176697}],"concepts":[{"id":"https://openalex.org/C2778154381","wikidata":"https://www.wikidata.org/wiki/Q105296908","display_name":"Ingenuity","level":2,"score":0.7395111322402954},{"id":"https://openalex.org/C9927688","wikidata":"https://www.wikidata.org/wiki/Q4915012","display_name":"Biological pathway","level":4,"score":0.5731663703918457},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5053322911262512},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.48575642704963684},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4788803458213806},{"id":"https://openalex.org/C2779230013","wikidata":"https://www.wikidata.org/wiki/Q25303877","display_name":"Pathway analysis","level":4,"score":0.46960553526878357},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4537898898124695},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3760942220687866},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3188626170158386},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21223238110542297},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12652966380119324},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.10206684470176697},{"id":"https://openalex.org/C133425853","wikidata":"https://www.wikidata.org/wiki/Q60571","display_name":"Neoclassical economics","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.0040016","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.0040016","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.0040016&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:18463709","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18463709","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:ce220f4c8089471e992bb21fef462c96","is_oa":true,"landing_page_url":"https://doaj.org/article/ce220f4c8089471e992bb21fef462c96","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 4, Iss 2, p e16 (2008)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2622573","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC2323403","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/150887","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Getting_Started_in_Biological_Pathway_Construction_and_Analysis/150887","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:pubmedcentral.nih.gov:2323403","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2323403","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.0040016","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.0040016","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.0040016&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions","score":0.6299999952316284}],"awards":[{"id":"https://openalex.org/G3455945718","display_name":null,"funder_award_id":"HHSN2662000500021C","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G5903061775","display_name":null,"funder_award_id":"NIAID","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2114582148.pdf","grobid_xml":"https://content.openalex.org/works/W2114582148.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W599966374","https://openalex.org/W1599969036","https://openalex.org/W2022381538","https://openalex.org/W2063219876","https://openalex.org/W2124533460","https://openalex.org/W2138059820","https://openalex.org/W2147714160","https://openalex.org/W2153258203","https://openalex.org/W2315135172","https://openalex.org/W6618172411","https://openalex.org/W7074118358"],"related_works":["https://openalex.org/W2127557112","https://openalex.org/W4362406386","https://openalex.org/W4361930347","https://openalex.org/W4226066106","https://openalex.org/W2060814806","https://openalex.org/W2981835341","https://openalex.org/W4311718423","https://openalex.org/W2162143298","https://openalex.org/W2790180944","https://openalex.org/W2792179313"],"abstract_inverted_index":{"A":[0],"comprehensive":[1],"list":[2],"of":[3,31,36,55],"databases":[4],"can":[5],"be":[6],"found":[7],"in":[8],"Pathguide":[9],"(http://www.pathguide.org).":[10],"A,":[11],"automated":[12,18],"curation;":[13,19,61],"B,":[14],"both":[15],"manual":[16,60],"and":[17,40,57],"BIND,":[20],"Biomolecular":[21],"Interaction":[22,84,96],"Network":[23,44],"Database;":[24,51,70,85,92,97],"BioPP,":[25],"Biological":[26],"Pathway":[27,65,95],"Publisher;":[28],"DIP,":[29],"Database":[30],"Interacting":[32],"Proteins;":[33],"EcoCyc,":[34],"Encyclopaedia":[35],"E.":[37],"coli":[38],"Genes":[39,56],"Metabolism;":[41],"GNPV,":[42],"Genome":[43],"Platform":[45],"Viewer;":[46],"HPRD,":[47],"Human":[48,83,105],"Protein":[49,76,87],"Reference":[50],"KEGG,":[52],"Kyoto":[53],"Encyclopedia":[54],"Genomes;":[58],"M,":[59],"MetaCyc,":[62],"a":[63],"Metabolic":[64],"database;":[66],"MINT,":[67],"Molecular":[68],"Interation":[69],"MIPS,":[71],"Munich":[72],"Information":[73],"Center":[74],"for":[75],"Sequences;":[77],"N,":[78],"No;":[79],"OPHID,":[80],"Online":[81],"Predicted":[82],"PANTHER,":[86],"Analysis":[88],"through":[89],"Evolutionary":[90],"Relationship":[91],"PID,":[93],"The":[94],"STKE,":[98],"Signal":[99],"Transduction":[100],"Knowledge":[101],"Environment,":[102],"UNIHI,":[103],"Unified":[104],"Interactome;":[106],"Y,":[107],"yes.":[108],"(61":[109],"KB":[110],"DOC)":[111]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":5},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":10},{"year":2013,"cited_by_count":13},{"year":2012,"cited_by_count":9}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
