{"id":"https://openalex.org/W2127061598","doi":"https://doi.org/10.1287/ijoc.1040.0087","title":"Palindromes in SARS and Other Coronaviruses","display_name":"Palindromes in SARS and Other Coronaviruses","publication_year":2004,"publication_date":"2004-10-21","ids":{"openalex":"https://openalex.org/W2127061598","doi":"https://doi.org/10.1287/ijoc.1040.0087","mag":"2127061598","pmid":"https://pubmed.ncbi.nlm.nih.gov/24966663"},"language":"en","primary_location":{"id":"doi:10.1287/ijoc.1040.0087","is_oa":false,"landing_page_url":"https://doi.org/10.1287/ijoc.1040.0087","pdf_url":null,"source":{"id":"https://openalex.org/S165318533","display_name":"INFORMS journal on computing","issn_l":"1091-9856","issn":["1091-9856","1526-5528"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315699","host_organization_name":"Institute for Operations Research and the Management Sciences","host_organization_lineage":["https://openalex.org/P4310315699"],"host_organization_lineage_names":["Institute for Operations Research and the Management Sciences"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"INFORMS Journal on Computing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036089466","display_name":"David S. H. Chew","orcid":null},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"David S. H. Chew","raw_affiliation_strings":["Department of Mathematics, National University of Singapore, Singapore 117543, Singapore","Department of Mathematics, National University of Singapore, Singapore, 117543, Singapore#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, National University of Singapore, Singapore 117543, Singapore","institution_ids":["https://openalex.org/I165932596"]},{"raw_affiliation_string":"Department of Mathematics, National University of Singapore, Singapore, 117543, Singapore#TAB#","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102728558","display_name":"Kwok Pui Choi","orcid":"https://orcid.org/0000-0003-2373-1773"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Kwok Pui Choi","raw_affiliation_strings":["Departments of Mathematics, and of Statistics and Applied Probability, National University of Singapore, Singapore 117543, Singapore"],"affiliations":[{"raw_affiliation_string":"Departments of Mathematics, and of Statistics and Applied Probability, National University of Singapore, Singapore 117543, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021852342","display_name":"Hans W. Heidner","orcid":null},"institutions":[{"id":"https://openalex.org/I45438204","display_name":"The University of Texas at San Antonio","ror":"https://ror.org/01kd65564","country_code":"US","type":"education","lineage":["https://openalex.org/I45438204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hans Heidner","raw_affiliation_strings":["Department of Biology, University of Texas at San Antonio, San Antonio, Texas 78249, USA","Department of Biology, University of Texas at San Antonio, San Antonio, Texas 78249, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Texas at San Antonio, San Antonio, Texas 78249, USA","institution_ids":["https://openalex.org/I45438204"]},{"raw_affiliation_string":"Department of Biology, University of Texas at San Antonio, San Antonio, Texas 78249, USA#TAB#","institution_ids":["https://openalex.org/I45438204"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040135909","display_name":"Ming\u2010Ying Leung","orcid":"https://orcid.org/0000-0003-2035-1214"},"institutions":[{"id":"https://openalex.org/I164936912","display_name":"The University of Texas at El Paso","ror":"https://ror.org/04d5vba33","country_code":"US","type":"education","lineage":["https://openalex.org/I164936912"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ming-Ying Leung","raw_affiliation_strings":["Department of Mathematical Sciences, University of Texas at El Paso, El Paso, Texas 79968, USA"],"affiliations":[{"raw_affiliation_string":"Department of Mathematical Sciences, University of Texas at El Paso, El Paso, Texas 79968, USA","institution_ids":["https://openalex.org/I164936912"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5036089466"],"corresponding_institution_ids":["https://openalex.org/I165932596"],"apc_list":null,"apc_paid":null,"fwci":0.3088,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.64138893,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"16","issue":"4","first_page":"331","last_page":"340"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/palindrome","display_name":"Palindrome","score":0.939389169216156},{"id":"https://openalex.org/keywords/coronavirus","display_name":"Coronavirus","score":0.6631889343261719},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6557662487030029},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5702612400054932},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.5176156759262085},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5014941692352295},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.4528825581073761},{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus-2","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score":0.44224998354911804},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4416984021663666},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4306233525276184},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.3392801284790039},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2125193178653717}],"concepts":[{"id":"https://openalex.org/C44667518","wikidata":"https://www.wikidata.org/wiki/Q12321","display_name":"Palindrome","level":4,"score":0.939389169216156},{"id":"https://openalex.org/C2777648638","wikidata":"https://www.wikidata.org/wiki/Q57751738","display_name":"Coronavirus","level":5,"score":0.6631889343261719},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6557662487030029},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5702612400054932},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.5176156759262085},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5014941692352295},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.4528825581073761},{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.44224998354911804},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4416984021663666},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4306233525276184},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.3392801284790039},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2125193178653717},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1287/ijoc.1040.0087","is_oa":false,"landing_page_url":"https://doi.org/10.1287/ijoc.1040.0087","pdf_url":null,"source":{"id":"https://openalex.org/S165318533","display_name":"INFORMS journal on computing","issn_l":"1091-9856","issn":["1091-9856","1526-5528"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315699","host_organization_name":"Institute for Operations Research and the Management Sciences","host_organization_lineage":["https://openalex.org/P4310315699"],"host_organization_lineage_names":["Institute for Operations Research and the Management Sciences"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"INFORMS Journal on Computing","raw_type":"journal-article"},{"id":"pmid:24966663","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24966663","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"INFORMS journal on computing","raw_type":null},{"id":"pmh:oai:scholarbank.nus.edu.sg:10635/103913","is_oa":false,"landing_page_url":"http://scholarbank.nus.edu.sg/handle/10635/103913","pdf_url":null,"source":{"id":"https://openalex.org/S7407052290","display_name":"National University of Singapore","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scopus","raw_type":"Article"},{"id":"pmh:oai:RePEc:inm:orijoc:v:16:y:2004:i:4:p:331-340","is_oa":false,"landing_page_url":"http://doi.org/10.1287/ijoc.1040.0087","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.800000011920929,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W1600463518","https://openalex.org/W1967669339","https://openalex.org/W1996423252","https://openalex.org/W2005674957","https://openalex.org/W2019797186","https://openalex.org/W2038399775","https://openalex.org/W2045894772","https://openalex.org/W2050322157","https://openalex.org/W2060418270","https://openalex.org/W2079093304","https://openalex.org/W2116586125","https://openalex.org/W2130851381","https://openalex.org/W2136511801","https://openalex.org/W2139752794","https://openalex.org/W2145872581","https://openalex.org/W2147839609","https://openalex.org/W2169076178","https://openalex.org/W2169198329","https://openalex.org/W2182143911","https://openalex.org/W2187647649","https://openalex.org/W2353831816","https://openalex.org/W4229955639","https://openalex.org/W4232271436"],"related_works":["https://openalex.org/W3084498529","https://openalex.org/W3156800464","https://openalex.org/W3013048436","https://openalex.org/W3023213585","https://openalex.org/W3087747856","https://openalex.org/W3087427886","https://openalex.org/W3152387439","https://openalex.org/W3119779361","https://openalex.org/W3134376730","https://openalex.org/W3188683005"],"abstract_inverted_index":{"With":[0],"the":[1,9,31,37,44,50,56,66,69,75,126,141,150],"identification":[2],"of":[3,17,36,47,77,118,183],"a":[4,62,82,100,156],"novel":[5],"coronavirus":[6],"associated":[7],"with":[8,54],"<i>severe":[10],"acute":[11],"respiratory":[12],"syndrome</i>":[13],"(SARS),":[14],"computational":[15],"analysis":[16],"its":[18],"RNA":[19],"genome":[20,52,67],"sequence":[21],"is":[22,155],"expected":[23],"to":[24,28,95,149],"give":[25],"useful":[26],"clues":[27],"help":[29],"elucidate":[30],"origin,":[32],"evolution,":[33],"and":[34,71,107,110,174],"pathogenicity":[35],"virus.":[38],"In":[39,132],"this":[40],"paper,":[41],"we":[42,113],"study":[43],"collective":[45],"counts":[46],"palindromes":[48,78,117,135,169],"in":[49,124,128,140],"SARS":[51,142,151],"along":[53],"all":[55,125],"completely":[57],"sequenced":[58],"coronaviruses.":[59],"Based":[60],"on":[61],"Markov-chain":[63],"model":[64],"for":[65,74],"sequence,":[68],"mean":[70],"standard":[72,111],"deviation":[73],"number":[76],"at":[79],"or":[80],"above":[81],"given":[83],"length":[84,119],"are":[85,90,121,136,147,165,187],"derived.":[86],"These":[87],"theoretical":[88],"results":[89],"complemented":[91],"by":[92],"extensive":[93],"simulations":[94],"provide":[96],"empirical":[97,108],"estimates.":[98],"Using":[99],"<i>z</i>":[101],"score":[102],"obtained":[103],"from":[104],"these":[105,184],"mathematical":[106],"means":[109],"deviations,":[112],"have":[114],"observed":[115],"that":[116],"four":[120],"significantly":[122,137],"underrepresented":[123,138],"coronaviruses":[127],"our":[129],"data":[130],"set.":[131],"contrast,":[133],"length-six":[134],"only":[139],"coronavirus.":[143],"Two":[144],"other":[145],"features":[146,186],"unique":[148],"sequence.":[152],"First,":[153],"there":[154,164],"length-22":[157],"palindrome":[158,185],"TCTTTAACAAGCTTGTTAAAGA":[159],"spanning":[160,171],"positions":[161,172],"25962-25983.":[162],"Second,":[163],"two":[166],"repeating":[167],"length-12":[168],"TTATAATTATAA":[170],"22712-22723":[173],"22796-22807.":[175],"Some":[176],"further":[177],"investigations":[178],"into":[179],"possible":[180],"biological":[181],"implications":[182],"proposed.":[188]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
