{"id":"https://openalex.org/W2163700660","doi":"https://doi.org/10.12688/f1000research.3-55.v1","title":"BioJS: an open source standard for biological visualisation \u2013 its status in 2014","display_name":"BioJS: an open source standard for biological visualisation \u2013 its status in 2014","publication_year":2014,"publication_date":"2014-02-13","ids":{"openalex":"https://openalex.org/W2163700660","doi":"https://doi.org/10.12688/f1000research.3-55.v1","mag":"2163700660","pmid":"https://pubmed.ncbi.nlm.nih.gov/25075290"},"language":"en","primary_location":{"id":"doi:10.12688/f1000research.3-55.v1","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.3-55.v1","pdf_url":"https://f1000research.com/articles/3-55/v1/pdf","source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357","https://openalex.org/P4310320547"],"host_organization_lineage_names":["Faculty of 1000","Taylor & Francis"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://f1000research.com/articles/3-55/v1/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033649323","display_name":"Manuel Corpas","orcid":"https://orcid.org/0000-0002-4417-1018"},"institutions":[{"id":"https://openalex.org/I2799300731","display_name":"Norwich Research Park","ror":"https://ror.org/0062dz060","country_code":"GB","type":"archive","lineage":["https://openalex.org/I2799300731"]},{"id":"https://openalex.org/I4210100714","display_name":"Earlham Institute","ror":"https://ror.org/018cxtf62","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I4210100714"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Manuel Corpas","raw_affiliation_strings":["The Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH, UK","The Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH"],"raw_orcid":"https://orcid.org/0000-0002-4417-1018","affiliations":[{"raw_affiliation_string":"The Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH, UK","institution_ids":["https://openalex.org/I2799300731","https://openalex.org/I4210100714"]},{"raw_affiliation_string":"The Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH","institution_ids":["https://openalex.org/I2799300731","https://openalex.org/I4210100714"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056920611","display_name":"Rafael C. Jim\u00e9nez","orcid":"https://orcid.org/0000-0001-5404-7670"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Rafael Jimenez","raw_affiliation_strings":["European Bioinformatics Institute EMBL-EBI, Hinxton, CB10 1SD, UK","European Bioinformatics Institute EMBL-EBI, Hinxton, CB10 1SD"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Bioinformatics Institute EMBL-EBI, Hinxton, CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"European Bioinformatics Institute EMBL-EBI, Hinxton, CB10 1SD","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089928926","display_name":"Seth Carbon","orcid":"https://orcid.org/0000-0001-8244-1536"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Seth J Carbon","raw_affiliation_strings":["Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA","Lawrence Berkeley National Laboratory, Berkeley, CA, 94720"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA","institution_ids":["https://openalex.org/I148283060"]},{"raw_affiliation_string":"Lawrence Berkeley National Laboratory, Berkeley, CA, 94720","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054697917","display_name":"Alex Garc\u00eda","orcid":null},"institutions":[{"id":"https://openalex.org/I103163165","display_name":"Florida State University","ror":"https://ror.org/05g3dte14","country_code":"US","type":"education","lineage":["https://openalex.org/I103163165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alex Garc\u00eda","raw_affiliation_strings":["School of Library and Information Science, Florida State University, Tallahassee, FL, USA","School of Library and Information Science, Florida State University, Tallahassee, FL"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Library and Information Science, Florida State University, Tallahassee, FL, USA","institution_ids":["https://openalex.org/I103163165"]},{"raw_affiliation_string":"School of Library and Information Science, Florida State University, Tallahassee, FL","institution_ids":["https://openalex.org/I103163165"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Leyla Garcia","orcid":null},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Leyla Garcia","raw_affiliation_strings":["European Bioinformatics Institute EMBL-EBI, Hinxton, CB10 1SD, UK","European Bioinformatics Institute EMBL-EBI, Hinxton, CB10 1SD"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Bioinformatics Institute EMBL-EBI, Hinxton, CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"European Bioinformatics Institute EMBL-EBI, Hinxton, CB10 1SD","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108748492","display_name":"Tatyana Goldberg","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tatyana Goldberg","raw_affiliation_strings":["TUM, Department of Informatics, Bioinformatics & Computational Biology, 5748 Garching/ Munich, Germany","TUM, Department of Informatics, Bioinformatics & Computational Biology, 5748 Garching/ Munich"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"TUM, Department of Informatics, Bioinformatics & Computational Biology, 5748 Garching/ Munich, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"TUM, Department of Informatics, Bioinformatics & Computational Biology, 5748 Garching/ Munich","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040032933","display_name":"John G\u00f3mez","orcid":null},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"John Gomez","raw_affiliation_strings":["European Bioinformatics Institute EMBL-EBI, Hinxton, CB10 1SD, UK","European Bioinformatics Institute EMBL-EBI, Hinxton, CB10 1SD"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Bioinformatics Institute EMBL-EBI, Hinxton, CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"European Bioinformatics Institute EMBL-EBI, Hinxton, CB10 1SD","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016396993","display_name":"Alexis Kalderimis","orcid":"https://orcid.org/0000-0003-4687-5411"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I4210164740","display_name":"Czech Academy of Sciences, Biology Centre","ror":"https://ror.org/05pq4yn02","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210164740"]}],"countries":["CZ","GB"],"is_corresponding":false,"raw_author_name":"Alexis Kalderimis","raw_affiliation_strings":["Department of Genetics and Cambridge Systems Biology Centre, Cambridge University, Cambridge, CB2 3EH, UK","Department of Genetics and Cambridge Systems Biology Centre, Cambridge University, Cambridge, CB2 3EH"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics and Cambridge Systems Biology Centre, Cambridge University, Cambridge, CB2 3EH, UK","institution_ids":["https://openalex.org/I241749"]},{"raw_affiliation_string":"Department of Genetics and Cambridge Systems Biology Centre, Cambridge University, Cambridge, CB2 3EH","institution_ids":["https://openalex.org/I241749","https://openalex.org/I4210164740"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076920798","display_name":"Suzanna Lewis","orcid":"https://orcid.org/0000-0002-8343-612X"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Suzanna E Lewis","raw_affiliation_strings":["Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA","Lawrence Berkeley National Laboratory, Berkeley, CA, 94720"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA","institution_ids":["https://openalex.org/I148283060"]},{"raw_affiliation_string":"Lawrence Berkeley National Laboratory, Berkeley, CA, 94720","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081627712","display_name":"Ian Mulvany","orcid":"https://orcid.org/0000-0002-6754-1421"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ian Mulvany","raw_affiliation_strings":["eLife, Cambridge, CB2 1JP, UK","eLife, Cambridge, CB2 1JP"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"eLife, Cambridge, CB2 1JP, UK","institution_ids":["https://openalex.org/I241749"]},{"raw_affiliation_string":"eLife, Cambridge, CB2 1JP","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048002342","display_name":"Aleksandra Pawlik","orcid":"https://orcid.org/0000-0001-8418-6735"},"institutions":[{"id":"https://openalex.org/I204136569","display_name":"The Open University","ror":"https://ror.org/05mzfcs16","country_code":"GB","type":"education","lineage":["https://openalex.org/I204136569"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Aleksandra Pawlik","raw_affiliation_strings":["Faculty of Mathematics, Computing and Technology, Open University, UK, Milton Keynes, MK7 6AA, UK","Faculty of Mathematics, Computing and Technology, Open University, UK, Milton Keynes, MK7 6AA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Mathematics, Computing and Technology, Open University, UK, Milton Keynes, MK7 6AA, UK","institution_ids":["https://openalex.org/I204136569"]},{"raw_affiliation_string":"Faculty of Mathematics, Computing and Technology, Open University, UK, Milton Keynes, MK7 6AA","institution_ids":["https://openalex.org/I204136569"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049960136","display_name":"Francis Rowland","orcid":"https://orcid.org/0000-0002-1581-8337"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Francis Rowland","raw_affiliation_strings":["European Bioinformatics Institute EMBL-EBI, Hinxton, CB10 1SD, UK","European Bioinformatics Institute EMBL-EBI, Hinxton, CB10 1SD"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Bioinformatics Institute EMBL-EBI, Hinxton, CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"European Bioinformatics Institute EMBL-EBI, Hinxton, CB10 1SD","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019704465","display_name":"Gustavo A Salazar","orcid":"https://orcid.org/0000-0001-9208-4966"},"institutions":[{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Gustavo Salazar","raw_affiliation_strings":["Computational Biology Group, University of Cape Town, Cape Town, South Africa","Computational Biology Group, University of Cape Town, Cape Town"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology Group, University of Cape Town, Cape Town, South Africa","institution_ids":["https://openalex.org/I157614274"]},{"raw_affiliation_string":"Computational Biology Group, University of Cape Town, Cape Town","institution_ids":["https://openalex.org/I157614274"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025469209","display_name":"Fabian Schreiber","orcid":"https://orcid.org/0000-0001-9150-5706"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Fabian Schreiber","raw_affiliation_strings":["European Bioinformatics Institute EMBL-EBI, Hinxton, CB10 1SD, UK ; The Wellcome Trust Sanger Institute, Hinxton, Cambridge, CB10 1SD, UK","European Bioinformatics Institute EMBL-EBI, Hinxton, CB10 1SD","The Wellcome Trust Sanger Institute, Hinxton, Cambridge, CB10 1SD"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Bioinformatics Institute EMBL-EBI, Hinxton, CB10 1SD, UK ; The Wellcome Trust Sanger Institute, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"European Bioinformatics Institute EMBL-EBI, Hinxton, CB10 1SD","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"The Wellcome Trust Sanger Institute, Hinxton, Cambridge, CB10 1SD","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036351252","display_name":"Ian Sillitoe","orcid":"https://orcid.org/0000-0003-1091-9144"},"institutions":[{"id":"https://openalex.org/I4210122326","display_name":"Future Science Group (United Kingdom)","ror":"https://ror.org/030shh572","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210122326"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ian Sillitoe","raw_affiliation_strings":["Biomolecular Structure and Modelling Group Department of Biochemistry, University College London, London, UK","Biomolecular Structure and Modelling Group Department of Biochemistry, University College London, London"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomolecular Structure and Modelling Group Department of Biochemistry, University College London, London, UK","institution_ids":["https://openalex.org/I4210122326","https://openalex.org/I45129253"]},{"raw_affiliation_string":"Biomolecular Structure and Modelling Group Department of Biochemistry, University College London, London","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108534458","display_name":"William Spooner","orcid":null},"institutions":[{"id":"https://openalex.org/I4210139621","display_name":"Eagle Genomics (United Kingdom)","ror":"https://ror.org/030vc9997","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210139621"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"William H Spooner","raw_affiliation_strings":["Eagle Genomics Ltd, Cambridge, CB22 3AT, UK","Eagle Genomics Ltd, Cambridge, CB22 3AT"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Eagle Genomics Ltd, Cambridge, CB22 3AT, UK","institution_ids":["https://openalex.org/I4210139621"]},{"raw_affiliation_string":"Eagle Genomics Ltd, Cambridge, CB22 3AT","institution_ids":["https://openalex.org/I4210139621"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046292307","display_name":"Anil S. Thanki","orcid":"https://orcid.org/0000-0002-8941-444X"},"institutions":[{"id":"https://openalex.org/I2799300731","display_name":"Norwich Research Park","ror":"https://ror.org/0062dz060","country_code":"GB","type":"archive","lineage":["https://openalex.org/I2799300731"]},{"id":"https://openalex.org/I4210100714","display_name":"Earlham Institute","ror":"https://ror.org/018cxtf62","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I4210100714"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Anil S. Thanki","raw_affiliation_strings":["The Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH, UK","The Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH, UK","institution_ids":["https://openalex.org/I2799300731","https://openalex.org/I4210100714"]},{"raw_affiliation_string":"The Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH","institution_ids":["https://openalex.org/I2799300731","https://openalex.org/I4210100714"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108501528","display_name":"Jos\u00e9 Villaveces","orcid":null},"institutions":[{"id":"https://openalex.org/I4210150093","display_name":"Max Planck Institute of Biochemistry","ror":"https://ror.org/04py35477","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210150093"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 M Villaveces","raw_affiliation_strings":["Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152, Germany","Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152, Germany","institution_ids":["https://openalex.org/I4210150093"]},{"raw_affiliation_string":"Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152","institution_ids":["https://openalex.org/I4210150093"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010067073","display_name":"Guy Yachdav","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Guy Yachdav","raw_affiliation_strings":["TUM, Department of Informatics, Bioinformatics & Computational Biology, 5748 Garching/ Munich, Germany ; TUM Graduate School of Information Science in Health (GSISH), 85748 Garching/Munich, Germany ; Biosof LLC, New York, NY, 10001, USA","Biosof LLC, New York, NY, 10001","TUM Graduate School of Information Science in Health (GSISH), 85748 Garching/Munich","TUM, Department of Informatics, Bioinformatics & Computational Biology, 5748 Garching/ Munich"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"TUM, Department of Informatics, Bioinformatics & Computational Biology, 5748 Garching/ Munich, Germany ; TUM Graduate School of Information Science in Health (GSISH), 85748 Garching/Munich, Germany ; Biosof LLC, New York, NY, 10001, USA","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Biosof LLC, New York, NY, 10001","institution_ids":[]},{"raw_affiliation_string":"TUM Graduate School of Information Science in Health (GSISH), 85748 Garching/Munich","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"TUM, Department of Informatics, Bioinformatics & Computational Biology, 5748 Garching/ Munich","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066783652","display_name":"Henning Hermjakob","orcid":"https://orcid.org/0000-0001-8479-0262"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Henning Hermjakob","raw_affiliation_strings":["European Bioinformatics Institute EMBL-EBI, Hinxton, CB10 1SD, UK","European Bioinformatics Institute EMBL-EBI, Hinxton, CB10 1SD"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Bioinformatics Institute EMBL-EBI, Hinxton, CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"European Bioinformatics Institute EMBL-EBI, Hinxton, CB10 1SD","institution_ids":["https://openalex.org/I1303153112"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":15,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1350,"currency":"USD","value_usd":1350},"apc_paid":{"value":1350,"currency":"USD","value_usd":1350},"fwci":2.1569,"has_fulltext":true,"cited_by_count":26,"citation_normalized_percentile":{"value":0.87873085,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":98},"biblio":{"volume":"3","issue":null,"first_page":"55","last_page":"55"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.6881296038627625},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6263685822486877},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.5943029522895813},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5609250068664551},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5404518246650696},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4686201214790344},{"id":"https://openalex.org/keywords/scalable-vector-graphics","display_name":"Scalable Vector Graphics","score":0.42739439010620117},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.4192591905593872},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.3867831230163574},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3257553279399872},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.2523934245109558},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.22056207060813904},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10322868824005127},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.09863141179084778}],"concepts":[{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.6881296038627625},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6263685822486877},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.5943029522895813},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5609250068664551},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5404518246650696},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4686201214790344},{"id":"https://openalex.org/C202629362","wikidata":"https://www.wikidata.org/wiki/Q2078","display_name":"Scalable Vector Graphics","level":2,"score":0.42739439010620117},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.4192591905593872},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.3867831230163574},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3257553279399872},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.2523934245109558},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.22056207060813904},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10322868824005127},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.09863141179084778}],"mesh":[],"locations_count":8,"locations":[{"id":"doi:10.12688/f1000research.3-55.v1","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.3-55.v1","pdf_url":"https://f1000research.com/articles/3-55/v1/pdf","source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357","https://openalex.org/P4310320547"],"host_organization_lineage_names":["Faculty of 1000","Taylor & Francis"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"journal-article"},{"id":"pmid:25075290","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25075290","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:3080327","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4103492","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:4103492","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4103492","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"F1000Res","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:f71b8edd463f4cbc8cd8ccfa5c520b07","is_oa":true,"landing_page_url":"https://doaj.org/article/f71b8edd463f4cbc8cd8ccfa5c520b07","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"F1000Research, Vol 3 (2014)","raw_type":"article"},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:1453933","is_oa":false,"landing_page_url":"http://discovery.ucl.ac.uk/1453933/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"F1000Res , 3 55-. (2014)","raw_type":"Article"},{"id":"pmh:oai:osti.gov:1629553","is_oa":false,"landing_page_url":"https://www.osti.gov/biblio/1629553","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:westminsterresearch.westminster.ac.uk:vv936","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.3-55.v1","pdf_url":null,"source":{"id":"https://openalex.org/S4306400277","display_name":"WestminsterResearch (University of Westminster)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I94951947","host_organization_name":"University of Westminster","host_organization_lineage":["https://openalex.org/I94951947"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"}],"best_oa_location":{"id":"doi:10.12688/f1000research.3-55.v1","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.3-55.v1","pdf_url":"https://f1000research.com/articles/3-55/v1/pdf","source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357","https://openalex.org/P4310320547"],"host_organization_lineage_names":["Faculty of 1000","Taylor & Francis"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5699999928474426,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G1757177096","display_name":"Delivering ELIXIR-UK","funder_award_id":"BB/L005042/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G3359526469","display_name":null,"funder_award_id":"BB/L005042/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G4739996220","display_name":"TGAC ISPG - Developing Strategies for Big Data Bioinformatics","funder_award_id":"BBS/E/T/000PR5885","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5413484791","display_name":null,"funder_award_id":"BBS/E/T/000PR5885","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5693107050","display_name":"TGAC NCG: National Genomics Facility","funder_award_id":"BBS/E/T/000PR6193","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G6123500221","display_name":null,"funder_award_id":"BBS/E/T/000PR6193","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G6173640100","display_name":null,"funder_award_id":"223411","funder_id":"https://openalex.org/F4320338377","funder_display_name":"FP7 Health"},{"id":"https://openalex.org/G6519275499","display_name":null,"funder_award_id":"HHSN268201000035C","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G793586166","display_name":"Proteomics Standards International Molecular Exchange - Systematic Capture of Published Molecular Interaction Data","funder_award_id":"223411","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320338377","display_name":"FP7 Health","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2163700660.pdf","grobid_xml":"https://content.openalex.org/works/W2163700660.grobid-xml"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W1978594833","https://openalex.org/W2028133290","https://openalex.org/W2058320302","https://openalex.org/W2105803236","https://openalex.org/W2128567635","https://openalex.org/W2150934173","https://openalex.org/W2605068739"],"related_works":["https://openalex.org/W2358969090","https://openalex.org/W3183425535","https://openalex.org/W2113128227","https://openalex.org/W632256878","https://openalex.org/W4211197663","https://openalex.org/W2491403535","https://openalex.org/W3123068371","https://openalex.org/W2479811461","https://openalex.org/W2104915799","https://openalex.org/W2355429491"],"abstract_inverted_index":{"BioJS":[0,20,73],"is":[1,84,113],"a":[2,49,79],"community-based":[3],"standard":[4],"and":[5,37,87,98,102],"repository":[6],"of":[7,19,75,81],"functional":[8],"components":[9,62,112],"to":[10,32,47,54],"represent":[11],"biological":[12],"information":[13],"on":[14],"the":[15,25],"web.":[16],"The":[17,72,107],"development":[18],"has":[21,58,92],"been":[22,59,93],"prompted":[23],"by":[24],"growing":[26],"need":[27],"for":[28,45,68,110,115],"bioinformatics":[29],"visualisation":[30],"tools":[31],"be":[33,64],"easily":[34],"shared,":[35],"reused":[36],"discovered.":[38],"Its":[39],"modular":[40],"architecture":[41],"makes":[42],"it":[43,57],"easy":[44],"users":[46],"find":[48],"specific":[50],"functionality":[51,82],"without":[52],"needing":[53],"know":[55],"how":[56],"built,":[60],"while":[61],"can":[63],"extended":[65],"or":[66],"created":[67],"implementing":[69],"new":[70],"functionality.":[71],"community":[74],"developers":[76],"currently":[77],"provides":[78,99],"range":[80],"that":[83,96],"open":[85],"access":[86],"freely":[88],"available.":[89],"A":[90],"registry":[91],"set":[94],"up":[95],"categorises":[97],"installation":[100],"instructions":[101],"testing":[103],"facilities":[104],"at":[105,118],"http://www.ebi.ac.uk/tools/biojs/.":[106],"source":[108],"code":[109],"all":[111],"available":[114],"ready":[116],"use":[117],"https://github.com/biojs/biojs.":[119]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":5},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":4}],"updated_date":"2026-09-11T09:22:31.653822","created_date":"2025-10-10T00:00:00"}