{"id":"https://openalex.org/W2907095856","doi":"https://doi.org/10.12688/f1000research.17518.1","title":"restfulSE: A semantically rich interface for cloud-scale genomics with Bioconductor","display_name":"restfulSE: A semantically rich interface for cloud-scale genomics with Bioconductor","publication_year":2019,"publication_date":"2019-01-07","ids":{"openalex":"https://openalex.org/W2907095856","doi":"https://doi.org/10.12688/f1000research.17518.1","mag":"2907095856","pmid":"https://pubmed.ncbi.nlm.nih.gov/30828438"},"language":"en","primary_location":{"id":"doi:10.12688/f1000research.17518.1","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.17518.1","pdf_url":"https://f1000research.com/articles/8-21/v1/pdf","source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357"],"host_organization_lineage_names":["Faculty of 1000"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"journal-article"},"type":"preprint","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://f1000research.com/articles/8-21/v1/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014643747","display_name":"Shweta Gopaulakrishnan","orcid":null},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Shweta Gopaulakrishnan","raw_affiliation_strings":["Channing Division of Network Medicine, Harvard Medical School, Boston, Massachusetts, 02115, USA","Channing Division of Network Medicine, Harvard Medical School, Boston, Massachusetts, 02115"],"affiliations":[{"raw_affiliation_string":"Channing Division of Network Medicine, Harvard Medical School, Boston, Massachusetts, 02115, USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Channing Division of Network Medicine, Harvard Medical School, Boston, Massachusetts, 02115","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032703348","display_name":"Samuela Pollack","orcid":null},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Samuela Pollack","raw_affiliation_strings":["Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, MA, 02115, USA","Channing Division of Network Medicine, Harvard Medical School, Boston, Massachusetts, 02115, USA","Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, MA, 02115","Channing Division of Network Medicine, Harvard Medical School, Boston, Massachusetts, 02115"],"affiliations":[{"raw_affiliation_string":"Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, MA, 02115, USA","institution_ids":["https://openalex.org/I4210117453"]},{"raw_affiliation_string":"Channing Division of Network Medicine, Harvard Medical School, Boston, Massachusetts, 02115, USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, MA, 02115","institution_ids":["https://openalex.org/I4210117453"]},{"raw_affiliation_string":"Channing Division of Network Medicine, Harvard Medical School, Boston, Massachusetts, 02115","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110590797","display_name":"BJ Stubbs","orcid":null},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"BJ Stubbs","raw_affiliation_strings":["Channing Division of Network Medicine, Harvard Medical School, Boston, Massachusetts, 02115, USA","Channing Division of Network Medicine, Harvard Medical School, Boston, Massachusetts, 02115"],"affiliations":[{"raw_affiliation_string":"Channing Division of Network Medicine, Harvard Medical School, Boston, Massachusetts, 02115, USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Channing Division of Network Medicine, Harvard Medical School, Boston, Massachusetts, 02115","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090946206","display_name":"Herv\u00e9 Pag\u00e8s","orcid":"https://orcid.org/0009-0002-8272-4522"},"institutions":[{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Herv\u00e9 Pag\u00e8s","raw_affiliation_strings":["Fred Hutchinson Cancer Research Center, Seattle, Washington, 98109, USA","Fred Hutchinson Cancer Research Center, Seattle, Washington, 98109"],"affiliations":[{"raw_affiliation_string":"Fred Hutchinson Cancer Research Center, Seattle, Washington, 98109, USA","institution_ids":["https://openalex.org/I4210089486"]},{"raw_affiliation_string":"Fred Hutchinson Cancer Research Center, Seattle, Washington, 98109","institution_ids":["https://openalex.org/I4210089486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073372312","display_name":"John Readey","orcid":null},"institutions":[{"id":"https://openalex.org/I4210144487","display_name":"Cloud Computing Center","ror":"https://ror.org/04aa0zm65","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210144487"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"John Readey","raw_affiliation_strings":["Tools and Cloud Technology, HDF Group, Seattle, WA, 98109, USA","Tools and Cloud Technology, HDF Group, Seattle, WA, 98109"],"affiliations":[{"raw_affiliation_string":"Tools and Cloud Technology, HDF Group, Seattle, WA, 98109, USA","institution_ids":["https://openalex.org/I4210144487"]},{"raw_affiliation_string":"Tools and Cloud Technology, HDF Group, Seattle, WA, 98109","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005450827","display_name":"Sean Davis","orcid":"https://orcid.org/0000-0002-8991-6458"},"institutions":[{"id":"https://openalex.org/I4210140884","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]},{"id":"https://openalex.org/I4210149717","display_name":"Center for Cancer Research","ror":"https://ror.org/05bjen692","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884","https://openalex.org/I4210149717"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sean Davis","raw_affiliation_strings":["Center for Cancer Research, National Cancer Institute, USA, Bethesda, Maryland, 20892, USA","Center for Cancer Research, National Cancer Institute, USA, Bethesda, Maryland, 20892"],"affiliations":[{"raw_affiliation_string":"Center for Cancer Research, National Cancer Institute, USA, Bethesda, Maryland, 20892, USA","institution_ids":["https://openalex.org/I4210140884"]},{"raw_affiliation_string":"Center for Cancer Research, National Cancer Institute, USA, Bethesda, Maryland, 20892","institution_ids":["https://openalex.org/I4210140884","https://openalex.org/I4210149717"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052283192","display_name":"Levi Waldron","orcid":"https://orcid.org/0000-0003-2725-0694"},"institutions":[{"id":"https://openalex.org/I2800359653","display_name":"CUNY School of Law","ror":"https://ror.org/00jtran50","country_code":"US","type":"education","lineage":["https://openalex.org/I2800359653"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Levi Waldron","raw_affiliation_strings":["Epidemiology and Biostatistics, CUNY School of Public Health, New York, New York, 10027, USA","Epidemiology and Biostatistics, CUNY School of Public Health, New York, New York, 10027"],"affiliations":[{"raw_affiliation_string":"Epidemiology and Biostatistics, CUNY School of Public Health, New York, New York, 10027, USA","institution_ids":["https://openalex.org/I2800359653"]},{"raw_affiliation_string":"Epidemiology and Biostatistics, CUNY School of Public Health, New York, New York, 10027","institution_ids":["https://openalex.org/I2800359653"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011002985","display_name":"Martin Morgan","orcid":"https://orcid.org/0000-0002-5874-8148"},"institutions":[{"id":"https://openalex.org/I1292894508","display_name":"Roswell Park Comprehensive Cancer Center","ror":"https://ror.org/0499dwk57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1292894508"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Martin Morgan","raw_affiliation_strings":["Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, New York, 14203, USA","Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, New York, 14203"],"affiliations":[{"raw_affiliation_string":"Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, New York, 14203, USA","institution_ids":["https://openalex.org/I1292894508"]},{"raw_affiliation_string":"Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, New York, 14203","institution_ids":["https://openalex.org/I1292894508"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081015175","display_name":"Vincent J. Carey","orcid":"https://orcid.org/0000-0003-4046-0063"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vincent Carey","raw_affiliation_strings":["Channing Division of Network Medicine, Harvard Medical School, Boston, Massachusetts, 02115, USA","Channing Division of Network Medicine, Harvard Medical School, Boston, Massachusetts, 02115"],"affiliations":[{"raw_affiliation_string":"Channing Division of Network Medicine, Harvard Medical School, Boston, Massachusetts, 02115, USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Channing Division of Network Medicine, Harvard Medical School, Boston, Massachusetts, 02115","institution_ids":["https://openalex.org/I136199984"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5014643747"],"corresponding_institution_ids":["https://openalex.org/I136199984"],"apc_list":{"value":1350,"currency":"USD","value_usd":1350},"apc_paid":{"value":1350,"currency":"USD","value_usd":1350},"fwci":0.0,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.00291315,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"8","issue":null,"first_page":"21","last_page":"21"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/open-peer-review","display_name":"Open peer review","score":0.7801650166511536},{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.7176566123962402},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.6465822458267212},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.6384743452072144},{"id":"https://openalex.org/keywords/plant-biology","display_name":"Plant biology","score":0.5604840517044067},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5301585793495178},{"id":"https://openalex.org/keywords/open-data","display_name":"Open data","score":0.5129753947257996},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4707515835762024},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.46367430686950684},{"id":"https://openalex.org/keywords/open-science","display_name":"Open science","score":0.4419213831424713},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.40774857997894287},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.38225314021110535},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.36527228355407715},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2548168897628784},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.19774910807609558},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.1289079487323761},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10500332713127136},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.10263898968696594},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08764949440956116},{"id":"https://openalex.org/keywords/botany","display_name":"Botany","score":0.08522337675094604},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.06833013892173767},{"id":"https://openalex.org/keywords/astronomy","display_name":"Astronomy","score":0.06491473317146301},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.05546298623085022}],"concepts":[{"id":"https://openalex.org/C2983643791","wikidata":"https://www.wikidata.org/wiki/Q1999993","display_name":"Open peer review","level":3,"score":0.7801650166511536},{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.7176566123962402},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.6465822458267212},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.6384743452072144},{"id":"https://openalex.org/C2992936677","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Plant biology","level":2,"score":0.5604840517044067},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5301585793495178},{"id":"https://openalex.org/C2780535194","wikidata":"https://www.wikidata.org/wiki/Q309901","display_name":"Open data","level":2,"score":0.5129753947257996},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4707515835762024},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46367430686950684},{"id":"https://openalex.org/C2778149293","wikidata":"https://www.wikidata.org/wiki/Q309823","display_name":"Open science","level":2,"score":0.4419213831424713},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.40774857997894287},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.38225314021110535},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.36527228355407715},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2548168897628784},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.19774910807609558},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.1289079487323761},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10500332713127136},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.10263898968696594},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08764949440956116},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.08522337675094604},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.06833013892173767},{"id":"https://openalex.org/C1276947","wikidata":"https://www.wikidata.org/wiki/Q333","display_name":"Astronomy","level":1,"score":0.06491473317146301},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.05546298623085022},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.12688/f1000research.17518.1","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.17518.1","pdf_url":"https://f1000research.com/articles/8-21/v1/pdf","source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357"],"host_organization_lineage_names":["Faculty of 1000"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"journal-article"},{"id":"pmid:30828438","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30828438","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":null},{"id":"pmh:oai:doaj.org/article:abbb06e3ae4144998b3fa3a2a79af8f5","is_oa":true,"landing_page_url":"https://doaj.org/article/abbb06e3ae4144998b3fa3a2a79af8f5","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"F1000Research, Vol 8 (2019)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5387837","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6392152","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6392152","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6392152","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"F1000Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.12688/f1000research.17518.1","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.17518.1","pdf_url":"https://f1000research.com/articles/8-21/v1/pdf","source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357"],"host_organization_lineage_names":["Faculty of 1000"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1825365757","display_name":null,"funder_award_id":"DAF 2018-183436","funder_id":"https://openalex.org/F4320315474","funder_display_name":"Chan Zuckerberg Initiative"},{"id":"https://openalex.org/G390857878","display_name":null,"funder_award_id":"1U24HG010263","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4347424506","display_name":null,"funder_award_id":"NHGRI1U24HG010263-01","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5587602546","display_name":null,"funder_award_id":"U01 CA214846","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G6513701662","display_name":null,"funder_award_id":"U24HG010263","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6757158151","display_name":null,"funder_award_id":"NCIU24CA180996","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8013892162","display_name":null,"funder_award_id":"NCIU01CA214846","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8810831024","display_name":null,"funder_award_id":"U24HG010263","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"}],"funders":[{"id":"https://openalex.org/F4320315474","display_name":"Chan Zuckerberg Initiative","ror":"https://ror.org/02qenvm24"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2907095856.pdf","grobid_xml":"https://content.openalex.org/works/W2907095856.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1973094248","https://openalex.org/W2131478115","https://openalex.org/W2738946651","https://openalex.org/W2795941120","https://openalex.org/W2796153844","https://openalex.org/W2796408191","https://openalex.org/W4399613511","https://openalex.org/W4399650595","https://openalex.org/W6869430903","https://openalex.org/W6869503184","https://openalex.org/W6887992095"],"related_works":["https://openalex.org/W2248904208","https://openalex.org/W2400751427","https://openalex.org/W2240080159","https://openalex.org/W4406956458","https://openalex.org/W2624797522","https://openalex.org/W2247484637","https://openalex.org/W2727121255","https://openalex.org/W2253581743","https://openalex.org/W3033941077","https://openalex.org/W2247135732"],"abstract_inverted_index":{"Bioconductor's":[0],"SummarizedExperiment":[1,12,48],"class":[2,17],"unites":[3],"numerical":[4],"assay":[5],"quantifications":[6],"with":[7,49,57],"sample-":[8],"and":[9,52,72,89],"experiment-level":[10],"metadata.":[11],"is":[13,65],"the":[14,31,68,83],"standard":[15],"Bioconductor":[16],"for":[18],"assays":[19],"that":[20,40],"produce":[21],"matrix-like":[22],"data,":[23,80],"used":[24],"by":[25],"over":[26],"200":[27],"packages.":[28],"We":[29,44],"describe":[30],"restfulSE":[32],"package,":[33],"a":[34],"deployment":[35],"of":[36,47,70],"this":[37],"data":[38],"model":[39],"supports":[41],"remote":[42,50,84],"storage.":[43],"illustrate":[45],"use":[46,69],"HDF5":[51],"Google":[53],"BigQuery":[54],"back":[55],"ends,":[56],"two":[58],"applications":[59],"in":[60],"cancer":[61],"genomics.":[62],"Our":[63],"intent":[64],"to":[66,77],"allow":[67],"familiar":[71],"semantically":[73],"meaningful":[74],"programmatic":[75],"idioms":[76],"query":[78],"genomic":[79],"while":[81],"abstracting":[82],"interface":[85],"from":[86],"end":[87],"users":[88],"developers.":[90]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
