{"id":"https://openalex.org/W1889220376","doi":"https://doi.org/10.12688/f1000research.6804.1","title":"Social Network: a Cytoscape app for visualizing co-publication networks","display_name":"Social Network: a Cytoscape app for visualizing co-publication networks","publication_year":2015,"publication_date":"2015-08-05","ids":{"openalex":"https://openalex.org/W1889220376","doi":"https://doi.org/10.12688/f1000research.6804.1","mag":"1889220376"},"language":"en","primary_location":{"id":"doi:10.12688/f1000research.6804.1","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.6804.1","pdf_url":null,"source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357"],"host_organization_lineage_names":["Faculty of 1000"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.12688/f1000research.6804.1","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070570781","display_name":"Victor Kofia","orcid":"https://orcid.org/0000-0001-5849-7337"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Victor Kofia","raw_affiliation_strings":["The Donnelly Centre, University of Toronto, Toronto, ON, M5S 1A8, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Donnelly Centre, University of Toronto, Toronto, ON, M5S 1A8, Canada","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060081041","display_name":"Ruth Isserlin","orcid":"https://orcid.org/0000-0002-6805-2080"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Ruth Isserlin","raw_affiliation_strings":["The Donnelly Centre, University of Toronto, Toronto, ON, M5S 1A8, Canada"],"raw_orcid":"https://orcid.org/0000-0002-6805-2080","affiliations":[{"raw_affiliation_string":"The Donnelly Centre, University of Toronto, Toronto, ON, M5S 1A8, Canada","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064945893","display_name":"A.M.J. Buchan","orcid":"https://orcid.org/0000-0003-3642-1328"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Alison M.J. Buchan","raw_affiliation_strings":["Faculty of Medicine, University of Toronto, Toronto, ON M5S 1A8, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Medicine, University of Toronto, Toronto, ON M5S 1A8, Canada","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010789029","display_name":"Gary D. Bader","orcid":"https://orcid.org/0000-0003-0185-8861"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Gary D. Bader","raw_affiliation_strings":["The Donnelly Centre, University of Toronto, Toronto, ON, M5S 1A8, Canada"],"raw_orcid":"https://orcid.org/0000-0003-0185-8861","affiliations":[{"raw_affiliation_string":"The Donnelly Centre, University of Toronto, Toronto, ON, M5S 1A8, Canada","institution_ids":["https://openalex.org/I185261750"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I185261750"],"apc_list":{"value":1350,"currency":"USD","value_usd":1350},"apc_paid":{"value":1350,"currency":"USD","value_usd":1350},"fwci":0.5509,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.65609183,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"4","issue":null,"first_page":"481","last_page":"481"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9527999758720398,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9495000243186951,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/scopus","display_name":"Scopus","score":0.7123830318450928},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5844166278839111},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.576816201210022},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5712198615074158},{"id":"https://openalex.org/keywords/open-peer-review","display_name":"Open peer review","score":0.5606931447982788},{"id":"https://openalex.org/keywords/social-network-analysis","display_name":"Social network analysis","score":0.5117249488830566},{"id":"https://openalex.org/keywords/social-network","display_name":"Social network (sociolinguistics)","score":0.501230001449585},{"id":"https://openalex.org/keywords/subject","display_name":"Subject (documents)","score":0.4628120958805084},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3298637866973877},{"id":"https://openalex.org/keywords/plant-biology","display_name":"Plant biology","score":0.3027132749557495},{"id":"https://openalex.org/keywords/medline","display_name":"MEDLINE","score":0.2505747079849243},{"id":"https://openalex.org/keywords/social-media","display_name":"Social media","score":0.19242817163467407},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13783666491508484}],"concepts":[{"id":"https://openalex.org/C83867959","wikidata":"https://www.wikidata.org/wiki/Q371467","display_name":"Scopus","level":3,"score":0.7123830318450928},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5844166278839111},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.576816201210022},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5712198615074158},{"id":"https://openalex.org/C2983643791","wikidata":"https://www.wikidata.org/wiki/Q1999993","display_name":"Open peer review","level":3,"score":0.5606931447982788},{"id":"https://openalex.org/C114713312","wikidata":"https://www.wikidata.org/wiki/Q7551269","display_name":"Social network analysis","level":3,"score":0.5117249488830566},{"id":"https://openalex.org/C4727928","wikidata":"https://www.wikidata.org/wiki/Q17164759","display_name":"Social network (sociolinguistics)","level":3,"score":0.501230001449585},{"id":"https://openalex.org/C2777855551","wikidata":"https://www.wikidata.org/wiki/Q12310021","display_name":"Subject (documents)","level":2,"score":0.4628120958805084},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3298637866973877},{"id":"https://openalex.org/C2992936677","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Plant biology","level":2,"score":0.3027132749557495},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.2505747079849243},{"id":"https://openalex.org/C518677369","wikidata":"https://www.wikidata.org/wiki/Q202833","display_name":"Social media","level":2,"score":0.19242817163467407},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13783666491508484},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.12688/f1000research.6804.1","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.6804.1","pdf_url":null,"source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357"],"host_organization_lineage_names":["Faculty of 1000"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.12688/f1000research.6804.1","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.6804.1","pdf_url":null,"source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357"],"host_organization_lineage_names":["Faculty of 1000"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5799999833106995,"id":"https://metadata.un.org/sdg/8","display_name":"Decent work and economic growth"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W1991869139","https://openalex.org/W2070040136","https://openalex.org/W2097948046","https://openalex.org/W2138487969","https://openalex.org/W2159675211","https://openalex.org/W2160668226","https://openalex.org/W2281382636","https://openalex.org/W3124024751"],"related_works":["https://openalex.org/W2248904208","https://openalex.org/W2240080159","https://openalex.org/W2624797522","https://openalex.org/W2247484637","https://openalex.org/W2078218631","https://openalex.org/W2061128535","https://openalex.org/W2734166346","https://openalex.org/W2100707893","https://openalex.org/W2619815702","https://openalex.org/W2236937313"],"abstract_inverted_index":{"<ns4:p>Networks":[0],"that":[1],"represent":[2],"connections":[3],"between":[4],"individuals":[5,25,46,58],"can":[6,78,114],"be":[7,79,116],"valuable":[8],"analytic":[9],"tools.":[10],"The":[11,50,74],"Social":[12],"Network":[13],"Cytoscape":[14],"app":[15,51],"is":[16],"capable":[17],"of":[18,23,57,94,102],"creating":[19,54],"a":[20,48,100,106,119,131],"visual":[21,55],"summary":[22],"connected":[24,59],"automatically.":[26],"It":[27,113],"does":[28],"this":[29],"by":[30,60],"representing":[31],"relationships":[32],"as":[33,118],"networks":[34,77,88],"where":[35],"each":[36],"node":[37],"denotes":[38],"an":[39,42],"individual":[40],"and":[41,72,81,96,128],"edge":[43],"linking":[44],"two":[45],"represents":[47],"connection.":[49],"focuses":[52],"on":[53],"summaries":[56],"co-publication":[61,76],"links":[62],"in":[63,105,130],"academia,":[64],"created":[65],"from":[66],"bibliographic":[67],"databases":[68],"like":[69,104],"PubMed,":[70],"Scopus":[71],"InCites.":[73],"resulting":[75],"visualized":[80],"analyzed":[82],"to":[83,90,122],"better":[84],"understand":[85],"collaborative":[86],"research":[87,120,125],"or":[89,109],"communicate":[91],"the":[92],"extent":[93],"collaboration":[95],"publication":[97],"productivity":[98],"among":[99],"group":[101],"researchers,":[103],"grant":[107],"application":[108],"departmental":[110],"review":[111],"report.":[112],"also":[115],"useful":[117],"tool":[121],"identify":[123],"important":[124],"topics,":[126],"researchers":[127],"papers":[129],"subject":[132],"area.</ns4:p>":[133]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
