{"id":"https://openalex.org/W3042896257","doi":"https://doi.org/10.12688/f1000research.24956.1","title":"gprofiler2 -- an R package for gene list functional enrichment analysis and namespace conversion toolset g:Profiler","display_name":"gprofiler2 -- an R package for gene list functional enrichment analysis and namespace conversion toolset g:Profiler","publication_year":2020,"publication_date":"2020-07-15","ids":{"openalex":"https://openalex.org/W3042896257","doi":"https://doi.org/10.12688/f1000research.24956.1","mag":"3042896257","pmid":"https://pubmed.ncbi.nlm.nih.gov/33564394"},"language":"en","primary_location":{"id":"doi:10.12688/f1000research.24956.1","doi":"https://doi.org/10.12688/f1000research.24956.1","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.24956.1","pdf_url":"https://f1000research.com/articles/9-709/v1/pdf","source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357","https://openalex.org/P4310320547"],"host_organization_lineage_names":["Faculty of 1000","Taylor & Francis"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://f1000research.com/articles/9-709/v1/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089817039","display_name":"Liis Kolberg","orcid":"https://orcid.org/0000-0002-0118-7562","observed_orcids":["https://orcid.org/0000-0002-0118-7562"]},"institutions":[{"id":"https://openalex.org/I56085075","display_name":"University of Tartu","ror":"https://ror.org/03z77qz90","country_code":"EE","type":"education","lineage":["https://openalex.org/I56085075"]}],"countries":["EE"],"is_corresponding":false,"raw_author_name":"Liis Kolberg","raw_affiliation_strings":["Institute of Computer Science, University of Tartu, Tartu, Tartumaa, 51009, Estonia","Institute of Computer Science, University of Tartu, Tartu, Tartumaa, 51009"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, University of Tartu, Tartu, Tartumaa, 51009, Estonia","institution_ids":["https://openalex.org/I56085075"]},{"raw_affiliation_string":"Institute of Computer Science, University of Tartu, Tartu, Tartumaa, 51009","institution_ids":["https://openalex.org/I56085075"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088048706","display_name":"Uku Raudvere","orcid":"https://orcid.org/0000-0001-7243-8595","observed_orcids":["https://orcid.org/0000-0001-7243-8595"]},"institutions":[{"id":"https://openalex.org/I56085075","display_name":"University of Tartu","ror":"https://ror.org/03z77qz90","country_code":"EE","type":"education","lineage":["https://openalex.org/I56085075"]}],"countries":["EE"],"is_corresponding":false,"raw_author_name":"Uku Raudvere","raw_affiliation_strings":["Institute of Computer Science, University of Tartu, Tartu, Tartumaa, 51009, Estonia","Institute of Computer Science, University of Tartu, Tartu, Tartumaa, 51009"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, University of Tartu, Tartu, Tartumaa, 51009, Estonia","institution_ids":["https://openalex.org/I56085075"]},{"raw_affiliation_string":"Institute of Computer Science, University of Tartu, Tartu, Tartumaa, 51009","institution_ids":["https://openalex.org/I56085075"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090064487","display_name":"Ivan Kuzmin","orcid":"https://orcid.org/0000-0001-9138-9901","observed_orcids":["https://orcid.org/0000-0001-9138-9901"]},"institutions":[{"id":"https://openalex.org/I56085075","display_name":"University of Tartu","ror":"https://ror.org/03z77qz90","country_code":"EE","type":"education","lineage":["https://openalex.org/I56085075"]}],"countries":["EE"],"is_corresponding":false,"raw_author_name":"Ivan Kuzmin","raw_affiliation_strings":["Institute of Computer Science, University of Tartu, Tartu, Tartumaa, 51009, Estonia","Institute of Computer Science, University of Tartu, Tartu, Tartumaa, 51009"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, University of Tartu, Tartu, Tartumaa, 51009, Estonia","institution_ids":["https://openalex.org/I56085075"]},{"raw_affiliation_string":"Institute of Computer Science, University of Tartu, Tartu, Tartumaa, 51009","institution_ids":["https://openalex.org/I56085075"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011429527","display_name":"Jaak Vilo","orcid":"https://orcid.org/0000-0001-5604-4107","observed_orcids":["https://orcid.org/0000-0001-5604-4107"]},"institutions":[{"id":"https://openalex.org/I56085075","display_name":"University of Tartu","ror":"https://ror.org/03z77qz90","country_code":"EE","type":"education","lineage":["https://openalex.org/I56085075"]}],"countries":["EE"],"is_corresponding":false,"raw_author_name":"Jaak Vilo","raw_affiliation_strings":["Institute of Computer Science, University of Tartu, Tartu, Tartumaa, 51009, Estonia","Institute of Computer Science, University of Tartu, Tartu, Tartumaa, 51009"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, University of Tartu, Tartu, Tartumaa, 51009, Estonia","institution_ids":["https://openalex.org/I56085075"]},{"raw_affiliation_string":"Institute of Computer Science, University of Tartu, Tartu, Tartumaa, 51009","institution_ids":["https://openalex.org/I56085075"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089890429","display_name":"Hedi Peterson","orcid":"https://orcid.org/0000-0001-9951-5116","observed_orcids":["https://orcid.org/0000-0001-9951-5116"]},"institutions":[{"id":"https://openalex.org/I56085075","display_name":"University of Tartu","ror":"https://ror.org/03z77qz90","country_code":"EE","type":"education","lineage":["https://openalex.org/I56085075"]}],"countries":["EE"],"is_corresponding":true,"raw_author_name":"Hedi Peterson","raw_affiliation_strings":["Institute of Computer Science, University of Tartu, Tartu, Tartumaa, 51009, Estonia","Institute of Computer Science, University of Tartu, Tartu, Tartumaa, 51009"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, University of Tartu, Tartu, Tartumaa, 51009, Estonia","institution_ids":["https://openalex.org/I56085075"]},{"raw_affiliation_string":"Institute of Computer Science, University of Tartu, Tartu, Tartumaa, 51009","institution_ids":["https://openalex.org/I56085075"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5089890429"],"corresponding_institution_ids":["https://openalex.org/I56085075"],"apc_list":{"value":1350,"currency":"USD","value_usd":1350},"apc_paid":{"value":1350,"currency":"USD","value_usd":1350},"fwci":23.9237,"has_fulltext":true,"cited_by_count":1086,"citation_normalized_percentile":{"value":0.99835465,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":93,"max":100},"biblio":{"volume":"9","issue":null,"first_page":"709","last_page":"709"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.00039999998989515007,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/g-profiler","display_name":"g:Profiler","score":0.7889999747276306},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.800000011920929},{"id":"https://openalex.org/keywords/rest-api","display_name":"REST API","score":0.9599999785423279},{"id":"https://openalex.org/keywords/automated-analysis-pipeline","display_name":"automated pipeline","score":0.7689999938011169},{"id":"https://openalex.org/keywords/interactive-visualization","display_name":"interactive visualization","score":0.7120000123977661},{"id":"https://openalex.org/keywords/ortholog-mapping","display_name":"ortholog mapping","score":0.7429999709129333},{"id":"https://openalex.org/keywords/functional-profiling","display_name":"functional profiling","score":0.41999998688697815}],"concepts":[{"id":"https://openalex.org/C2778383056","wikidata":"https://www.wikidata.org/wiki/Q873636","display_name":"Namespace","level":2,"score":0.8431758880615234},{"id":"https://openalex.org/C2983643791","wikidata":"https://www.wikidata.org/wiki/Q1999993","display_name":"Open peer review","level":3,"score":0.638810396194458},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.517707109451294},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4469899535179138},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.4427727460861206},{"id":"https://openalex.org/C2992936677","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Plant biology","level":2,"score":0.39222246408462524},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.342718243598938},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.29699939489364624},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.18427643179893494},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.138512521982193}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.12688/f1000research.24956.1","doi":"https://doi.org/10.12688/f1000research.24956.1","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.24956.1","pdf_url":"https://f1000research.com/articles/9-709/v1/pdf","source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357","https://openalex.org/P4310320547"],"host_organization_lineage_names":["Faculty of 1000","Taylor & Francis"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"journal-article"},{"id":"doi:10.12688/f1000research.24956.2","doi":"https://doi.org/10.12688/f1000research.24956.2","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.24956.2","pdf_url":"https://f1000research.com/articles/9-709/v2/pdf","source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357","https://openalex.org/P4310320547"],"host_organization_lineage_names":["Faculty of 1000","Taylor & Francis"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"journal-article"},{"id":"pmid:33564394","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33564394","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:6773872","doi":null,"is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC7859841","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7859841","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7859841","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"F1000Res","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:8624bd28f595482bb7980ac0f154d3a9","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/8624bd28f595482bb7980ac0f154d3a9","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"F1000Research, Vol 9 (2020)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.12688/f1000research.24956.1","doi":"https://doi.org/10.12688/f1000research.24956.1","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.24956.1","pdf_url":"https://f1000research.com/articles/9-709/v1/pdf","source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357","https://openalex.org/P4310320547"],"host_organization_lineage_names":["Faculty of 1000","Taylor & Francis"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"journal-article"},"sustainable_development_goals":[],"sustainable_development_goals_aurora":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G1157843411","display_name":"Computational analysis and learning from biological data (OmicNet)","funder_award_id":"PSG59","funder_id":"https://openalex.org/F4320321090","funder_display_name":"Eesti Teadusagentuur"},{"id":"https://openalex.org/G1888088267","display_name":null,"funder_award_id":"2014-2020\u2019","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G2697670400","display_name":null,"funder_award_id":"2014-2020.4.01.16-0271","funder_id":"https://openalex.org/F4320321090","funder_display_name":"Eesti Teadusagentuur"},{"id":"https://openalex.org/G4898532384","display_name":null,"funder_award_id":"2014-2020","funder_id":"https://openalex.org/F4320321090","funder_display_name":"Eesti Teadusagentuur"},{"id":"https://openalex.org/G4920617668","display_name":null,"funder_award_id":"2014\u20132020.4.01.16\u20130271","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G7094469065","display_name":null,"funder_award_id":"ELIXIR2014-2020.4.01.16-0271","funder_id":"https://openalex.org/F4320333065","funder_display_name":"Seventh Framework Programme"},{"id":"https://openalex.org/G7464801452","display_name":"Data Science Methods and Applications (DSMA)","funder_award_id":"IUT34-4","funder_id":"https://openalex.org/F4320321090","funder_display_name":"Eesti Teadusagentuur"}],"funders":[{"id":"https://openalex.org/F4320321090","display_name":"Eesti Teadusagentuur","ror":"https://ror.org/00jjeja18"},{"id":"https://openalex.org/F4320333065","display_name":"Seventh Framework Programme","ror":null},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3042896257.pdf","grobid_xml":"https://content.openalex.org/works/W3042896257.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W1810028515","https://openalex.org/W1989277387","https://openalex.org/W2012034410","https://openalex.org/W2035618305","https://openalex.org/W2097948046","https://openalex.org/W2100596675","https://openalex.org/W2103017472","https://openalex.org/W2124954099","https://openalex.org/W2130410032","https://openalex.org/W2135030836","https://openalex.org/W2148043260","https://openalex.org/W2179438025","https://openalex.org/W2191679689","https://openalex.org/W2559577985","https://openalex.org/W2590360508","https://openalex.org/W2767546566","https://openalex.org/W2767914218","https://openalex.org/W2792069497","https://openalex.org/W2897805491","https://openalex.org/W2901332105","https://openalex.org/W2917207851","https://openalex.org/W2944545583","https://openalex.org/W2983166786","https://openalex.org/W2991157178","https://openalex.org/W4206037526","https://openalex.org/W4233698560","https://openalex.org/W4399583799","https://openalex.org/W4399648387","https://openalex.org/W6635149568","https://openalex.org/W6869095175","https://openalex.org/W6893754101","https://openalex.org/W6963448140"],"related_works":["https://openalex.org/W2248904208","https://openalex.org/W2240080159","https://openalex.org/W2624797522","https://openalex.org/W2247484637","https://openalex.org/W2078218631","https://openalex.org/W2061128535","https://openalex.org/W2734166346","https://openalex.org/W2100707893","https://openalex.org/W2619815702","https://openalex.org/W2236937313"],"abstract_inverted_index":{"g:Profiler":[0,43,105],"(":[1],"https://biit.cs.ut.ee/gprofiler":[2],")":[3],"is":[4,121],"a":[5],"widely":[6],"used":[7],"gene":[8],"list":[9],"functional":[10,62],"profiling":[11],"and":[12,45,86],"namespace":[13],"conversion":[14,102],"toolset":[15],"that":[16,57],"has":[17],"been":[18],"contributing":[19],"to":[20,38,42,60,79,81,87,97,107],"reproducible":[21],"biological":[22],"data":[23],"analysis":[24,64,67],"already":[25],"since":[26],"2007.":[27],"Here":[28],"we":[29],"introduce":[30],"the":[31,83,98,125],"accompanying":[32],"R":[33],"package,":[34],"gprofiler2":[35,51,94,119],",":[36],"developed":[37],"facilitate":[39],"programmatic":[40],"access":[41,96],"computations":[44],"databases":[46],"via":[47],"REST":[48],"API.":[49],"The":[50,72,118],"package":[52,73,120],"provides":[53],"an":[54],"easy-to-use":[55],"functionality":[56,103],"enables":[58],"researchers":[59],"incorporate":[61],"enrichment":[63,84],"into":[65],"automated":[66],"pipelines":[68],"written":[69],"in":[70,104],"R.":[71],"also":[74],"implements":[75],"interactive":[76],"visualisation":[77],"methods":[78],"help":[80],"interpret":[82],"results":[85],"illustrate":[88],"them":[89],"for":[90],"publications.":[91],"In":[92],"addition,":[93],"gives":[95],"versatile":[99],"gene/protein":[100],"identifier":[101,113],"enabling":[106],"map":[108],"between":[109],"hundreds":[110],"of":[111],"different":[112],"types":[114],"or":[115],"orthologous":[116],"species.":[117],"freely":[122],"available":[123],"at":[124],"CRAN":[126],"repository":[127],".":[128]},"counts_by_year":[{"year":2026,"cited_by_count":235},{"year":2025,"cited_by_count":269},{"year":2024,"cited_by_count":237},{"year":2023,"cited_by_count":189},{"year":2022,"cited_by_count":118},{"year":2021,"cited_by_count":35},{"year":2020,"cited_by_count":2}],"updated_date":"2026-10-16T09:59:22.235173","created_date":"2025-10-10T00:00:00"}