{"id":"https://openalex.org/W2134237405","doi":"https://doi.org/10.1371/journal.pcbi.0010044","title":"Modeling the Amplification Dynamics of Human Alu Retrotransposons","display_name":"Modeling the Amplification Dynamics of Human Alu Retrotransposons","publication_year":2005,"publication_date":"2005-09-28","ids":{"openalex":"https://openalex.org/W2134237405","doi":"https://doi.org/10.1371/journal.pcbi.0010044","mag":"2134237405","pmid":"https://pubmed.ncbi.nlm.nih.gov/16201008"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.0010044","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.0010044","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.0010044&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.0010044&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112905745","display_name":"Dale J. Hedges","orcid":null},"institutions":[{"id":"https://openalex.org/I121820613","display_name":"Louisiana State University","ror":"https://ror.org/05ect4e57","country_code":"US","type":"education","lineage":["https://openalex.org/I121820613"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dale J Hedges","raw_affiliation_strings":["Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio-Modular Microsystems, Louisiana State University, Baton Rouge, Louisiana, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio-Modular Microsystems, Louisiana State University, Baton Rouge, Louisiana, United States of America","institution_ids":["https://openalex.org/I121820613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073952173","display_name":"Richard Cordaux","orcid":"https://orcid.org/0000-0003-4997-735X"},"institutions":[{"id":"https://openalex.org/I121820613","display_name":"Louisiana State University","ror":"https://ror.org/05ect4e57","country_code":"US","type":"education","lineage":["https://openalex.org/I121820613"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard Cordaux","raw_affiliation_strings":["Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio-Modular Microsystems, Louisiana State University, Baton Rouge, Louisiana, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio-Modular Microsystems, Louisiana State University, Baton Rouge, Louisiana, United States of America","institution_ids":["https://openalex.org/I121820613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024706936","display_name":"Jinchuan Xing","orcid":"https://orcid.org/0000-0001-6469-8733"},"institutions":[{"id":"https://openalex.org/I121820613","display_name":"Louisiana State University","ror":"https://ror.org/05ect4e57","country_code":"US","type":"education","lineage":["https://openalex.org/I121820613"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jinchuan Xing","raw_affiliation_strings":["Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio-Modular Microsystems, Louisiana State University, Baton Rouge, Louisiana, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio-Modular Microsystems, Louisiana State University, Baton Rouge, Louisiana, United States of America","institution_ids":["https://openalex.org/I121820613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035739423","display_name":"David J. Witherspoon","orcid":null},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David J Witherspoon","raw_affiliation_strings":["Department of Human Genetics, University of Utah Health Sciences Center, Salt Lake City, Utah, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Human Genetics, University of Utah Health Sciences Center, Salt Lake City, Utah, United States of America","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027476218","display_name":"Alan R. Rogers","orcid":"https://orcid.org/0000-0003-3987-3346"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alan R Rogers","raw_affiliation_strings":["Department of Anthropology, University of Utah, Salt Lake City, Utah, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Anthropology, University of Utah, Salt Lake City, Utah, United States of America","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090698697","display_name":"Lynn B. Jorde","orcid":"https://orcid.org/0000-0002-0606-1862"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lynn B Jorde","raw_affiliation_strings":["Department of Human Genetics, University of Utah Health Sciences Center, Salt Lake City, Utah, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Human Genetics, University of Utah Health Sciences Center, Salt Lake City, Utah, United States of America","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048181679","display_name":"Mark A. Batzer","orcid":"https://orcid.org/0000-0001-5699-863X"},"institutions":[{"id":"https://openalex.org/I121820613","display_name":"Louisiana State University","ror":"https://ror.org/05ect4e57","country_code":"US","type":"education","lineage":["https://openalex.org/I121820613"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mark A Batzer","raw_affiliation_strings":["Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio-Modular Microsystems, Louisiana State University, Baton Rouge, Louisiana, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio-Modular Microsystems, Louisiana State University, Baton Rouge, Louisiana, United States of America","institution_ids":["https://openalex.org/I121820613"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5048181679"],"corresponding_institution_ids":["https://openalex.org/I121820613"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":3.6838,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.92992548,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"1","issue":"4","first_page":"e44","last_page":"e44"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9912999868392944,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10978","display_name":"Prenatal Screening and Diagnostics","score":0.940500020980835,"subfield":{"id":"https://openalex.org/subfields/2735","display_name":"Pediatrics, Perinatology and Child Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/retrotransposon","display_name":"Retrotransposon","score":0.891033411026001},{"id":"https://openalex.org/keywords/alu-element","display_name":"Alu element","score":0.7544286847114563},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5202116370201111},{"id":"https://openalex.org/keywords/dynamics","display_name":"Dynamics (music)","score":0.4345772862434387},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4196535348892212},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.3235241174697876},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2888000011444092},{"id":"https://openalex.org/keywords/human-genome","display_name":"Human genome","score":0.24585089087486267},{"id":"https://openalex.org/keywords/transposable-element","display_name":"Transposable element","score":0.1911090910434723},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.1590884029865265},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.1196523904800415},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.077371746301651}],"concepts":[{"id":"https://openalex.org/C7029365","wikidata":"https://www.wikidata.org/wiki/Q413988","display_name":"Retrotransposon","level":5,"score":0.891033411026001},{"id":"https://openalex.org/C48931128","wikidata":"https://www.wikidata.org/wiki/Q412199","display_name":"Alu element","level":5,"score":0.7544286847114563},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5202116370201111},{"id":"https://openalex.org/C145912823","wikidata":"https://www.wikidata.org/wiki/Q113558","display_name":"Dynamics (music)","level":2,"score":0.4345772862434387},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4196535348892212},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3235241174697876},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2888000011444092},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.24585089087486267},{"id":"https://openalex.org/C4918238","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"Transposable element","level":4,"score":0.1911090910434723},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.1590884029865265},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.1196523904800415},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.077371746301651},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005784","descriptor_name":"Gene Amplification","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005784","descriptor_name":"Gene Amplification","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005784","descriptor_name":"Gene Amplification","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018626","descriptor_name":"Retroelements","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018626","descriptor_name":"Retroelements","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018626","descriptor_name":"Retroelements","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020087","descriptor_name":"Alu Elements","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020087","descriptor_name":"Alu Elements","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020087","descriptor_name":"Alu Elements","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":9,"locations":[{"id":"doi:10.1371/journal.pcbi.0010044","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.0010044","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.0010044&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:16201008","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16201008","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:digitalcommons.lsu.edu:biosci_pubs-1218","is_oa":false,"landing_page_url":"https://digitalcommons.lsu.edu/biosci_pubs/219","pdf_url":null,"source":{"id":"https://openalex.org/S4210169993","display_name":"Civil War Book Review","issn_l":"1528-6592","issn":["1528-6592"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310315936","host_organization_name":"Louisiana State University","host_organization_lineage":["https://openalex.org/P4310315936"],"host_organization_lineage_names":["Louisiana State University"],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Publications","raw_type":"text"},{"id":"pmh:oai:RePEc:plo:pcbi00:0010044","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.0010044","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:7932d46c2d4a4589bcd6952b4d331465","is_oa":true,"landing_page_url":"https://doaj.org/article/7932d46c2d4a4589bcd6952b4d331465","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 1, Iss 4, p e44 (2005)","raw_type":"article"},{"id":"pmh:oai:doaj.org/article:a397a8b8007749cdaf1f382a148d0d89","is_oa":true,"landing_page_url":"https://doaj.org/article/a397a8b8007749cdaf1f382a148d0d89","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 1, Iss 4, p e44 (2005)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/153144","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Modeling_the_Amplification_Dynamics_of_Human_Alu_Retrotransposons/153144","pdf_url":null,"source":{"id":"https://openalex.org/S4306402621","display_name":"INDIGO (University of Illinois at Chicago)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I39422238","host_organization_name":"University of Illinois Chicago","host_organization_lineage":["https://openalex.org/I39422238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:pubmedcentral.nih.gov:1239904","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1239904","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:repository.lsu.edu:biosci_pubs-1218","is_oa":false,"landing_page_url":"https://repository.lsu.edu/biosci_pubs/219","pdf_url":null,"source":{"id":"https://openalex.org/S4210169993","display_name":"Civil War Book Review","issn_l":"1528-6592","issn":["1528-6592"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310315936","host_organization_name":"Louisiana State University","host_organization_lineage":["https://openalex.org/P4310315936"],"host_organization_lineage_names":["Louisiana State University"],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Publications","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.0010044","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.0010044","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.0010044&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4000000059604645,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G2993031729","display_name":"Collaborative Research: Mobile Elements and Primate Evolution","funder_award_id":"0218370","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4277101212","display_name":null,"funder_award_id":"GM59290","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4303630077","display_name":null,"funder_award_id":"R01 GM059290","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G4746751292","display_name":null,"funder_award_id":"RO1 GM59290","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5120179915","display_name":"Louisiana's Strategic Infrastructure Improvement","funder_award_id":"0346411","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5651028162","display_name":null,"funder_award_id":"R01GM59290","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G7212356299","display_name":"Collaborative Research: Mobile Elements and  Primate Evolution","funder_award_id":"0218338","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8295508513","display_name":null,"funder_award_id":"EPS-0346411","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320309392","display_name":"Louisiana Board of Regents","ror":"https://ror.org/00jv89z46"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2134237405.pdf","grobid_xml":"https://content.openalex.org/works/W2134237405.grobid-xml"},"referenced_works_count":63,"referenced_works":["https://openalex.org/W105985058","https://openalex.org/W1506426118","https://openalex.org/W1520376974","https://openalex.org/W1570376951","https://openalex.org/W1902190630","https://openalex.org/W1926616870","https://openalex.org/W1928220195","https://openalex.org/W1939214939","https://openalex.org/W1964322053","https://openalex.org/W1964858855","https://openalex.org/W1965074434","https://openalex.org/W1966285167","https://openalex.org/W1978325169","https://openalex.org/W1981262837","https://openalex.org/W1981397431","https://openalex.org/W1988090113","https://openalex.org/W1988495745","https://openalex.org/W1990324919","https://openalex.org/W1996086595","https://openalex.org/W1996770550","https://openalex.org/W1999128707","https://openalex.org/W1999355295","https://openalex.org/W2007589425","https://openalex.org/W2011362085","https://openalex.org/W2026004154","https://openalex.org/W2032547380","https://openalex.org/W2039862276","https://openalex.org/W2040637308","https://openalex.org/W2040865473","https://openalex.org/W2049193305","https://openalex.org/W2050557699","https://openalex.org/W2052659332","https://openalex.org/W2054143743","https://openalex.org/W2054745526","https://openalex.org/W2059173951","https://openalex.org/W2059366734","https://openalex.org/W2064629259","https://openalex.org/W2070922541","https://openalex.org/W2075168304","https://openalex.org/W2080252841","https://openalex.org/W2080458946","https://openalex.org/W2084407487","https://openalex.org/W2085151059","https://openalex.org/W2086739233","https://openalex.org/W2092656687","https://openalex.org/W2096005812","https://openalex.org/W2106324626","https://openalex.org/W2118155162","https://openalex.org/W2137433258","https://openalex.org/W2138209388","https://openalex.org/W2142204199","https://openalex.org/W2142928349","https://openalex.org/W2148236292","https://openalex.org/W2148447370","https://openalex.org/W2153586836","https://openalex.org/W2158419786","https://openalex.org/W2160607291","https://openalex.org/W2162273472","https://openalex.org/W2164311122","https://openalex.org/W2168909179","https://openalex.org/W2729878149","https://openalex.org/W4212855844","https://openalex.org/W4246793061"],"related_works":["https://openalex.org/W634912309","https://openalex.org/W2752605106","https://openalex.org/W2006699168","https://openalex.org/W2109533720","https://openalex.org/W2059644280","https://openalex.org/W2098666676","https://openalex.org/W2134237405","https://openalex.org/W2152369882","https://openalex.org/W2578373405","https://openalex.org/W2146078671"],"abstract_inverted_index":{"Retrotransposons":[0],"have":[1],"had":[2],"a":[3,59,100,132,155,166],"considerable":[4],"impact":[5],"on":[6],"the":[7,11,63,74,119,175],"overall":[8],"architecture":[9],"of":[10,19,36,44,62,66,76,108,134,157,165,171,177],"human":[12],"genome.":[13],"Currently,":[14],"there":[15],"are":[16,26,125],"three":[17],"lineages":[18],"retrotransposons":[20],"(Alu,":[21],"L1,":[22],"and":[23,42,56,81,113,128,137],"SVA)":[24],"that":[25,103,164],"believed":[27],"to":[28,141,152],"be":[29,49],"actively":[30],"replicating":[31],"in":[32],"humans.":[33],"While":[34],"estimates":[35],"their":[37],"copy":[38],"number,":[39],"sequence":[40,54,80],"diversity,":[41],"levels":[43],"insertion":[45],"polymorphism":[46],"can":[47,89],"readily":[48],"obtained":[50],"from":[51,85,118,145],"existing":[52,146],"genomic":[53,79],"data":[55,84,143],"population":[57,82],"sampling,":[58],"detailed":[60],"understanding":[61],"temporal":[64],"pattern":[65],"retrotransposon":[67,111],"amplification":[68,93,135,158,173],"remains":[69],"elusive.":[70],"Here":[71],"we":[72,98,149],"pose":[73],"question":[75],"whether,":[77],"using":[78],"frequency":[83],"extant":[86],"taxa,":[87],"one":[88],"adequately":[90],"reconstruct":[91],"historical":[92],"patterns.":[94],"To":[95],"this":[96],"end,":[97],"developed":[99],"computer":[101],"simulation":[102],"incorporates":[104],"several":[105],"known":[106],"aspects":[107],"primate":[109],"Alu":[110,147,172],"biology":[112],"accommodates":[114],"sampling":[115],"effects":[116],"resulting":[117],"methods":[120],"by":[121],"which":[122],"mobile":[123],"elements":[124],"typically":[126],"discovered":[127],"characterized.":[129],"By":[130],"modeling":[131],"number":[133,156],"scenarios":[136,159],"comparing":[138],"simulation-generated":[139],"expectations":[140],"empirical":[142],"gathered":[144],"subfamilies,":[148,162],"were":[150],"able":[151],"statistically":[153],"reject":[154],"for":[160],"individual":[161],"including":[163],"rapid":[167],"expansion":[168],"or":[169],"explosion":[170],"at":[174],"time":[176],"human-chimpanzee":[178],"divergence.":[179]},"counts_by_year":[{"year":2019,"cited_by_count":1}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
