{"id":"https://openalex.org/W2094005653","doi":"https://doi.org/10.1371/journal.pcbi.0030140","title":"Natively Unstructured Loops Differ from Other Loops","display_name":"Natively Unstructured Loops Differ from Other Loops","publication_year":2007,"publication_date":"2007-07-17","ids":{"openalex":"https://openalex.org/W2094005653","doi":"https://doi.org/10.1371/journal.pcbi.0030140","mag":"2094005653","pmid":"https://pubmed.ncbi.nlm.nih.gov/17658943"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.0030140","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.0030140","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.0030140&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.0030140&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048927341","display_name":"Avner Schlessinger","orcid":"https://orcid.org/0000-0003-4007-7814"},"institutions":[{"id":"https://openalex.org/I4210096322","display_name":"New York Structural Biology Center","ror":"https://ror.org/00new7409","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210096322"]},{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Avner Schlessinger","raw_affiliation_strings":["Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York, USA. as2067@columbia.edu","Northeast Structural Genomics Consortium, Columbia University, New York, New York, United States of America","Columbia University Center for Computational Biology and Bioinformatics (C2B2), New York, New York, United States of America","Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York, USA. as2067@columbia.edu","institution_ids":["https://openalex.org/I78577930"]},{"raw_affiliation_string":"Northeast Structural Genomics Consortium, Columbia University, New York, New York, United States of America","institution_ids":["https://openalex.org/I4210096322","https://openalex.org/I78577930"]},{"raw_affiliation_string":"Columbia University Center for Computational Biology and Bioinformatics (C2B2), New York, New York, United States of America","institution_ids":["https://openalex.org/I78577930"]},{"raw_affiliation_string":"Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York, United States of America","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100424761","display_name":"Jinfeng Liu","orcid":"https://orcid.org/0000-0002-0343-8222"},"institutions":[{"id":"https://openalex.org/I4210096322","display_name":"New York Structural Biology Center","ror":"https://ror.org/00new7409","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210096322"]},{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jinfeng Liu","raw_affiliation_strings":["","Columbia University Center for Computational Biology and Bioinformatics (C2B2), New York, New York, United States of America","Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York, United States of America","Northeast Structural Genomics Consortium, Columbia University, New York, New York, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"","institution_ids":[]},{"raw_affiliation_string":"Columbia University Center for Computational Biology and Bioinformatics (C2B2), New York, New York, United States of America","institution_ids":["https://openalex.org/I78577930"]},{"raw_affiliation_string":"Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York, United States of America","institution_ids":["https://openalex.org/I78577930"]},{"raw_affiliation_string":"Northeast Structural Genomics Consortium, Columbia University, New York, New York, United States of America","institution_ids":["https://openalex.org/I4210096322","https://openalex.org/I78577930"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064905883","display_name":"Burkhard Rost","orcid":"https://orcid.org/0000-0003-0179-8424"},"institutions":[{"id":"https://openalex.org/I4210096322","display_name":"New York Structural Biology Center","ror":"https://ror.org/00new7409","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210096322"]},{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Burkhard Rost","raw_affiliation_strings":["","Columbia University Center for Computational Biology and Bioinformatics (C2B2), New York, New York, United States of America","Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York, United States of America","Northeast Structural Genomics Consortium, Columbia University, New York, New York, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"","institution_ids":[]},{"raw_affiliation_string":"Columbia University Center for Computational Biology and Bioinformatics (C2B2), New York, New York, United States of America","institution_ids":["https://openalex.org/I78577930"]},{"raw_affiliation_string":"Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York, United States of America","institution_ids":["https://openalex.org/I78577930"]},{"raw_affiliation_string":"Northeast Structural Genomics Consortium, Columbia University, New York, New York, United States of America","institution_ids":["https://openalex.org/I4210096322","https://openalex.org/I78577930"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5048927341"],"corresponding_institution_ids":["https://openalex.org/I4210096322","https://openalex.org/I78577930"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":3.0173,"has_fulltext":true,"cited_by_count":100,"citation_normalized_percentile":{"value":0.9191217,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"3","issue":"7","first_page":"e140","last_page":"e140"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11882","display_name":"Plant biochemistry and biosynthesis","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/unstructured-data","display_name":"Unstructured data","score":0.7575113773345947},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6877532601356506},{"id":"https://openalex.org/keywords/outlier","display_name":"Outlier","score":0.48014968633651733},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4215502142906189},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4059599041938782},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3447527587413788},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34268903732299805},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3013584613800049},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.12247604131698608}],"concepts":[{"id":"https://openalex.org/C2781252014","wikidata":"https://www.wikidata.org/wiki/Q1141900","display_name":"Unstructured data","level":3,"score":0.7575113773345947},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6877532601356506},{"id":"https://openalex.org/C79337645","wikidata":"https://www.wikidata.org/wiki/Q779824","display_name":"Outlier","level":2,"score":0.48014968633651733},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4215502142906189},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4059599041938782},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3447527587413788},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34268903732299805},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3013584613800049},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.12247604131698608}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011237","descriptor_name":"Predictive Value of Tests","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011237","descriptor_name":"Predictive Value of Tests","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011237","descriptor_name":"Predictive Value of Tests","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1371/journal.pcbi.0030140","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.0030140","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.0030140&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:17658943","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17658943","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:RePEc:plo:pcbi00:0030140","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.0030140","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:982ba823985744e7b24e9ff66af22bd6","is_oa":true,"landing_page_url":"https://doaj.org/article/982ba823985744e7b24e9ff66af22bd6","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 3, Iss 7, p e140 (2007)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2622366","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC1924875","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/152196","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Natively_Unstructured_Loops_Differ_from_Other_Loops/152196","pdf_url":null,"source":{"id":"https://openalex.org/S4306402621","display_name":"INDIGO (University of Illinois at Chicago)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I39422238","host_organization_name":"University of Illinois Chicago","host_organization_lineage":["https://openalex.org/I39422238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:pubmedcentral.nih.gov:1924875","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1924875","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.0030140","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.0030140","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.0030140&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1070260364","display_name":null,"funder_award_id":"R01 LM007329","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G3513698985","display_name":null,"funder_award_id":"2R01-LM07329-01","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G5409796207","display_name":null,"funder_award_id":"U54 GM074958","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G8814945533","display_name":null,"funder_award_id":"U54-GM072980","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320320286","display_name":"University College London","ror":"https://ror.org/02jx3x895"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2094005653.pdf","grobid_xml":"https://content.openalex.org/works/W2094005653.grobid-xml"},"referenced_works_count":87,"referenced_works":["https://openalex.org/W121768123","https://openalex.org/W1491063910","https://openalex.org/W1499450468","https://openalex.org/W1547343431","https://openalex.org/W1600814222","https://openalex.org/W1602917883","https://openalex.org/W1763894483","https://openalex.org/W1792685479","https://openalex.org/W1845459216","https://openalex.org/W1847611580","https://openalex.org/W1967974247","https://openalex.org/W1975121208","https://openalex.org/W1980015132","https://openalex.org/W1982250822","https://openalex.org/W1983575462","https://openalex.org/W1985818354","https://openalex.org/W1988624456","https://openalex.org/W1991879937","https://openalex.org/W1995663955","https://openalex.org/W2000093524","https://openalex.org/W2006192061","https://openalex.org/W2007016963","https://openalex.org/W2007794469","https://openalex.org/W2008708467","https://openalex.org/W2011983814","https://openalex.org/W2014776147","https://openalex.org/W2020481171","https://openalex.org/W2021093679","https://openalex.org/W2030776726","https://openalex.org/W2035487389","https://openalex.org/W2050625197","https://openalex.org/W2052606462","https://openalex.org/W2055193239","https://openalex.org/W2057289558","https://openalex.org/W2064280962","https://openalex.org/W2072649575","https://openalex.org/W2075086532","https://openalex.org/W2085029305","https://openalex.org/W2092153867","https://openalex.org/W2095259434","https://openalex.org/W2096275987","https://openalex.org/W2097209195","https://openalex.org/W2099254366","https://openalex.org/W2101220662","https://openalex.org/W2101600610","https://openalex.org/W2102025585","https://openalex.org/W2102701612","https://openalex.org/W2106853369","https://openalex.org/W2110110505","https://openalex.org/W2113019448","https://openalex.org/W2114604135","https://openalex.org/W2114823344","https://openalex.org/W2115190629","https://openalex.org/W2118432471","https://openalex.org/W2119986079","https://openalex.org/W2120881407","https://openalex.org/W2124707779","https://openalex.org/W2125725297","https://openalex.org/W2128021885","https://openalex.org/W2129421547","https://openalex.org/W2131965976","https://openalex.org/W2134327751","https://openalex.org/W2135531426","https://openalex.org/W2137259082","https://openalex.org/W2137736270","https://openalex.org/W2140481505","https://openalex.org/W2141803423","https://openalex.org/W2142529984","https://openalex.org/W2149472608","https://openalex.org/W2149822709","https://openalex.org/W2152265734","https://openalex.org/W2152282874","https://openalex.org/W2153414768","https://openalex.org/W2155144535","https://openalex.org/W2155723007","https://openalex.org/W2156407548","https://openalex.org/W2156469184","https://openalex.org/W2156678798","https://openalex.org/W2158714788","https://openalex.org/W2159938554","https://openalex.org/W2161199282","https://openalex.org/W2162720882","https://openalex.org/W2167785155","https://openalex.org/W2168970921","https://openalex.org/W2169085154","https://openalex.org/W2486827194","https://openalex.org/W2918011059"],"related_works":["https://openalex.org/W3184725726","https://openalex.org/W3203889067","https://openalex.org/W3006513224","https://openalex.org/W2378793138","https://openalex.org/W2759357633","https://openalex.org/W2046456988","https://openalex.org/W2357409937","https://openalex.org/W2074430941","https://openalex.org/W3169533859","https://openalex.org/W2113096305"],"abstract_inverted_index":{"Natively":[0],"unstructured":[1,29,85,126,144,164,187,203,225,257,269,276],"or":[2],"disordered":[3],"protein":[4],"regions":[5,30,127,165,188,204,226,277],"may":[6,212],"increase":[7],"the":[8,106,176],"functional":[9],"complexity":[10],"of":[11,125,163,219,243,275],"an":[12,42],"organism;":[13],"they":[14,135],"are":[15,136,271],"particularly":[16],"abundant":[17],"in":[18,35,49,152,189,205,229,278],"eukaryotes":[19],"and":[20,53,75,110,117,143,159,211,264],"often":[21,228],"evade":[22],"structure":[23,66],"determination.":[24],"Many":[25],"computational":[26],"methods":[27],"predict":[28,83],"by":[31],"training":[32],"on":[33,92,97,121,156],"outliers":[34],"otherwise":[36],"well-ordered":[37],"structures.":[38],"Here,":[39],"we":[40,239],"introduce":[41],"approach":[43],"that":[44,58,76,134,149,167,191,241,267],"uses":[45],"a":[46,50,77,129,272],"neural":[47],"network":[48],"very":[51,59,170],"different":[52],"novel":[54],"way.":[55],"We":[56],"hypothesize":[57],"long":[60,268],"contiguous":[61],"segments":[62],"with":[63,128],"nonregular":[64],"secondary":[65],"(NORS":[67],"regions)":[68],"differ":[69,146],"significantly":[70],"from":[71],"regular,":[72],"well-structured":[73,142],"loops,":[74],"method":[78],"detecting":[79],"such":[80],"features":[81],"could":[82],"natively":[84],"regions.":[86,258],"Training":[87],"our":[88],"new":[89,160],"method,":[90,180],"NORSnet,":[91],"predicted":[93],"information":[94],"rather":[95],"than":[96,232,251],"experimental":[98,161],"data":[99,162],"yielded":[100],"three":[101],"major":[102,273],"advantages:":[103],"it":[104,112,118,173],"removed":[105],"overlap":[107],"between":[108,262],"testing":[109],"training,":[111],"systematically":[113],"covered":[114],"entire":[115],"proteomes,":[116],"explicitly":[119],"focused":[120],"one":[122,197],"particular":[123],"aspect":[124],"simple":[130],"structural":[131,209,217],"interpretation,":[132],"namely":[133],"loops.":[137],"Our":[138],"hypothesis":[139],"was":[140,174,182],"correct:":[141],"loops":[145,270],"so":[147],"substantially":[148],"NORSnet":[150,168,181,199,223,263],"succeeded":[151],"their":[153],"distinction.":[154],"Benchmarks":[155],"previously":[157,193,201],"used":[158],"revealed":[166,200],"performed":[169],"well.":[171],"Although":[172],"not":[175,194],"best":[177],"single":[178],"prediction":[179],"sufficiently":[183],"accurate":[184],"to":[185,215,248],"flag":[186],"proteins":[190,246],"were":[192],"annotated.":[195],"In":[196,236],"application,":[198,238],"undetected":[202],"putative":[206],"targets":[207],"for":[208],"genomics":[210],"thereby":[213],"contribute":[214],"increasing":[216],"coverage":[218],"large":[220],"eukaryotic":[221],"families.":[222],"found":[224],"more":[227,250],"domain":[230],"boundaries":[231],"expected":[233],"at":[234],"random.":[235],"another":[237],"estimated":[240],"50%-70%":[242],"all":[244],"worm":[245],"observed":[247],"have":[249,256],"seven":[252],"protein-protein":[253],"interaction":[254],"partners":[255],"The":[259],"comparative":[260],"analysis":[261],"DISOPRED2":[265],"suggested":[266],"part":[274],"molecular":[279],"networks.":[280]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":9},{"year":2013,"cited_by_count":10},{"year":2012,"cited_by_count":11}],"updated_date":"2026-07-26T07:53:14.480251","created_date":"2025-10-10T00:00:00"}
