{"id":"https://openalex.org/W2079672926","doi":"https://doi.org/10.1371/journal.pcbi.0020118","title":"Imitating Manual Curation of Text-Mined Facts in Biomedicine","display_name":"Imitating Manual Curation of Text-Mined Facts in Biomedicine","publication_year":2006,"publication_date":"2006-09-06","ids":{"openalex":"https://openalex.org/W2079672926","doi":"https://doi.org/10.1371/journal.pcbi.0020118","mag":"2079672926","pmid":"https://pubmed.ncbi.nlm.nih.gov/16965176"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.0020118","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.0020118","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.0020118&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.0020118&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002036038","display_name":"Raul Rodriguez\u2010Esteban","orcid":"https://orcid.org/0000-0002-9494-9609"},"institutions":[{"id":"https://openalex.org/I4210155419","display_name":"Center for Systems Biology","ror":"https://ror.org/05r3dyn47","country_code":"US","type":"facility","lineage":["https://openalex.org/I136199984","https://openalex.org/I4210087915","https://openalex.org/I4210155419","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Raul Rodriguez-Esteban","raw_affiliation_strings":["Department of Electrical Engineering, Columbia University, New York, New York, United States of America","Center for Computational Biology and Bioinformatics, Joint Centers for Systems Biology, Columbia University, New York, New York, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering, Columbia University, New York, New York, United States of America","institution_ids":["https://openalex.org/I78577930"]},{"raw_affiliation_string":"Center for Computational Biology and Bioinformatics, Joint Centers for Systems Biology, Columbia University, New York, New York, United States of America","institution_ids":["https://openalex.org/I4210155419","https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029181430","display_name":"Ivan Iossifov","orcid":"https://orcid.org/0000-0003-0035-8312"},"institutions":[{"id":"https://openalex.org/I2799503643","display_name":"Columbia University Irving Medical Center","ror":"https://ror.org/01esghr10","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799503643"]},{"id":"https://openalex.org/I4210155419","display_name":"Center for Systems Biology","ror":"https://ror.org/05r3dyn47","country_code":"US","type":"facility","lineage":["https://openalex.org/I136199984","https://openalex.org/I4210087915","https://openalex.org/I4210155419","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ivan Iossifov","raw_affiliation_strings":["","Center for Computational Biology and Bioinformatics, Joint Centers for Systems Biology, Columbia University, New York, New York, United States of America","Department of Biomedical Informatics, Columbia University Medical Center, Columbia University, New York, New York, United States of America"],"affiliations":[{"raw_affiliation_string":"","institution_ids":[]},{"raw_affiliation_string":"Center for Computational Biology and Bioinformatics, Joint Centers for Systems Biology, Columbia University, New York, New York, United States of America","institution_ids":["https://openalex.org/I4210155419","https://openalex.org/I78577930"]},{"raw_affiliation_string":"Department of Biomedical Informatics, Columbia University Medical Center, Columbia University, New York, New York, United States of America","institution_ids":["https://openalex.org/I2799503643"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004739989","display_name":"Andrey Rzhetsky","orcid":"https://orcid.org/0000-0001-6959-7405"},"institutions":[{"id":"https://openalex.org/I2799503643","display_name":"Columbia University Irving Medical Center","ror":"https://ror.org/01esghr10","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799503643"]},{"id":"https://openalex.org/I4210155419","display_name":"Center for Systems Biology","ror":"https://ror.org/05r3dyn47","country_code":"US","type":"facility","lineage":["https://openalex.org/I136199984","https://openalex.org/I4210087915","https://openalex.org/I4210155419","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Andrey Rzhetsky","raw_affiliation_strings":["Department of Biological Sciences, Columbia University, New York, New York, United States of America","Department of Biomedical Informatics, Columbia University Medical Center, Columbia University, New York, New York, United States of America","Center for Computational Biology and Bioinformatics, Joint Centers for Systems Biology, Columbia University, New York, New York, United States of America","Judith P. Sulzberger, MD Columbia Genome Center, Columbia University Medical Center, Columbia University, New York, New York, United States of America"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Columbia University, New York, New York, United States of America","institution_ids":["https://openalex.org/I78577930"]},{"raw_affiliation_string":"Department of Biomedical Informatics, Columbia University Medical Center, Columbia University, New York, New York, United States of America","institution_ids":["https://openalex.org/I2799503643"]},{"raw_affiliation_string":"Center for Computational Biology and Bioinformatics, Joint Centers for Systems Biology, Columbia University, New York, New York, United States of America","institution_ids":["https://openalex.org/I4210155419","https://openalex.org/I78577930"]},{"raw_affiliation_string":"Judith P. Sulzberger, MD Columbia Genome Center, Columbia University Medical Center, Columbia University, New York, New York, United States of America","institution_ids":["https://openalex.org/I2799503643"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5004739989"],"corresponding_institution_ids":["https://openalex.org/I2799503643","https://openalex.org/I4210155419","https://openalex.org/I78577930"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":2.1796,"has_fulltext":true,"cited_by_count":34,"citation_normalized_percentile":{"value":0.86689084,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"2","issue":"9","first_page":"e118","last_page":"e118"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9833999872207642,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9761999845504761,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7566970586776733},{"id":"https://openalex.org/keywords/biomedicine","display_name":"Biomedicine","score":0.6471183896064758},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.6178240776062012},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5476195216178894},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5384796261787415},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.524057149887085},{"id":"https://openalex.org/keywords/sentence","display_name":"Sentence","score":0.4981379508972168},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.49235570430755615},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.454493910074234},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.427198588848114},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.42424193024635315},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.4206360876560211},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4124802350997925},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.12850245833396912}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7566970586776733},{"id":"https://openalex.org/C66782513","wikidata":"https://www.wikidata.org/wiki/Q864601","display_name":"Biomedicine","level":2,"score":0.6471183896064758},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6178240776062012},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5476195216178894},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5384796261787415},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.524057149887085},{"id":"https://openalex.org/C2777530160","wikidata":"https://www.wikidata.org/wiki/Q41796","display_name":"Sentence","level":2,"score":0.4981379508972168},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.49235570430755615},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.454493910074234},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.427198588848114},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.42424193024635315},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.4206360876560211},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4124802350997925},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.12850245833396912},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003042","descriptor_name":"Cocaine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003042","descriptor_name":"Cocaine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003042","descriptor_name":"Cocaine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":9,"locations":[{"id":"doi:10.1371/journal.pcbi.0020118","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.0020118","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.0020118&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:16965176","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16965176","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:repository.cshl.edu:31302","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402288","display_name":"Cold Spring Harbor Laboratory Institutional Repository (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Paper"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.887.6047","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.887.6047","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://www.researchgate.net/profile/Raul_Rodriguez-Esteban/publication/6826150_Imitating_manual_curation_of_text-mined_facts_in_biomedicine/links/00b7d521f0f7bb52a7000000.pdf","raw_type":"text"},{"id":"pmh:oai:RePEc:plo:pcbi00:0020118","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.0020118","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:fcc986d31c0c4acc907cc5cee0a09d90","is_oa":true,"landing_page_url":"https://doaj.org/article/fcc986d31c0c4acc907cc5cee0a09d90","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 2, Iss 9, p e118 (2006)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2622110","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC1560402","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/152809","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Imitating_Manual_Curation_of_Text_Mined_Facts_in_Biomedicine/152809","pdf_url":null,"source":{"id":"https://openalex.org/S4306400572","display_name":"OPAL (Open@LaTrobe) (La Trobe University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I196829312","host_organization_name":"La Trobe University","host_organization_lineage":["https://openalex.org/I196829312"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:1560402","is_oa":true,"landing_page_url":"http://doi.org/10.1371/journal.pcbi.0020118","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.0020118","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.0020118","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.0020118&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.6399999856948853,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G1547533500","display_name":"ITR/IM+AP: Automated Compilation and Computational Analysis of Regulatory Networks","funder_award_id":"0121687","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G297152156","display_name":null,"funder_award_id":"CA121852","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4044384731","display_name":null,"funder_award_id":"U54 CA121852","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4713059963","display_name":null,"funder_award_id":"FA8750","funder_id":"https://openalex.org/F4320332180","funder_display_name":"Defense Advanced Research Projects Agency"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332180","display_name":"Defense Advanced Research Projects Agency","ror":"https://ror.org/02caytj08"},{"id":"https://openalex.org/F4320332815","display_name":"Advanced Research Projects Agency","ror":"https://ror.org/02caytj08"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2079672926.pdf","grobid_xml":"https://content.openalex.org/works/W2079672926.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W46849891","https://openalex.org/W1509562192","https://openalex.org/W1549656520","https://openalex.org/W1563088657","https://openalex.org/W1567787856","https://openalex.org/W1574862351","https://openalex.org/W1726370773","https://openalex.org/W1773803948","https://openalex.org/W1790194223","https://openalex.org/W1969540269","https://openalex.org/W1983453172","https://openalex.org/W1995875735","https://openalex.org/W1998451680","https://openalex.org/W2001619934","https://openalex.org/W2001771035","https://openalex.org/W2010571954","https://openalex.org/W2032558547","https://openalex.org/W2033021180","https://openalex.org/W2037835429","https://openalex.org/W2041281312","https://openalex.org/W2041905826","https://openalex.org/W2071635724","https://openalex.org/W2078716961","https://openalex.org/W2090956156","https://openalex.org/W2099111195","https://openalex.org/W2109070394","https://openalex.org/W2137881949","https://openalex.org/W2145482038","https://openalex.org/W2156909104","https://openalex.org/W2157825442","https://openalex.org/W2158505321","https://openalex.org/W2159637323","https://openalex.org/W2478708596","https://openalex.org/W2497735908","https://openalex.org/W2993383518","https://openalex.org/W3182208082","https://openalex.org/W4251079740","https://openalex.org/W4299551239"],"related_works":["https://openalex.org/W2251332378","https://openalex.org/W122651434","https://openalex.org/W3004288456","https://openalex.org/W2106349067","https://openalex.org/W4362496998","https://openalex.org/W2184397297","https://openalex.org/W2798423693","https://openalex.org/W1663435917","https://openalex.org/W1496929818","https://openalex.org/W2094989391"],"abstract_inverted_index":{"Text-mining":[0],"algorithms":[1,71],"make":[2],"mistakes":[3],"in":[4],"extracting":[5],"facts":[6,54,77],"from":[7],"natural-language":[8],"texts.":[9],"In":[10],"biomedical":[11],"applications,":[12],"which":[13],"rely":[14],"on":[15],"use":[16,110],"of":[17,35,47,70,76,86,94,114,153],"text-mined":[18,155],"data,":[19],"it":[20],"is":[21,32,105],"critical":[22],"to":[23,101,109,117],"assess":[24],"the":[25,30,131,150,154,158],"quality":[26],"(the":[27],"probability":[28],"that":[29,72,93,128],"message":[31],"correctly":[33],"extracted)":[34],"individual":[36,141],"facts--to":[37],"resolve":[38],"data":[39],"conflicts":[40],"and":[41,66],"inconsistencies.":[42],"Using":[43],"a":[44,68,111],"large":[45],"set":[46],"almost":[48],"100,000":[49],"manually":[50],"produced":[51],"evaluations":[52],"(most":[53],"were":[55,107],"independently":[56],"reviewed":[57],"more":[58],"than":[59],"once,":[60],"producing":[61],"independent":[62],"evaluations),":[63],"we":[64,108,122],"implemented":[65],"tested":[67],"collection":[69],"mimic":[73],"human":[74,96,115,142],"evaluation":[75],"provided":[78],"by":[79,148],"an":[80,125,139],"automated":[81,89],"information-extraction":[82],"system.":[83],"The":[84],"performance":[85],"our":[87,95,146],"best":[88],"classifiers":[90],"closely":[91],"approached":[92],"evaluators":[97],"(ROC":[98],"score":[99],"close":[100],"0.95).":[102],"Our":[103],"hypothesis":[104],"that,":[106],"larger":[112],"number":[113],"experts":[116],"evaluate":[118],"any":[119],"given":[120],"sentence,":[121],"could":[123],"implement":[124],"artificial-intelligence":[126],"curator":[127],"would":[129],"perform":[130],"classification":[132],"job":[133],"at":[134],"least":[135],"as":[136,138],"accurately":[137],"average":[140],"evaluator.":[143],"We":[144],"illustrated":[145],"analysis":[147],"visualizing":[149],"predicted":[151],"accuracy":[152],"relations":[156],"involving":[157],"term":[159],"cocaine.":[160]},"counts_by_year":[{"year":2022,"cited_by_count":3},{"year":2020,"cited_by_count":4},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
