{"id":"https://openalex.org/W22154053","doi":"https://doi.org/10.13097/archive-ouverte/unige:46568","title":"Text mining strategies to support literature-based biocuration","display_name":"Text mining strategies to support literature-based biocuration","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W22154053","doi":"https://doi.org/10.13097/archive-ouverte/unige:46568","mag":"22154053"},"language":"en","primary_location":{"id":"pmh:oai:unige.ch:unige:46568","is_oa":true,"landing_page_url":"https://archive-ouverte.unige.ch/unige:46568","pdf_url":"https://archive-ouverte.unige.ch/unige:46568","source":{"id":"https://openalex.org/S4306402259","display_name":"Archive ouverte UNIGE (University of Geneva)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114457229","host_organization_name":"University of Geneva","host_organization_lineage":["https://openalex.org/I114457229"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/doctoralThesis"},"type":"dissertation","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://archive-ouverte.unige.ch/unige:46568","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022872913","display_name":"Dina Vishnyakova","orcid":"https://orcid.org/0000-0001-9101-5993"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Vishnyakova, Dina","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":["https://openalex.org/A5022872913"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9638000130653381,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.9270080327987671},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7056923508644104},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6574441194534302},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5440123081207275},{"id":"https://openalex.org/keywords/digital-curation","display_name":"Digital curation","score":0.5193480253219604},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.49777868390083313},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4366436302661896},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.42093223333358765},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.41533946990966797},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2740479111671448},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11006227135658264},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.07431244850158691}],"concepts":[{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.9270080327987671},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7056923508644104},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6574441194534302},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5440123081207275},{"id":"https://openalex.org/C2775953033","wikidata":"https://www.wikidata.org/wiki/Q5276060","display_name":"Digital curation","level":2,"score":0.5193480253219604},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.49777868390083313},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4366436302661896},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.42093223333358765},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.41533946990966797},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2740479111671448},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11006227135658264},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.07431244850158691},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:unige.ch:unige:46568","is_oa":true,"landing_page_url":"https://archive-ouverte.unige.ch/unige:46568","pdf_url":"https://archive-ouverte.unige.ch/unige:46568","source":{"id":"https://openalex.org/S4306402259","display_name":"Archive ouverte UNIGE (University of Geneva)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114457229","host_organization_name":"University of Geneva","host_organization_lineage":["https://openalex.org/I114457229"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/doctoralThesis"},{"id":"doi:10.13097/archive-ouverte/unige:46568","is_oa":true,"landing_page_url":"https://doi.org/10.13097/archive-ouverte/unige:46568","pdf_url":null,"source":{"id":"https://openalex.org/S7407051284","display_name":"Uni Genf","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Dissertation"}],"best_oa_location":{"id":"pmh:oai:unige.ch:unige:46568","is_oa":true,"landing_page_url":"https://archive-ouverte.unige.ch/unige:46568","pdf_url":"https://archive-ouverte.unige.ch/unige:46568","source":{"id":"https://openalex.org/S4306402259","display_name":"Archive ouverte UNIGE (University of Geneva)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114457229","host_organization_name":"University of Geneva","host_organization_lineage":["https://openalex.org/I114457229"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/doctoralThesis"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.6700000166893005,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W22154053.pdf","grobid_xml":"https://content.openalex.org/works/W22154053.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W3209822695","https://openalex.org/W3033066689","https://openalex.org/W2303988273","https://openalex.org/W3084142877","https://openalex.org/W3042493277","https://openalex.org/W2294904890","https://openalex.org/W1849370305","https://openalex.org/W2114580249","https://openalex.org/W587739235","https://openalex.org/W7581989","https://openalex.org/W2516254529","https://openalex.org/W1884794018","https://openalex.org/W2957655559","https://openalex.org/W2583075718","https://openalex.org/W2770712924","https://openalex.org/W2613979842","https://openalex.org/W2408617758","https://openalex.org/W3128940808","https://openalex.org/W2778383542","https://openalex.org/W2086782715"],"abstract_inverted_index":{"Despite":[0],"the":[1,6,16,26,33,37,45,55,60,72,75,85,90,99,116,119,132,137,140,151],"progress":[2],"in":[3,15,59,84,107,113],"bioNLP":[4],"domain,":[5],"majority":[7],"of":[8,28,32,41,47,62,74,87,92,101,118,128,139],"text":[9],"mining":[10],"methods/techniques":[11],"are":[12,49,65,82,96],"not":[13],"used":[14,58,83],"real":[17],"curation":[18,48,95,109,120,141],"tasks.":[19],"Partly,":[20],"it":[21,146],"can":[22],"be":[23],"explained":[24],"by":[25],"lack":[27],"precision":[29],"and":[30,39,68,130],"opacity":[31],"provided":[34],"results.":[35],"Furthermore,":[36],"functionality":[38],"adequacy":[40],"systems,":[42],"designed":[43],"for":[44],"sake":[46],"also":[50,148],"important.":[51],"In":[52],"this":[53],"thesis,":[54],"original":[56],"methods":[57],"context":[61],"biocuration":[63],"assistance":[64],"first":[66],"explored":[67],"developed.":[69],"More":[70],"specifically,":[71],"focus":[73],"thesis":[76],"is":[77,111,122,143,147],"on":[78,124,150],"how":[79],"text-mining":[80],"systems":[81],"processes":[86],"curation.":[88,103],"Finally,":[89],"results":[91,134],"an":[93],"assisted":[94,108],"compared":[97],"to":[98],"ones":[100],"manual":[102],"The":[104],"achieved":[105,133],"improvement":[106,138],"accuracy":[110],"+9.3%":[112],"average.":[114],"Although":[115],"evaluation":[117],"tasks":[121],"based":[123],"a":[125],"small":[126],"sample":[127],"participants":[129],"benchmark,":[131],"suggest":[135],"that":[136],"quality":[142],"possible.":[144],"Moreover,":[145],"dependent":[149],"expert":[152],"skills.":[153]},"counts_by_year":[],"updated_date":"2026-07-01T06:00:48.157686","created_date":"2025-10-10T00:00:00"}
