{"id":"https://openalex.org/W1954100204","doi":"https://doi.org/10.12688/f1000research.6924.1","title":"The khmer software package: enabling efficient nucleotide sequence analysis","display_name":"The khmer software package: enabling efficient nucleotide sequence analysis","publication_year":2015,"publication_date":"2015-09-25","ids":{"openalex":"https://openalex.org/W1954100204","doi":"https://doi.org/10.12688/f1000research.6924.1","mag":"1954100204"},"language":"en","primary_location":{"id":"doi:10.12688/f1000research.6924.1","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.6924.1","pdf_url":"https://f1000research.com/articles/4-900/v1/pdf","source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357"],"host_organization_lineage_names":["Faculty of 1000"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"journal-article"},"type":"preprint","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://f1000research.com/articles/4-900/v1/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020288899","display_name":"Michael R. Crusoe","orcid":"https://orcid.org/0000-0002-2961-9670"},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]},{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Michael R. Crusoe","raw_affiliation_strings":[". University of Chicago, Chicago, USA","Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, USA","Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI"],"affiliations":[{"raw_affiliation_string":". University of Chicago, Chicago, USA","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028805107","display_name":"Hussien F. Alameldin","orcid":"https://orcid.org/0000-0002-7446-3708"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]},{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hussien F. Alameldin","raw_affiliation_strings":[". Stony Brook University, Stony Brook, USA","Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI, USA","Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI"],"affiliations":[{"raw_affiliation_string":". Stony Brook University, Stony Brook, USA","institution_ids":["https://openalex.org/I59553526"]},{"raw_affiliation_string":"Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036405743","display_name":"Sherine Awad","orcid":null},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sherine Awad","raw_affiliation_strings":["Population Health and Reproduction, University of California, Davis, Davis, CA, USA","Population Health and Reproduction, University of California, Davis, Davis, CA"],"affiliations":[{"raw_affiliation_string":"Population Health and Reproduction, University of California, Davis, Davis, CA, USA","institution_ids":["https://openalex.org/I84218800"]},{"raw_affiliation_string":"Population Health and Reproduction, University of California, Davis, Davis, CA","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111512707","display_name":"Elmar Boucher","orcid":null},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Elmar Boucher","raw_affiliation_strings":["Department of Biomedical Engineering, Oregon Health and Science University, Portland, OR, USA","Department of Biomedical Engineering, Oregon Health and Science University, Portland, OR"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Oregon Health and Science University, Portland, OR, USA","institution_ids":["https://openalex.org/I165690674"]},{"raw_affiliation_string":"Department of Biomedical Engineering, Oregon Health and Science University, Portland, OR","institution_ids":["https://openalex.org/I165690674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034153539","display_name":"Adam Caldwell","orcid":null},"institutions":[{"id":"https://openalex.org/I51504820","display_name":"San Jose State University","ror":"https://ror.org/04qyvz380","country_code":"US","type":"education","lineage":["https://openalex.org/I51504820"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam Caldwell","raw_affiliation_strings":["Biology Department, San Jose State University, San Jose, CA, USA","Biology Department, San Jose State University, San Jose, CA"],"affiliations":[{"raw_affiliation_string":"Biology Department, San Jose State University, San Jose, CA, USA","institution_ids":["https://openalex.org/I51504820"]},{"raw_affiliation_string":"Biology Department, San Jose State University, San Jose, CA","institution_ids":["https://openalex.org/I51504820"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059788020","display_name":"Reed A. Cartwright","orcid":"https://orcid.org/0000-0002-0837-9380"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Reed Cartwright","raw_affiliation_strings":["School of Life Sciences and The Biodesign Institute, Arizona State University, Tempe, AZ, USA","School of Life Sciences and The Biodesign Institute, Arizona State University, Tempe, AZ"],"affiliations":[{"raw_affiliation_string":"School of Life Sciences and The Biodesign Institute, Arizona State University, Tempe, AZ, USA","institution_ids":["https://openalex.org/I55732556"]},{"raw_affiliation_string":"School of Life Sciences and The Biodesign Institute, Arizona State University, Tempe, AZ","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049985774","display_name":"Amanda Charbonneau","orcid":"https://orcid.org/0000-0001-7376-7702"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Amanda Charbonneau","raw_affiliation_strings":["Genetics, Michigan State University, East Lansing, MI, USA","Genetics, Michigan State University, East Lansing, MI"],"affiliations":[{"raw_affiliation_string":"Genetics, Michigan State University, East Lansing, MI, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Genetics, Michigan State University, East Lansing, MI","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088001432","display_name":"Bede Constantinides","orcid":"https://orcid.org/0000-0002-3480-3819"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Bede Constantinides","raw_affiliation_strings":["Computational and Evolutionary Biology, Faculty of Life Sciences, University of Manchester, Manchester, UK","Computational and Evolutionary Biology, Faculty of Life Sciences, University of Manchester, Manchester"],"affiliations":[{"raw_affiliation_string":"Computational and Evolutionary Biology, Faculty of Life Sciences, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Computational and Evolutionary Biology, Faculty of Life Sciences, University of Manchester, Manchester","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058495277","display_name":"Greg Edvenson","orcid":null},"institutions":[{"id":"https://openalex.org/I11912373","display_name":"Micron (United States)","ror":"https://ror.org/02fv52296","country_code":"US","type":"company","lineage":["https://openalex.org/I11912373"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Greg Edvenson","raw_affiliation_strings":["Micron Technology, Seattle, WA, USA","Micron Technology, Seattle, WA"],"affiliations":[{"raw_affiliation_string":"Micron Technology, Seattle, WA, USA","institution_ids":["https://openalex.org/I11912373"]},{"raw_affiliation_string":"Micron Technology, Seattle, WA","institution_ids":["https://openalex.org/I11912373"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007329630","display_name":"Scott Fay","orcid":"https://orcid.org/0000-0002-6694-9169"},"institutions":[{"id":"https://openalex.org/I4210160571","display_name":"Invitae (United States)","ror":"https://ror.org/05mt7ye26","country_code":"US","type":"company","lineage":["https://openalex.org/I4210160571"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Scott Fay","raw_affiliation_strings":["Invitae, San Francisco, CA, USA","Invitae, San Francisco, CA"],"affiliations":[{"raw_affiliation_string":"Invitae, San Francisco, CA, USA","institution_ids":["https://openalex.org/I4210160571"]},{"raw_affiliation_string":"Invitae, San Francisco, CA","institution_ids":["https://openalex.org/I4210160571"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014766073","display_name":"Jacob Fenton","orcid":null},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jacob Fenton","raw_affiliation_strings":["Computer Science and Engineering, Michigan State University, East Lansing, MI, USA","Computer Science and Engineering, Michigan State University, East Lansing, MI"],"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering, Michigan State University, East Lansing, MI, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Computer Science and Engineering, Michigan State University, East Lansing, MI","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057521235","display_name":"Thomas Fenzl","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Thomas Fenzl","raw_affiliation_strings":["Independent Researcher, Munich, Germany","Independent Researcher, Munich"],"affiliations":[{"raw_affiliation_string":"Independent Researcher, Munich, Germany","institution_ids":[]},{"raw_affiliation_string":"Independent Researcher, Munich","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027977819","display_name":"Jordan Fish","orcid":"https://orcid.org/0000-0001-8039-094X"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jordan Fish","raw_affiliation_strings":["Computer Science and Engineering, Michigan State University, East Lansing, MI, USA","Computer Science and Engineering, Michigan State University, East Lansing, MI"],"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering, Michigan State University, East Lansing, MI, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Computer Science and Engineering, Michigan State University, East Lansing, MI","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019370103","display_name":"Leonor Garc\u00eda-Gutierrez","orcid":null},"institutions":[{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Leonor Garcia-Gutierrez","raw_affiliation_strings":["Mathematics Institute, University of Warwick, Warwick, UK","Mathematics Institute, University of Warwick, Warwick"],"affiliations":[{"raw_affiliation_string":"Mathematics Institute, University of Warwick, Warwick, UK","institution_ids":["https://openalex.org/I39555362"]},{"raw_affiliation_string":"Mathematics Institute, University of Warwick, Warwick","institution_ids":["https://openalex.org/I39555362"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050912104","display_name":"Phillip Garland","orcid":null},"institutions":[{"id":"https://openalex.org/I1330732676","display_name":"Infectious Disease Research Institute","ror":"https://ror.org/03y4myd35","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1330732676"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Phillip Garland","raw_affiliation_strings":["Eastlake Data, Seattle, WA, USA","Eastlake Data, Seattle, WA"],"affiliations":[{"raw_affiliation_string":"Eastlake Data, Seattle, WA, USA","institution_ids":["https://openalex.org/I1330732676"]},{"raw_affiliation_string":"Eastlake Data, Seattle, WA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111893388","display_name":"Jonathan Gluck","orcid":null},"institutions":[{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jonathan Gluck","raw_affiliation_strings":["Graduate Program, University of Maryland, College Park, MD, USA","Graduate Program, University of Maryland, College Park, MD"],"affiliations":[{"raw_affiliation_string":"Graduate Program, University of Maryland, College Park, MD, USA","institution_ids":["https://openalex.org/I66946132"]},{"raw_affiliation_string":"Graduate Program, University of Maryland, College Park, MD","institution_ids":["https://openalex.org/I66946132"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020151802","display_name":"Iv\u00e1n Gonz\u00e1lez","orcid":"https://orcid.org/0000-0002-5886-240X"},"institutions":[{"id":"https://openalex.org/I4210087915","display_name":"Massachusetts General Hospital","ror":"https://ror.org/002pd6e78","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210087915","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I4210127055","display_name":"Athinoula A. Martinos Center for Biomedical Imaging","ror":"https://ror.org/032q5ym94","country_code":"US","type":"facility","lineage":["https://openalex.org/I136199984","https://openalex.org/I4210087915","https://openalex.org/I4210127055","https://openalex.org/I48633490","https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Iv\u00e1n Gonz\u00e1lez","raw_affiliation_strings":["Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA"],"affiliations":[{"raw_affiliation_string":"Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA","institution_ids":["https://openalex.org/I4210127055","https://openalex.org/I4210087915"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083408160","display_name":"Sarah Guermond","orcid":"https://orcid.org/0000-0002-5849-1522"},"institutions":[{"id":"https://openalex.org/I2802723755","display_name":"Independent Sector","ror":"https://ror.org/05vhwqa91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2802723755"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sarah Guermond","raw_affiliation_strings":["Independent Researcher, Seattle, WA, USA","Independent Researcher, Seattle, WA"],"affiliations":[{"raw_affiliation_string":"Independent Researcher, Seattle, WA, USA","institution_ids":[]},{"raw_affiliation_string":"Independent Researcher, Seattle, WA","institution_ids":["https://openalex.org/I2802723755"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021380321","display_name":"Jiarong Guo","orcid":"https://orcid.org/0000-0002-6903-5418"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jiarong Guo","raw_affiliation_strings":["Center for Microbial Ecology, Michigan State University, East Lansing, MI, USA","Center for Microbial Ecology, Michigan State University, East Lansing, MI"],"affiliations":[{"raw_affiliation_string":"Center for Microbial Ecology, Michigan State University, East Lansing, MI, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Center for Microbial Ecology, Michigan State University, East Lansing, MI","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101970169","display_name":"Aditi Gupta","orcid":"https://orcid.org/0000-0003-3647-8148"},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]},{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aditi Gupta","raw_affiliation_strings":[". University of Chicago, Chicago, USA","Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, USA","Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI"],"affiliations":[{"raw_affiliation_string":". University of Chicago, Chicago, USA","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029149330","display_name":"Joshua R. Herr","orcid":"https://orcid.org/0000-0003-3425-292X"},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]},{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joshua R. Herr","raw_affiliation_strings":[". University of Chicago, Chicago, USA","Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, USA","Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI"],"affiliations":[{"raw_affiliation_string":". University of Chicago, Chicago, USA","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083649171","display_name":"Adina Howe","orcid":"https://orcid.org/0000-0002-7705-343X"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adina Howe","raw_affiliation_strings":["Department of Agricultural and Biosystems Engineering, Iowa State University, Ames, IA, USA","Department of Agricultural and Biosystems Engineering, Iowa State University, Ames, IA"],"affiliations":[{"raw_affiliation_string":"Department of Agricultural and Biosystems Engineering, Iowa State University, Ames, IA, USA","institution_ids":["https://openalex.org/I173911158"]},{"raw_affiliation_string":"Department of Agricultural and Biosystems Engineering, Iowa State University, Ames, IA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039322682","display_name":"Alex Hyer","orcid":"https://orcid.org/0000-0003-1022-6196"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alex Hyer","raw_affiliation_strings":["Department of Biology, University of Utah, Salt Lake City, UT, USA","Department of Biology, University of Utah, Salt Lake City, UT"],"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Utah, Salt Lake City, UT, USA","institution_ids":["https://openalex.org/I223532165"]},{"raw_affiliation_string":"Department of Biology, University of Utah, Salt Lake City, UT","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055231074","display_name":"Andreas H\u00e4rpfer","orcid":"https://orcid.org/0000-0002-5551-9286"},"institutions":[{"id":"https://openalex.org/I4210087817","display_name":"Software (Germany)","ror":"https://ror.org/004g36n56","country_code":"DE","type":"company","lineage":["https://openalex.org/I4210087817"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andreas H\u00e4rpfer","raw_affiliation_strings":["ConSol* Software GmbH, Munchen"],"affiliations":[{"raw_affiliation_string":"ConSol* Software GmbH, Munchen","institution_ids":["https://openalex.org/I4210087817"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068533814","display_name":"Luiz Irber","orcid":"https://orcid.org/0000-0003-4371-9659"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Luiz Irber","raw_affiliation_strings":["Computer Science and Engineering, Michigan State University, East Lansing, MI, USA","Computer Science and Engineering, Michigan State University, East Lansing, MI"],"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering, Michigan State University, East Lansing, MI, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Computer Science and Engineering, Michigan State University, East Lansing, MI","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088041599","display_name":"Rhys Kidd","orcid":null},"institutions":[{"id":"https://openalex.org/I2800535057","display_name":"IP Australia","ror":"https://ror.org/014vqg108","country_code":"AU","type":"government","lineage":["https://openalex.org/I2800535057","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Rhys Kidd","raw_affiliation_strings":["Independent Researcher, Sydney, Australia 23 Verdematics, Fremont, CA, USA","Independent Researcher, Sydney"],"affiliations":[{"raw_affiliation_string":"Independent Researcher, Sydney, Australia 23 Verdematics, Fremont, CA, USA","institution_ids":["https://openalex.org/I2800535057"]},{"raw_affiliation_string":"Independent Researcher, Sydney","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059110935","display_name":"David Lin","orcid":"https://orcid.org/0000-0002-9236-8405"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"David Lin","raw_affiliation_strings":["Verdematics, Fremont, CA"],"affiliations":[{"raw_affiliation_string":"Verdematics, Fremont, CA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011944371","display_name":"Justin Lippi","orcid":null},"institutions":[{"id":"https://openalex.org/I4210121988","display_name":"Film Independent","ror":"https://ror.org/036cy3843","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210121988"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Justin Lippi","raw_affiliation_strings":["Independent Researcher, San Francisco, CA"],"affiliations":[{"raw_affiliation_string":"Independent Researcher, San Francisco, CA","institution_ids":["https://openalex.org/I4210121988"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020799928","display_name":"Tamer Mansour","orcid":"https://orcid.org/0000-0002-4747-4241"},"institutions":[{"id":"https://openalex.org/I159247623","display_name":"Mansoura University","ror":"https://ror.org/01k8vtd75","country_code":"EG","type":"education","lineage":["https://openalex.org/I159247623"]},{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["EG","US"],"is_corresponding":false,"raw_author_name":"Tamer Mansour","raw_affiliation_strings":["Clinical Pathology, Mansoura University, Mansoura","Population Health and Reproduction, University of California, Davis, Davis, CA"],"affiliations":[{"raw_affiliation_string":"Clinical Pathology, Mansoura University, Mansoura","institution_ids":["https://openalex.org/I159247623"]},{"raw_affiliation_string":"Population Health and Reproduction, University of California, Davis, Davis, CA","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047179678","display_name":"Pamela McA'Nulty","orcid":null},"institutions":[{"id":"https://openalex.org/I4210108476","display_name":"Addgene","ror":"https://ror.org/01nn1pw54","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210108476"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pamela McA'Nulty","raw_affiliation_strings":["Addgene, Cambridge, MA, USA","Addgene, Cambridge, MA"],"affiliations":[{"raw_affiliation_string":"Addgene, Cambridge, MA, USA","institution_ids":["https://openalex.org/I4210108476"]},{"raw_affiliation_string":"Addgene, Cambridge, MA","institution_ids":["https://openalex.org/I4210108476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043244566","display_name":"Eric McDonald","orcid":null},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric McDonald","raw_affiliation_strings":["Computer Science and Engineering, Michigan State University, East Lansing, MI, USA","Computer Science and Engineering, Michigan State University, East Lansing, MI"],"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering, Michigan State University, East Lansing, MI, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Computer Science and Engineering, Michigan State University, East Lansing, MI","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110812902","display_name":"Jessica E. Mizzi","orcid":null},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jessica Mizzi","raw_affiliation_strings":["Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, USA","Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI"],"affiliations":[{"raw_affiliation_string":"Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078210447","display_name":"Kevin Murray","orcid":"https://orcid.org/0000-0002-2466-1917"},"institutions":[{"id":"https://openalex.org/I118347636","display_name":"Australian National University","ror":"https://ror.org/019wvm592","country_code":"AU","type":"education","lineage":["https://openalex.org/I118347636"]},{"id":"https://openalex.org/I4210102918","display_name":"ARC Centre of Excellence in Plant Energy Biology","ror":"https://ror.org/01a1mq059","country_code":"AU","type":"facility","lineage":["https://openalex.org/I118347636","https://openalex.org/I1337719021","https://openalex.org/I2801453606","https://openalex.org/I4210102918","https://openalex.org/I4210132349"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Kevin D. Murray","raw_affiliation_strings":["ARC Centre of Excellence in Plant Energy Biology, The Australian National University, Canberra, ACT, Australia","ARC Centre of Excellence in Plant Energy Biology, The Australian National University, Canberra, ACT"],"affiliations":[{"raw_affiliation_string":"ARC Centre of Excellence in Plant Energy Biology, The Australian National University, Canberra, ACT, Australia","institution_ids":["https://openalex.org/I4210102918","https://openalex.org/I118347636"]},{"raw_affiliation_string":"ARC Centre of Excellence in Plant Energy Biology, The Australian National University, Canberra, ACT","institution_ids":["https://openalex.org/I4210102918","https://openalex.org/I118347636"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113167510","display_name":"Joshua Nahum","orcid":null},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joshua R. Nahum","raw_affiliation_strings":["BEACON Center, Michigan State University, East Lansing, MI, USA","BEACON Center, Michigan State University, East Lansing, MI"],"affiliations":[{"raw_affiliation_string":"BEACON Center, Michigan State University, East Lansing, MI, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"BEACON Center, Michigan State University, East Lansing, MI","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081189835","display_name":"Kaben Nanlohy","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kaben Nanlohy","raw_affiliation_strings":["Independent Researcher, New Orleans, LA, USA","Independent Researcher, New Orleans, LA"],"affiliations":[{"raw_affiliation_string":"Independent Researcher, New Orleans, LA, USA","institution_ids":[]},{"raw_affiliation_string":"Independent Researcher, New Orleans, LA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065448492","display_name":"Alexander J. Nederbragt","orcid":"https://orcid.org/0000-0001-5539-0999"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Alexander Johan Nederbragt","raw_affiliation_strings":["Centre for Ecological and Evolutionary Synthesis, Dept. of Biosciences, University of Oslo, Oslo, Norway","Centre for Ecological and Evolutionary Synthesis, Dept. of Biosciences, University of Oslo, Oslo"],"affiliations":[{"raw_affiliation_string":"Centre for Ecological and Evolutionary Synthesis, Dept. of Biosciences, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Centre for Ecological and Evolutionary Synthesis, Dept. of Biosciences, University of Oslo, Oslo","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066897615","display_name":"Humberto Ortiz\u2010Zuazaga","orcid":"https://orcid.org/0000-0002-4667-8357"},"institutions":[{"id":"https://openalex.org/I1662191","display_name":"University of Puerto Rico at R\u00edo Piedras","ror":"https://ror.org/0453v4r20","country_code":"PR","type":"education","lineage":["https://openalex.org/I1662191","https://openalex.org/I200399037"]}],"countries":["PR"],"is_corresponding":false,"raw_author_name":"Humberto Ortiz-Zuazaga","raw_affiliation_strings":["Department of Computer Science, Rio Piedras Campus, University of Puerto Rico, San Juan, Puerto Rico","Department of Computer Science, Rio Piedras Campus, University of Puerto Rico, San Juan"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Rio Piedras Campus, University of Puerto Rico, San Juan, Puerto Rico","institution_ids":["https://openalex.org/I1662191"]},{"raw_affiliation_string":"Department of Computer Science, Rio Piedras Campus, University of Puerto Rico, San Juan","institution_ids":["https://openalex.org/I1662191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038216980","display_name":"Jeramia Ory","orcid":"https://orcid.org/0000-0002-5867-007X"},"institutions":[{"id":"https://openalex.org/I182380053","display_name":"University of Health Sciences and Pharmacy","ror":"https://ror.org/01btzz102","country_code":"US","type":"education","lineage":["https://openalex.org/I182380053"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeramia Ory","raw_affiliation_strings":["Biochemistry, St. Louis College of Pharmacy, St. Louis, MO, USA","Biochemistry, St. Louis College of Pharmacy, St. Louis, MO"],"affiliations":[{"raw_affiliation_string":"Biochemistry, St. Louis College of Pharmacy, St. Louis, MO, USA","institution_ids":["https://openalex.org/I182380053"]},{"raw_affiliation_string":"Biochemistry, St. Louis College of Pharmacy, St. Louis, MO","institution_ids":["https://openalex.org/I182380053"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007762818","display_name":"Jason Pell","orcid":"https://orcid.org/0000-0003-1869-084X"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jason Pell","raw_affiliation_strings":["Computer Science and Engineering, Michigan State University, East Lansing, MI, USA","Computer Science and Engineering, Michigan State University, East Lansing, MI"],"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering, Michigan State University, East Lansing, MI, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Computer Science and Engineering, Michigan State University, East Lansing, MI","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075475261","display_name":"Charles Pepe\u2010Ranney","orcid":"https://orcid.org/0000-0002-1791-869X"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Charles Pepe-Ranney","raw_affiliation_strings":["Crop and Soil Sciences, Cornell University, Ithaca, NY, USA","Crop and Soil Sciences, Cornell University, Ithaca, NY"],"affiliations":[{"raw_affiliation_string":"Crop and Soil Sciences, Cornell University, Ithaca, NY, USA","institution_ids":["https://openalex.org/I205783295"]},{"raw_affiliation_string":"Crop and Soil Sciences, Cornell University, Ithaca, NY","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064693231","display_name":"Zachary N. Russ","orcid":"https://orcid.org/0000-0002-0571-8252"},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zachary N. Russ","raw_affiliation_strings":["Department of Bioengineering, UC Berkeley, Berkeley, CA, USA","Department of Bioengineering, UC Berkeley, Berkeley, CA"],"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, UC Berkeley, Berkeley, CA, USA","institution_ids":["https://openalex.org/I95457486"]},{"raw_affiliation_string":"Department of Bioengineering, UC Berkeley, Berkeley, CA","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026641587","display_name":"Erich M. Schwarz","orcid":"https://orcid.org/0000-0003-3151-4381"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Erich Schwarz","raw_affiliation_strings":["Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY, USA","Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY, USA","institution_ids":["https://openalex.org/I205783295"]},{"raw_affiliation_string":"Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039305636","display_name":"Camille Scott","orcid":"https://orcid.org/0000-0001-8822-8779"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Camille Scott","raw_affiliation_strings":["Computer Science and Engineering, Michigan State University, East Lansing, MI, USA","Computer Science and Engineering, Michigan State University, East Lansing, MI"],"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering, Michigan State University, East Lansing, MI, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Computer Science and Engineering, Michigan State University, East Lansing, MI","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070648020","display_name":"Josiah Seaman","orcid":"https://orcid.org/0000-0003-2374-630X"},"institutions":[{"id":"https://openalex.org/I4210133860","display_name":"Windsor Dermatology","ror":"https://ror.org/03m5z5h02","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210133860"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Josiah Seaman","raw_affiliation_strings":["Data Visualization, Newline Technical Innovations, Windsor, CO, USA","Data Visualization, Newline Technical Innovations, Windsor, CO"],"affiliations":[{"raw_affiliation_string":"Data Visualization, Newline Technical Innovations, Windsor, CO, USA","institution_ids":["https://openalex.org/I4210133860"]},{"raw_affiliation_string":"Data Visualization, Newline Technical Innovations, Windsor, CO","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057482475","display_name":"Scott Sievert","orcid":"https://orcid.org/0000-0002-4275-3452"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Scott Sievert","raw_affiliation_strings":["Electrical and Computer Engineering, University of Minnesota, Minneapolis, MN, USA","Electrical and Computer Engineering, University of Minnesota, Minneapolis, MN"],"affiliations":[{"raw_affiliation_string":"Electrical and Computer Engineering, University of Minnesota, Minneapolis, MN, USA","institution_ids":["https://openalex.org/I130238516"]},{"raw_affiliation_string":"Electrical and Computer Engineering, University of Minnesota, Minneapolis, MN","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003935660","display_name":"Jared T. Simpson","orcid":"https://orcid.org/0000-0002-2116-2602"},"institutions":[{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Jared Simpson","raw_affiliation_strings":["Computer Science, University of Toronto, Toronto, ON, Canada","Ontario Institute for Cancer Research, Toronto, ON, Canada","Ontario Institute for Cancer Research, Toronto, ON","Computer Science, University of Toronto, Toronto, ON"],"affiliations":[{"raw_affiliation_string":"Computer Science, University of Toronto, Toronto, ON, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Ontario Institute for Cancer Research, Toronto, ON, Canada","institution_ids":["https://openalex.org/I112260969"]},{"raw_affiliation_string":"Ontario Institute for Cancer Research, Toronto, ON","institution_ids":["https://openalex.org/I112260969"]},{"raw_affiliation_string":"Computer Science, University of Toronto, Toronto, ON","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078785577","display_name":"Connor T. Skennerton","orcid":"https://orcid.org/0000-0003-1320-4873"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Connor T. Skennerton","raw_affiliation_strings":["Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, USA","Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA"],"affiliations":[{"raw_affiliation_string":"Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, USA","institution_ids":["https://openalex.org/I122411786"]},{"raw_affiliation_string":"Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005872067","display_name":"James S. Spencer","orcid":"https://orcid.org/0000-0002-8339-429X"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"James Spencer","raw_affiliation_strings":["Dept of Physics and Dept of Materials, Imperial College London, London, UK","Dept of Physics and Dept of Materials, Imperial College London, London"],"affiliations":[{"raw_affiliation_string":"Dept of Physics and Dept of Materials, Imperial College London, London, UK","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Dept of Physics and Dept of Materials, Imperial College London, London","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101840472","display_name":"S. Ramakrishnan","orcid":"https://orcid.org/0000-0001-5506-1570"},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ramakrishnan Srinivasan","raw_affiliation_strings":["Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA","Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY"],"affiliations":[{"raw_affiliation_string":"Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA","institution_ids":["https://openalex.org/I98704320"]},{"raw_affiliation_string":"Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY","institution_ids":["https://openalex.org/I98704320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048840870","display_name":"Daniel Standage","orcid":null},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]},{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel Standage","raw_affiliation_strings":["Bioinformatics and Computational Biology Graduate Program, Iowa State University, Ames, IA, USA","Department of Biology, Indiana University, Bloomington, IN, USA","Department of Biology, Indiana University, Bloomington, IN","Bioinformatics and Computational Biology Graduate Program, Iowa State University, Ames, IA"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Computational Biology Graduate Program, Iowa State University, Ames, IA, USA","institution_ids":["https://openalex.org/I173911158"]},{"raw_affiliation_string":"Department of Biology, Indiana University, Bloomington, IN, USA","institution_ids":["https://openalex.org/I4210119109"]},{"raw_affiliation_string":"Department of Biology, Indiana University, Bloomington, IN","institution_ids":["https://openalex.org/I4210119109"]},{"raw_affiliation_string":"Bioinformatics and Computational Biology Graduate Program, Iowa State University, Ames, IA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055757605","display_name":"James A. Stapleton","orcid":"https://orcid.org/0000-0003-1133-4180"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James A. Stapleton","raw_affiliation_strings":["Chemical Engineering & Materials Science, Michigan State University, East Lansing, MIS, USA","Chemical Engineering & Materials Science, Michigan State University, East Lansing, MIS"],"affiliations":[{"raw_affiliation_string":"Chemical Engineering & Materials Science, Michigan State University, East Lansing, MIS, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Chemical Engineering & Materials Science, Michigan State University, East Lansing, MIS","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026865109","display_name":"Susan R. Steinman","orcid":null},"institutions":[{"id":"https://openalex.org/I2799431996","display_name":"New York Eye and Ear Infirmary","ror":"https://ror.org/00tcb9k97","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799431996"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Susan R. Steinman","raw_affiliation_strings":["The New York Eye and Ear Infirmary of Mount Sinai, New York, NY, USA","The New York Eye and Ear Infirmary of Mount Sinai, New York, NY"],"affiliations":[{"raw_affiliation_string":"The New York Eye and Ear Infirmary of Mount Sinai, New York, NY, USA","institution_ids":["https://openalex.org/I2799431996"]},{"raw_affiliation_string":"The New York Eye and Ear Infirmary of Mount Sinai, New York, NY","institution_ids":["https://openalex.org/I2799431996"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014012887","display_name":"J.J. Stein","orcid":null},"institutions":[{"id":"https://openalex.org/I196272386","display_name":"Providence College","ror":"https://ror.org/00rxpqe74","country_code":"US","type":"education","lineage":["https://openalex.org/I196272386"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joe Stein","raw_affiliation_strings":["Independent Researcher, Providence, RI, USA","Independent Researcher, Providence, RI"],"affiliations":[{"raw_affiliation_string":"Independent Researcher, Providence, RI, USA","institution_ids":["https://openalex.org/I196272386"]},{"raw_affiliation_string":"Independent Researcher, Providence, RI","institution_ids":["https://openalex.org/I196272386"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108317529","display_name":"Benjamin Taylor","orcid":null},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benjamin Taylor","raw_affiliation_strings":["Computer Science and Engineering, Michigan State University, East Lansing, MI, USA","Computer Science and Engineering, Michigan State University, East Lansing, MI"],"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering, Michigan State University, East Lansing, MI, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Computer Science and Engineering, Michigan State University, East Lansing, MI","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109913844","display_name":"Will Trimble","orcid":null},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Will Trimble","raw_affiliation_strings":["Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, IL, USA","Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, IL"],"affiliations":[{"raw_affiliation_string":"Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, IL, USA","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":"Mathematics and Computer Science Division, Argonne National Laboratory, Lemont, IL","institution_ids":["https://openalex.org/I1282105669"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087401081","display_name":"Heather L. Wiencko","orcid":"https://orcid.org/0000-0002-9751-773X"},"institutions":[{"id":"https://openalex.org/I205274468","display_name":"Trinity College Dublin","ror":"https://ror.org/02tyrky19","country_code":"IE","type":"education","lineage":["https://openalex.org/I205274468"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Heather L. Wiencko","raw_affiliation_strings":["Department of Genetics, Smurfit Institute, Trinity College Dublin, Dublin, Ireland","Department of Genetics, Smurfit Institute, Trinity College Dublin, Dublin"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Smurfit Institute, Trinity College Dublin, Dublin, Ireland","institution_ids":["https://openalex.org/I205274468"]},{"raw_affiliation_string":"Department of Genetics, Smurfit Institute, Trinity College Dublin, Dublin","institution_ids":["https://openalex.org/I205274468"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025341502","display_name":"Michael Wright","orcid":"https://orcid.org/0000-0002-9519-7496"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Wright","raw_affiliation_strings":["Computer Science and Engineering, Michigan State University, East Lansing, MI, USA","Computer Science and Engineering, Michigan State University, East Lansing, MI"],"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering, Michigan State University, East Lansing, MI, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Computer Science and Engineering, Michigan State University, East Lansing, MI","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056407391","display_name":"Brian Wyss","orcid":null},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian Wyss","raw_affiliation_strings":["Computer Science and Engineering, Michigan State University, East Lansing, MI, USA","Computer Science and Engineering, Michigan State University, East Lansing, MI"],"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering, Michigan State University, East Lansing, MI, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Computer Science and Engineering, Michigan State University, East Lansing, MI","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052391290","display_name":"Qingpeng Zhang","orcid":"https://orcid.org/0000-0002-6819-0686"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qingpeng Zhang","raw_affiliation_strings":["Computer Science and Engineering, Michigan State University, East Lansing, MI, USA","Independent Researcher, Boston, MA, USA","Computer Science and Engineering, Michigan State University, East Lansing, MI"],"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering, Michigan State University, East Lansing, MI, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Independent Researcher, Boston, MA, USA","institution_ids":[]},{"raw_affiliation_string":"Computer Science and Engineering, Michigan State University, East Lansing, MI","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032018848","display_name":"en zyme","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"en zyme","raw_affiliation_strings":["Independent Researcher, Boston, MA"],"affiliations":[{"raw_affiliation_string":"Independent Researcher, Boston, MA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036229691","display_name":"C. Titus Brown","orcid":"https://orcid.org/0000-0001-6001-2677"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]},{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C. Titus Brown","raw_affiliation_strings":["Computer Science and Engineering, Michigan State University, East Lansing, MI","Population Health and Reproduction, University of California, Davis, Davis, CA","Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI"],"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering, Michigan State University, East Lansing, MI","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Population Health and Reproduction, University of California, Davis, Davis, CA","institution_ids":["https://openalex.org/I84218800"]},{"raw_affiliation_string":"Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI","institution_ids":["https://openalex.org/I87216513"]}]}],"institutions":[],"countries_distinct_count":9,"institutions_distinct_count":61,"corresponding_author_ids":["https://openalex.org/A5020288899"],"corresponding_institution_ids":["https://openalex.org/I40347166","https://openalex.org/I87216513"],"apc_list":{"value":1350,"currency":"USD","value_usd":1350},"apc_paid":{"value":1350,"currency":"USD","value_usd":1350},"fwci":20.6067,"has_fulltext":true,"cited_by_count":417,"citation_normalized_percentile":{"value":0.99632929,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"4","issue":null,"first_page":"900","last_page":"900"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/de-bruijn-sequence","display_name":"De Bruijn sequence","score":0.6219349503517151},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.6030176281929016},{"id":"https://openalex.org/keywords/de-bruijn-graph","display_name":"De Bruijn graph","score":0.5494092702865601},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5266561508178711},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5077837109565735},{"id":"https://openalex.org/keywords/software-package","display_name":"Software package","score":0.4877088963985443},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.41104069352149963},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.36424052715301514},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3206104338169098},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.2918465733528137},{"id":"https://openalex.org/keywords/discrete-mathematics","display_name":"Discrete mathematics","score":0.1956704556941986},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1848951280117035}],"concepts":[{"id":"https://openalex.org/C170320093","wikidata":"https://www.wikidata.org/wiki/Q1953457","display_name":"De Bruijn sequence","level":2,"score":0.6219349503517151},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.6030176281929016},{"id":"https://openalex.org/C20218877","wikidata":"https://www.wikidata.org/wiki/Q3066095","display_name":"De Bruijn graph","level":3,"score":0.5494092702865601},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5266561508178711},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5077837109565735},{"id":"https://openalex.org/C3020440742","wikidata":"https://www.wikidata.org/wiki/Q1176855","display_name":"Software package","level":3,"score":0.4877088963985443},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.41104069352149963},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.36424052715301514},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3206104338169098},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2918465733528137},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.1956704556941986},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1848951280117035}],"mesh":[],"locations_count":7,"locations":[{"id":"doi:10.12688/f1000research.6924.1","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.6924.1","pdf_url":"https://f1000research.com/articles/4-900/v1/pdf","source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357"],"host_organization_lineage_names":["Faculty of 1000"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"journal-article"},{"id":"pmh:oai:lib.dr.iastate.edu:abe_eng_pubs-1996","is_oa":true,"landing_page_url":"https://lib.dr.iastate.edu/cgi/viewcontent.cgi?article=1996&context=abe_eng_pubs","pdf_url":"https://lib.dr.iastate.edu/abe_eng_pubs/713","source":{"id":"https://openalex.org/S4377196104","display_name":"Iowa State University Digital Repository (Iowa State University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I173911158","host_organization_name":"Iowa State University","host_organization_lineage":["https://openalex.org/I173911158"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Agricultural and Biosystems Engineering Publications","raw_type":"text"},{"id":"pmh:oai:authors.library.caltech.edu:61991","is_oa":true,"landing_page_url":"https://authors.library.caltech.edu/61991/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402161","display_name":"CaltechAUTHORS (California Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122411786","host_organization_name":"California Institute of Technology","host_organization_lineage":["https://openalex.org/I122411786"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:dc774924b98d40d0bd7efc6c2c5b346c","is_oa":true,"landing_page_url":"https://doaj.org/article/dc774924b98d40d0bd7efc6c2c5b346c","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"F1000Research, Vol 4 (2015)","raw_type":"article"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt1z11n0jf","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/1z11n0jf","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"F1000Research, vol 4, iss 900","raw_type":"article"},{"id":"pmh:oai:europepmc.org:3604597","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4608353","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:qt1z11n0jf","is_oa":false,"landing_page_url":"http://www.escholarship.org/uc/item/1z11n0jf","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Crusoe, Michael R; Alameldin, Hussien F; Awad, Sherine; Boucher, Elmar; Caldwell, Adam; Cartwright, Reed; \u00c2\u00a0et al.(2015). The khmer software package: enabling efficient nucleotide sequence analysis. F1000Research, 4(900). doi: 10.12688/f1000research.6924.1. UC Davis: Retrieved from: http://www.escholarship.org/uc/item/1z11n0jf","raw_type":"article"}],"best_oa_location":{"id":"doi:10.12688/f1000research.6924.1","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.6924.1","pdf_url":"https://f1000research.com/articles/4-900/v1/pdf","source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357"],"host_organization_lineage_names":["Faculty of 1000"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"},{"id":"https://openalex.org/F4320306202","display_name":"Gordon and Betty Moore Foundation","ror":"https://ror.org/006wxqw41"},{"id":"https://openalex.org/F4320309398","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332299","display_name":"National Institute of Food and Agriculture","ror":"https://ror.org/05qx3fv49"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1954100204.pdf","grobid_xml":"https://content.openalex.org/works/W1954100204.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W282286282","https://openalex.org/W1598134722","https://openalex.org/W1912338927","https://openalex.org/W2011657487","https://openalex.org/W2075996757","https://openalex.org/W2098813799","https://openalex.org/W2115546424","https://openalex.org/W2120902911","https://openalex.org/W2144982963","https://openalex.org/W2159591897","https://openalex.org/W2160969485","https://openalex.org/W2163830511","https://openalex.org/W2193314822","https://openalex.org/W2259388017","https://openalex.org/W2292025807","https://openalex.org/W6958406217"],"related_works":["https://openalex.org/W2562683361","https://openalex.org/W3087469195","https://openalex.org/W3125399386","https://openalex.org/W2354744388","https://openalex.org/W2949121831","https://openalex.org/W3215786367","https://openalex.org/W2756186577","https://openalex.org/W2735897904","https://openalex.org/W1908987670","https://openalex.org/W2025111520"],"abstract_inverted_index":{"<ns3:p>":[0],"The":[1],"khmer":[2,20,43],"package":[3],"is":[4,44,51],"a":[5,24,30],"freely":[6,52],"available":[7,53],"software":[8],"library":[9],"for":[10],"working":[11],"efficiently":[12],"with":[13],"fixed":[14],"length":[15],"DNA":[16],"words,":[17],"or":[18],"k-mers.":[19],"provides":[21],"implementations":[22],"of":[23],"probabilistic":[25],"k-mer":[26],"counting":[27],"data":[28],"structure,":[29],"compressible":[31],"De":[32,36],"Bruijn":[33,37],"graph":[34,38],"representation,":[35],"partitioning,":[39],"and":[40,48,50],"digital":[41],"normalization.":[42],"implemented":[45],"in":[46],"C++":[47],"Python,":[49],"under":[54],"the":[55],"BSD":[56],"license":[57],"at":[58],"<ns3:ext-link":[59],"xmlns:ns4=\"http://www.w3.org/1999/xlink\"":[60],"ext-link-type=\"uri\"":[61],"ns4:href=\"https://github.com/dib-lab/khmer/\">https://github.com/dib-lab/khmer/</ns3:ext-link>":[62],".":[63],"</ns3:p>":[64]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":20},{"year":2024,"cited_by_count":26},{"year":2023,"cited_by_count":33},{"year":2022,"cited_by_count":44},{"year":2021,"cited_by_count":65},{"year":2020,"cited_by_count":38},{"year":2019,"cited_by_count":47},{"year":2018,"cited_by_count":47},{"year":2017,"cited_by_count":53},{"year":2016,"cited_by_count":31},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":2}],"updated_date":"2026-03-09T08:58:05.943551","created_date":"2025-10-10T00:00:00"}