{"id":"https://openalex.org/W1966821124","doi":"https://doi.org/10.1371/journal.pcbi.0030041","title":"UV-Induced Mutagenesis in Escherichia coli SOS Response: A Quantitative Model","display_name":"UV-Induced Mutagenesis in Escherichia coli SOS Response: A Quantitative Model","publication_year":2007,"publication_date":"2007-03-13","ids":{"openalex":"https://openalex.org/W1966821124","doi":"https://doi.org/10.1371/journal.pcbi.0030041","mag":"1966821124","pmid":"https://pubmed.ncbi.nlm.nih.gov/17367202"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.0030041","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.0030041","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.0030041&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.0030041&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022625151","display_name":"Sandeep Krishna","orcid":"https://orcid.org/0000-0002-0581-173X"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Sandeep Krishna","raw_affiliation_strings":["Niels Bohr Institute, University of Copenhagen, Copenhagen, Denmark","[Niels Bohr Institute, University of Copenhagen, Copenhagen, Denmark]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Niels Bohr Institute, University of Copenhagen, Copenhagen, Denmark","institution_ids":["https://openalex.org/I124055696"]},{"raw_affiliation_string":"[Niels Bohr Institute, University of Copenhagen, Copenhagen, Denmark]","institution_ids":["https://openalex.org/I124055696"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017591427","display_name":"Sergei Maslov","orcid":"https://orcid.org/0000-0002-3701-492X"},"institutions":[{"id":"https://openalex.org/I200870766","display_name":"Brookhaven National Laboratory","ror":"https://ror.org/02ex6cf31","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I200870766","https://openalex.org/I39565521","https://openalex.org/I4210142672"]},{"id":"https://openalex.org/I4210139016","display_name":"Material Sciences (United States)","ror":"https://ror.org/046v9f126","country_code":"US","type":"company","lineage":["https://openalex.org/I4210139016"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sergei Maslov","raw_affiliation_strings":["Department of Condensed Matter Physics and Material Sciences, Brookhaven National Laboratory, Upton, New York, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Condensed Matter Physics and Material Sciences, Brookhaven National Laboratory, Upton, New York, United States of America","institution_ids":["https://openalex.org/I200870766","https://openalex.org/I4210139016"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018193153","display_name":"Kim Sneppen","orcid":"https://orcid.org/0000-0001-9820-3567"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]}],"countries":["DK"],"is_corresponding":true,"raw_author_name":"Kim Sneppen","raw_affiliation_strings":["Niels Bohr Institute, University of Copenhagen, Copenhagen, Denmark","[Niels Bohr Institute, University of Copenhagen, Copenhagen, Denmark]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Niels Bohr Institute, University of Copenhagen, Copenhagen, Denmark","institution_ids":["https://openalex.org/I124055696"]},{"raw_affiliation_string":"[Niels Bohr Institute, University of Copenhagen, Copenhagen, Denmark]","institution_ids":["https://openalex.org/I124055696"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5018193153"],"corresponding_institution_ids":["https://openalex.org/I124055696"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":2.5454,"has_fulltext":true,"cited_by_count":59,"citation_normalized_percentile":{"value":0.89871834,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"3","issue":"3","first_page":"e41","last_page":"e41"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10123","display_name":"DNA Repair Mechanisms","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/escherichia-coli","display_name":"Escherichia coli","score":0.8005453944206238},{"id":"https://openalex.org/keywords/mutagenesis","display_name":"Mutagenesis","score":0.6459656953811646},{"id":"https://openalex.org/keywords/sos-response","display_name":"SOS response","score":0.6350947022438049},{"id":"https://openalex.org/keywords/escherichia-coli-proteins","display_name":"Escherichia coli Proteins","score":0.4622120261192322},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.42309486865997314},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40820327401161194},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.33684492111206055},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.32664954662323},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.27717310190200806},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11062979698181152}],"concepts":[{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.8005453944206238},{"id":"https://openalex.org/C16318435","wikidata":"https://www.wikidata.org/wiki/Q149299","display_name":"Mutagenesis","level":4,"score":0.6459656953811646},{"id":"https://openalex.org/C2780852648","wikidata":"https://www.wikidata.org/wiki/Q143584","display_name":"SOS response","level":4,"score":0.6350947022438049},{"id":"https://openalex.org/C2908821069","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli Proteins","level":4,"score":0.4622120261192322},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.42309486865997314},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40820327401161194},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.33684492111206055},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.32664954662323},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.27717310190200806},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11062979698181152}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004249","descriptor_name":"DNA Damage","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D004249","descriptor_name":"DNA Damage","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D004249","descriptor_name":"DNA Damage","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D004259","descriptor_name":"DNA-Directed DNA Polymerase","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004259","descriptor_name":"DNA-Directed DNA Polymerase","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004259","descriptor_name":"DNA-Directed DNA Polymerase","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000528","qualifier_name":"radiation effects","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000528","qualifier_name":"radiation effects","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000528","qualifier_name":"radiation effects","is_major_topic":false},{"descriptor_ui":"D004307","descriptor_name":"Dose-Response Relationship, Radiation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004307","descriptor_name":"Dose-Response Relationship, Radiation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004307","descriptor_name":"Dose-Response Relationship, Radiation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011829","descriptor_name":"Radiation Dosage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011829","descriptor_name":"Radiation Dosage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011829","descriptor_name":"Radiation Dosage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013014","descriptor_name":"SOS Response, Genetics","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D013014","descriptor_name":"SOS Response, Genetics","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D013014","descriptor_name":"SOS Response, Genetics","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D013014","descriptor_name":"SOS Response, Genetics","qualifier_ui":"Q000528","qualifier_name":"radiation effects","is_major_topic":false},{"descriptor_ui":"D013014","descriptor_name":"SOS Response, Genetics","qualifier_ui":"Q000528","qualifier_name":"radiation effects","is_major_topic":false},{"descriptor_ui":"D013014","descriptor_name":"SOS Response, Genetics","qualifier_ui":"Q000528","qualifier_name":"radiation effects","is_major_topic":false},{"descriptor_ui":"D014466","descriptor_name":"Ultraviolet Rays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014466","descriptor_name":"Ultraviolet Rays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014466","descriptor_name":"Ultraviolet Rays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016296","descriptor_name":"Mutagenesis","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D016296","descriptor_name":"Mutagenesis","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D016296","descriptor_name":"Mutagenesis","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D016296","descriptor_name":"Mutagenesis","qualifier_ui":"Q000528","qualifier_name":"radiation effects","is_major_topic":false},{"descriptor_ui":"D016296","descriptor_name":"Mutagenesis","qualifier_ui":"Q000528","qualifier_name":"radiation effects","is_major_topic":false},{"descriptor_ui":"D016296","descriptor_name":"Mutagenesis","qualifier_ui":"Q000528","qualifier_name":"radiation effects","is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1371/journal.pcbi.0030041","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.0030041","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.0030041&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:17367202","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17367202","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:osti.gov:1627182","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1627182","pdf_url":"https://www.osti.gov/servlets/purl/1627182","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:doaj.org/article:6273acf45ee548abb5fb9eec3d28c921","is_oa":true,"landing_page_url":"https://doaj.org/article/6273acf45ee548abb5fb9eec3d28c921","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 3, Iss 3, p e41 (2007)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2622254","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC1828700","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1828700","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1828700","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/641c8110-aad1-11de-bc73-000ea68e967b","is_oa":false,"landing_page_url":"https://researchprofiles.ku.dk/da/publications/641c8110-aad1-11de-bc73-000ea68e967b","pdf_url":null,"source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Krishna , S , Maslov , S & Sneppen , K 2007 , ' UV-induced mutagenesis in Escherichia coli SOS response : A quantitative model ' , PLoS Computational Biology , vol. 3 , no. 3 , pp. 451-462 . https://doi.org/10.1371/journal.pcbi.0030041","raw_type":"article"},{"id":"pmh:oai:pure.atira.dk:publications/641c8110-aad1-11de-bc73-000ea68e967b","is_oa":false,"landing_page_url":"https://curis.ku.dk/portal/da/publications/uvinduced-mutagenesis-in-escherichia-coli-sos-response(641c8110-aad1-11de-bc73-000ea68e967b).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Krishna , S , Maslov , S & Sneppen , K 2007 , ' UV-induced mutagenesis in Escherichia coli SOS response : A quantitative model ' , PLoS Computational Biology , vol. 3 , no. 3 , pp. 451-462 . https://doi.org/10.1371/journal.pcbi.0030041","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.0030041","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.0030041","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.0030041&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2542161959","display_name":null,"funder_award_id":"DE-AC02-98CH10886","funder_id":"https://openalex.org/F4320338289","funder_display_name":"Brookhaven National Laboratory"},{"id":"https://openalex.org/G3850726219","display_name":null,"funder_award_id":"AC02-98CH10886","funder_id":"https://openalex.org/F4320338289","funder_display_name":"Brookhaven National Laboratory"},{"id":"https://openalex.org/G5378045775","display_name":null,"funder_award_id":"AC02-98CH10886","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6525575301","display_name":null,"funder_award_id":"DE-AC02-98CH10886","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6558272803","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320320943","display_name":"Danmarks Grundforskningsfond","ror":"https://ror.org/00znyv691"},{"id":"https://openalex.org/F4320338289","display_name":"Brookhaven National Laboratory","ror":"https://ror.org/02ex6cf31"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1966821124.pdf","grobid_xml":"https://content.openalex.org/works/W1966821124.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W75642985","https://openalex.org/W1497274060","https://openalex.org/W1584011323","https://openalex.org/W1813259844","https://openalex.org/W1984459901","https://openalex.org/W1990010457","https://openalex.org/W1996264210","https://openalex.org/W2000486309","https://openalex.org/W2014442287","https://openalex.org/W2022496556","https://openalex.org/W2023990700","https://openalex.org/W2024809219","https://openalex.org/W2031010426","https://openalex.org/W2033506862","https://openalex.org/W2040149655","https://openalex.org/W2041770319","https://openalex.org/W2042521051","https://openalex.org/W2068572804","https://openalex.org/W2079688783","https://openalex.org/W2079866816","https://openalex.org/W2080283770","https://openalex.org/W2083354279","https://openalex.org/W2091548113","https://openalex.org/W2111745935","https://openalex.org/W2115952866","https://openalex.org/W2128960998","https://openalex.org/W2130441748","https://openalex.org/W2143426522","https://openalex.org/W2153418663","https://openalex.org/W2169511711","https://openalex.org/W2277894179"],"related_works":["https://openalex.org/W2054750250","https://openalex.org/W2223128171","https://openalex.org/W2118891209","https://openalex.org/W2067756591","https://openalex.org/W3118750904","https://openalex.org/W2398355375","https://openalex.org/W2085233792","https://openalex.org/W2085831108","https://openalex.org/W2119192147","https://openalex.org/W2085407738"],"abstract_inverted_index":{"Escherichia":[0],"coli":[1],"bacteria":[2],"respond":[3],"to":[4,157],"DNA":[5],"damage":[6,59],"by":[7,20,41,61],"a":[8,31,53,66,78,87,98],"highly":[9],"orchestrated":[10],"series":[11],"of":[12,34,55,73,81,92,101,106,115,117,134,151],"events":[13],"known":[14],"as":[15],"the":[16,35,42,62,71,102,107,111,118,126,132,137,149],"SOS":[17,37,108,138],"response,":[18,38],"regulated":[19],"transcription":[21],"factors,":[22],"protein-protein":[23],"binding,":[24],"and":[25,65,90,104],"active":[26],"protein":[27],"degradation.":[28],"We":[29],"present":[30],"dynamical":[32],"model":[33,96],"UV-induced":[36],"incorporating":[39],"mutagenesis":[40,50],"error-prone":[43],"polymerase,":[44],"Pol":[45,93,155],"V.":[46,94],"In":[47,121],"our":[48],"model,":[49],"depends":[51],"on":[52],"combination":[54],"two":[56],"key":[57],"processes:":[58],"counting":[60],"replication":[63],"forks":[64],"long-term":[67],"memory":[68],"associated":[69],"with":[70],"accumulation":[72],"UmuD'.":[74],"Together,":[75],"these":[76],"provide":[77],"tight":[79],"regulation":[80],"mutagenesis,":[82],"resulting,":[83],"we":[84,123],"show,":[85],"in":[86,131,136],"\"digital\"":[88],"turn-on":[89],"turn-off":[91],"Our":[95],"provides":[97],"compact":[99],"view":[100],"topology":[103],"design":[105],"network,":[109],"pinpointing":[110],"specific":[112],"functional":[113],"role":[114],"each":[116],"regulatory":[119],"processes.":[120],"particular,":[122],"suggest":[124],"that":[125],"recently":[127],"observed":[128],"second":[129],"peak":[130],"activity":[133],"promoters":[135],"regulon":[139],"(Friedman":[140],"et":[141],"al.,":[142],"2005,":[143],"PLoS":[144],"Biology":[145],"3(7):":[146],"e238)":[147],"is":[148],"result":[150],"positive":[152],"feedback":[153],"from":[154],"V":[156],"RecA":[158],"filaments.":[159]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":3}],"updated_date":"2026-05-22T09:01:20.584952","created_date":"2025-10-10T00:00:00"}
