{"id":"https://openalex.org/W2099969687","doi":"https://doi.org/10.1371/journal.pcbi.0030012","title":"From Bytes to Bedside: Data Integration and Computational Biology for Translational Cancer Research","display_name":"From Bytes to Bedside: Data Integration and Computational Biology for Translational Cancer Research","publication_year":2007,"publication_date":"2007-02-20","ids":{"openalex":"https://openalex.org/W2099969687","doi":"https://doi.org/10.1371/journal.pcbi.0030012","mag":"2099969687","pmid":"https://pubmed.ncbi.nlm.nih.gov/17319736"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.0030012","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.0030012","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.0030012&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.0030012&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035882281","display_name":"Jomol Mathew","orcid":"https://orcid.org/0000-0002-5229-4552"},"institutions":[{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jomol P Mathew","raw_affiliation_strings":["Dana-Farber Cancer Institute, Boston, Massachusetts, United States of America. Jomol_Mathew@dfci.harvard.edu","Dana Farber Cancer Institute, Boston, Massachusetts, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dana-Farber Cancer Institute, Boston, Massachusetts, United States of America. Jomol_Mathew@dfci.harvard.edu","institution_ids":["https://openalex.org/I4210117453"]},{"raw_affiliation_string":"Dana Farber Cancer Institute, Boston, Massachusetts, United States of America","institution_ids":["https://openalex.org/I4210117453"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053532132","display_name":"Barry S. Taylor","orcid":"https://orcid.org/0000-0002-3355-9471"},"institutions":[{"id":"https://openalex.org/I1334819555","display_name":"Memorial Sloan Kettering Cancer Center","ror":"https://ror.org/02yrq0923","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1334819555"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Barry S Taylor","raw_affiliation_strings":["Cornell University","Memorial Sloan-Kettering Cancer Center","University of Michigan, Ann Arbor"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cornell University","institution_ids":["https://openalex.org/I205783295"]},{"raw_affiliation_string":"Memorial Sloan-Kettering Cancer Center","institution_ids":["https://openalex.org/I1334819555"]},{"raw_affiliation_string":"University of Michigan, Ann Arbor","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010789029","display_name":"Gary D. Bader","orcid":"https://orcid.org/0000-0003-0185-8861"},"institutions":[{"id":"https://openalex.org/I1334819555","display_name":"Memorial Sloan Kettering Cancer Center","ror":"https://ror.org/02yrq0923","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1334819555"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Gary D Bader","raw_affiliation_strings":["Memorial Sloan-Kettering Cancer Center","University of Toronto"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Memorial Sloan-Kettering Cancer Center","institution_ids":["https://openalex.org/I1334819555"]},{"raw_affiliation_string":"University of Toronto","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057965099","display_name":"Saiju Pyarajan","orcid":"https://orcid.org/0000-0002-9047-3762"},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Saiju Pyarajan","raw_affiliation_strings":["New York University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"New York University","institution_ids":["https://openalex.org/I57206974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037919963","display_name":"Marco Antoniotti","orcid":"https://orcid.org/0000-0002-2823-6838"},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]},{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT","US"],"is_corresponding":false,"raw_author_name":"Marco Antoniotti","raw_affiliation_strings":["New York University","University of Milan - Bicocca"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"New York University","institution_ids":["https://openalex.org/I57206974"]},{"raw_affiliation_string":"University of Milan - Bicocca","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003311852","display_name":"Arul M. Chinnaiyan","orcid":"https://orcid.org/0000-0001-9282-3415"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Arul M Chinnaiyan","raw_affiliation_strings":["University of Michigan , Ann Arbor"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Michigan , Ann Arbor","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008166270","display_name":"Chris Sander","orcid":"https://orcid.org/0000-0001-6059-6270"},"institutions":[{"id":"https://openalex.org/I1334819555","display_name":"Memorial Sloan Kettering Cancer Center","ror":"https://ror.org/02yrq0923","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1334819555"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chris Sander","raw_affiliation_strings":["Memorial Sloan- Kettering Cancer Center"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Memorial Sloan- Kettering Cancer Center","institution_ids":["https://openalex.org/I1334819555"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063147878","display_name":"Steven J. Burakoff","orcid":null},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven J Burakoff","raw_affiliation_strings":["New York University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"New York University","institution_ids":["https://openalex.org/I57206974"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053379558","display_name":"Bud Mishra","orcid":null},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bud Mishra","raw_affiliation_strings":["New York University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"New York University","institution_ids":["https://openalex.org/I57206974"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5035882281"],"corresponding_institution_ids":["https://openalex.org/I4210117453"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":3.2334,"has_fulltext":true,"cited_by_count":73,"citation_normalized_percentile":{"value":0.93160202,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"3","issue":"2","first_page":"e12","last_page":"e12"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6575678586959839},{"id":"https://openalex.org/keywords/translational-research","display_name":"Translational research","score":0.631517767906189},{"id":"https://openalex.org/keywords/translational-science","display_name":"Translational science","score":0.6156731247901917},{"id":"https://openalex.org/keywords/standardization","display_name":"Standardization","score":0.5943452715873718},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5941396951675415},{"id":"https://openalex.org/keywords/translational-bioinformatics","display_name":"Translational bioinformatics","score":0.5615479946136475},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4931585192680359},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.48948967456817627},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.47221022844314575},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.45537006855010986},{"id":"https://openalex.org/keywords/medical-research","display_name":"Medical research","score":0.44512176513671875},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4402835965156555},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.4319473206996918},{"id":"https://openalex.org/keywords/modelling-biological-systems","display_name":"Modelling biological systems","score":0.41137248277664185},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3765420913696289},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3042650818824768},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.2988813519477844},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.22591722011566162},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1988086700439453},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.14083632826805115}],"concepts":[{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6575678586959839},{"id":"https://openalex.org/C128544194","wikidata":"https://www.wikidata.org/wiki/Q474859","display_name":"Translational research","level":2,"score":0.631517767906189},{"id":"https://openalex.org/C57634137","wikidata":"https://www.wikidata.org/wiki/Q474859","display_name":"Translational science","level":2,"score":0.6156731247901917},{"id":"https://openalex.org/C188087704","wikidata":"https://www.wikidata.org/wiki/Q369577","display_name":"Standardization","level":2,"score":0.5943452715873718},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5941396951675415},{"id":"https://openalex.org/C163293594","wikidata":"https://www.wikidata.org/wiki/Q7834541","display_name":"Translational bioinformatics","level":5,"score":0.5615479946136475},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4931585192680359},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.48948967456817627},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.47221022844314575},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.45537006855010986},{"id":"https://openalex.org/C106977388","wikidata":"https://www.wikidata.org/wiki/Q2752427","display_name":"Medical research","level":2,"score":0.44512176513671875},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4402835965156555},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.4319473206996918},{"id":"https://openalex.org/C137866125","wikidata":"https://www.wikidata.org/wiki/Q4299308","display_name":"Modelling biological systems","level":3,"score":0.41137248277664185},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3765420913696289},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3042650818824768},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.2988813519477844},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.22591722011566162},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1988086700439453},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.14083632826805115},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C150903083","wikidata":"https://www.wikidata.org/wiki/Q7108","display_name":"Biotechnology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008495","descriptor_name":"Medical Oncology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008495","descriptor_name":"Medical Oncology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008495","descriptor_name":"Medical Oncology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008495","descriptor_name":"Medical Oncology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D008495","descriptor_name":"Medical Oncology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D008495","descriptor_name":"Medical Oncology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D012106","descriptor_name":"Research","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D012106","descriptor_name":"Research","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D012106","descriptor_name":"Research","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.0030012","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.0030012","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.0030012&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:17319736","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17319736","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:europepmc.org:421018","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1808026","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:RePEc:plo:pcbi00:0030012","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.0030012","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:boa.unimib.it:10281/8622","is_oa":true,"landing_page_url":"http://hdl.handle.net/10281/8622","pdf_url":null,"source":{"id":"https://openalex.org/S4306401259","display_name":"BOA (University of Milano-Bicocca)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I66752286","host_organization_name":"University of Milano-Bicocca","host_organization_lineage":["https://openalex.org/I66752286"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:17269bb6ddd042938ec59cf52c0b7730","is_oa":true,"landing_page_url":"https://doaj.org/article/17269bb6ddd042938ec59cf52c0b7730","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 3, Iss 2, p e12 (2007)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.0030012","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.0030012","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.0030012&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2099969687.pdf","grobid_xml":"https://content.openalex.org/works/W2099969687.grobid-xml"},"referenced_works_count":105,"referenced_works":["https://openalex.org/W144423133","https://openalex.org/W145441032","https://openalex.org/W1481324524","https://openalex.org/W1486283310","https://openalex.org/W1509900513","https://openalex.org/W1510819614","https://openalex.org/W1607267312","https://openalex.org/W1790314132","https://openalex.org/W1868943464","https://openalex.org/W1906717577","https://openalex.org/W1964812149","https://openalex.org/W1967990571","https://openalex.org/W1969889522","https://openalex.org/W1970156673","https://openalex.org/W1970329583","https://openalex.org/W1975407466","https://openalex.org/W1976419663","https://openalex.org/W1977372263","https://openalex.org/W1977918192","https://openalex.org/W1978576205","https://openalex.org/W1981593008","https://openalex.org/W1987899782","https://openalex.org/W1989076816","https://openalex.org/W2004078197","https://openalex.org/W2004704197","https://openalex.org/W2005484894","https://openalex.org/W2006933206","https://openalex.org/W2011566941","https://openalex.org/W2014582878","https://openalex.org/W2015009944","https://openalex.org/W2015556811","https://openalex.org/W2015705446","https://openalex.org/W2018843280","https://openalex.org/W2020541351","https://openalex.org/W2021239799","https://openalex.org/W2027689967","https://openalex.org/W2031095666","https://openalex.org/W2032664421","https://openalex.org/W2034784092","https://openalex.org/W2036902495","https://openalex.org/W2037187863","https://openalex.org/W2040191060","https://openalex.org/W2042545888","https://openalex.org/W2043017344","https://openalex.org/W2043904301","https://openalex.org/W2045420532","https://openalex.org/W2047446484","https://openalex.org/W2050163545","https://openalex.org/W2052859476","https://openalex.org/W2057761395","https://openalex.org/W2058401000","https://openalex.org/W2059572899","https://openalex.org/W2062290101","https://openalex.org/W2065080358","https://openalex.org/W2075093214","https://openalex.org/W2094285977","https://openalex.org/W2094455233","https://openalex.org/W2096721473","https://openalex.org/W2100471807","https://openalex.org/W2101298061","https://openalex.org/W2106297623","https://openalex.org/W2106647330","https://openalex.org/W2106876831","https://openalex.org/W2109363337","https://openalex.org/W2112078820","https://openalex.org/W2112811019","https://openalex.org/W2119224628","https://openalex.org/W2120016245","https://openalex.org/W2121158863","https://openalex.org/W2123280311","https://openalex.org/W2124201592","https://openalex.org/W2125323026","https://openalex.org/W2127053639","https://openalex.org/W2128748524","https://openalex.org/W2130494035","https://openalex.org/W2130979840","https://openalex.org/W2131989143","https://openalex.org/W2133401281","https://openalex.org/W2134394193","https://openalex.org/W2134672568","https://openalex.org/W2135488124","https://openalex.org/W2137082708","https://openalex.org/W2137297899","https://openalex.org/W2140946052","https://openalex.org/W2142237411","https://openalex.org/W2147714160","https://openalex.org/W2148609654","https://openalex.org/W2149807648","https://openalex.org/W2150114991","https://openalex.org/W2151271025","https://openalex.org/W2158455641","https://openalex.org/W2160543635","https://openalex.org/W2161441225","https://openalex.org/W2162872669","https://openalex.org/W2163485494","https://openalex.org/W2165923048","https://openalex.org/W2166898290","https://openalex.org/W2168223461","https://openalex.org/W2170076251","https://openalex.org/W2171088586","https://openalex.org/W2415883445","https://openalex.org/W2910065277","https://openalex.org/W4231404455","https://openalex.org/W4247420482","https://openalex.org/W4255855797"],"related_works":["https://openalex.org/W2145770068","https://openalex.org/W2374272506","https://openalex.org/W2054163850","https://openalex.org/W1977115490","https://openalex.org/W2884508394","https://openalex.org/W2892290702","https://openalex.org/W1566426671","https://openalex.org/W2376764430","https://openalex.org/W2130279925","https://openalex.org/W2201464266"],"abstract_inverted_index":{"ajor":[0],"advances":[1],"in":[2],"genome":[3],"science":[4],"and":[5,18,25,29,49,56,76,89,95,105,113],"molecular":[6,30,88],"technologies":[7],"provide":[8],"new":[9,34,70],"opportunities":[10],"at":[11],"the":[12,99],"interface":[13],"between":[14],"basic":[15],"biological":[16,77],"research":[17],"medical":[19],"practice.":[20],"The":[21],"unprecedented":[22],"completeness,":[23],"accuracy,":[24],"volume":[26],"of":[27,36,46,52,65,72,101],"genomic":[28],"data":[31,47],"necessitate":[32],"a":[33],"kind":[35],"computational":[37,81,96],"biology":[38],"for":[39,58,83],"translational":[40],"research.":[41],"Key":[42],"challenges":[43],"are":[44,69],"standardization":[45],"capture":[48],"communication,":[50],"organization":[51],"easily":[53],"accessible":[54],"repositories,":[55],"algorithms":[57],"integrated":[59],"analysis":[60],"based":[61],"on":[62],"heterogeneous":[63],"sources":[64],"information.":[66],"Also":[67],"required":[68],"ways":[71],"using":[73],"complementary":[74],"clinical":[75],"data,":[78],"such":[79],"as":[80,107,109],"methods":[82,97],"predicting":[84],"disease":[85],"phenotype":[86],"from":[87],"genetic":[90],"profiling.":[91],"New":[92],"combined":[93],"experimental":[94],"hold":[98],"promise":[100],"more":[102,110],"accurate":[103],"diagnosis":[104],"prognosis":[106],"well":[108],"effective":[111],"prevention":[112],"therapy.":[114]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":10},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":7}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
