{"id":"https://openalex.org/W2885165284","doi":"https://doi.org/10.12688/f1000research.15858.1","title":"Visualizing balances of compositional data: A new alternative to balance dendrograms","display_name":"Visualizing balances of compositional data: A new alternative to balance dendrograms","publication_year":2018,"publication_date":"2018-08-14","ids":{"openalex":"https://openalex.org/W2885165284","doi":"https://doi.org/10.12688/f1000research.15858.1","mag":"2885165284","pmid":"https://pubmed.ncbi.nlm.nih.gov/30228880"},"language":"en","primary_location":{"id":"doi:10.12688/f1000research.15858.1","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.15858.1","pdf_url":"https://f1000research.com/articles/7-1278/v1/pdf","source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357"],"host_organization_lineage_names":["Faculty of 1000"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"journal-article"},"type":"preprint","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://f1000research.com/articles/7-1278/v1/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100780236","display_name":"Thomas P. Quinn","orcid":"https://orcid.org/0000-0003-0286-6329"},"institutions":[{"id":"https://openalex.org/I149704539","display_name":"Deakin University","ror":"https://ror.org/02czsnj07","country_code":"AU","type":"education","lineage":["https://openalex.org/I149704539"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Thomas P. Quinn","raw_affiliation_strings":["Bioinformatics Core Research Group, Deakin University, Geelong, Victoria, 3220, Australia","Bioinformatics Core Research Group, Deakin University, Geelong, Victoria, 3220"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Core Research Group, Deakin University, Geelong, Victoria, 3220, Australia","institution_ids":["https://openalex.org/I149704539"]},{"raw_affiliation_string":"Bioinformatics Core Research Group, Deakin University, Geelong, Victoria, 3220","institution_ids":["https://openalex.org/I149704539"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5100780236"],"corresponding_institution_ids":["https://openalex.org/I149704539"],"apc_list":{"value":1350,"currency":"USD","value_usd":1350},"apc_paid":{"value":1350,"currency":"USD","value_usd":1350},"fwci":1.8593,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.89112045,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"7","issue":null,"first_page":"1278","last_page":"1278"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12157","display_name":"Geochemistry and Geologic Mapping","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12157","display_name":"Geochemistry and Geologic Mapping","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10399","display_name":"Hydrocarbon exploration and reservoir analysis","score":0.9218000173568726,"subfield":{"id":"https://openalex.org/subfields/2211","display_name":"Mechanics of Materials"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10770","display_name":"Soil Geostatistics and Mapping","score":0.919700026512146,"subfield":{"id":"https://openalex.org/subfields/2305","display_name":"Environmental Engineering"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dendrogram","display_name":"Dendrogram","score":0.881742537021637},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6577514410018921},{"id":"https://openalex.org/keywords/balance","display_name":"Balance (ability)","score":0.5723304152488708},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5447987914085388},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.5081121921539307},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4971947968006134},{"id":"https://openalex.org/keywords/compositional-data","display_name":"Compositional data","score":0.49623948335647583},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.4695820212364197},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3999297618865967},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21028873324394226},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.19090202450752258},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15563786029815674},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.15551307797431946},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.15166857838630676},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.13164004683494568}],"concepts":[{"id":"https://openalex.org/C172312944","wikidata":"https://www.wikidata.org/wiki/Q1957903","display_name":"Dendrogram","level":4,"score":0.881742537021637},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6577514410018921},{"id":"https://openalex.org/C168031717","wikidata":"https://www.wikidata.org/wiki/Q1530280","display_name":"Balance (ability)","level":2,"score":0.5723304152488708},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5447987914085388},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.5081121921539307},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4971947968006134},{"id":"https://openalex.org/C2781147490","wikidata":"https://www.wikidata.org/wiki/Q5156808","display_name":"Compositional data","level":2,"score":0.49623948335647583},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.4695820212364197},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3999297618865967},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21028873324394226},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.19090202450752258},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15563786029815674},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.15551307797431946},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.15166857838630676},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.13164004683494568},{"id":"https://openalex.org/C81977670","wikidata":"https://www.wikidata.org/wiki/Q585259","display_name":"Genetic diversity","level":3,"score":0.0},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.12688/f1000research.15858.1","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.15858.1","pdf_url":"https://f1000research.com/articles/7-1278/v1/pdf","source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357"],"host_organization_lineage_names":["Faculty of 1000"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"journal-article"},{"id":"pmid:30228880","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30228880","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":null},{"id":"pmh:oai:doaj.org/article:ec4db3a98b2c459f838ac490db1aa0d3","is_oa":true,"landing_page_url":"https://doaj.org/article/ec4db3a98b2c459f838ac490db1aa0d3","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"F1000Research, Vol 7 (2018)","raw_type":"article"},{"id":"pmh:oai:dro.deakin.edu.au:DU:30114070","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401102","display_name":"Own your potential (DEAKIN)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149704539","host_organization_name":"Deakin University","host_organization_lineage":["https://openalex.org/I149704539"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:5089518","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6124381","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/20793220","is_oa":true,"landing_page_url":"https://figshare.com/articles/journal_contribution/Visualizing_balances_of_compositional_data_a_new_alternative_to_balance_dendrograms/20793220","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.12688/f1000research.15858.1","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.15858.1","pdf_url":"https://f1000research.com/articles/7-1278/v1/pdf","source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357"],"host_organization_lineage_names":["Faculty of 1000"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2885165284.pdf","grobid_xml":"https://content.openalex.org/works/W2885165284.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W149168848","https://openalex.org/W289857456","https://openalex.org/W1523266228","https://openalex.org/W1598920400","https://openalex.org/W1810028515","https://openalex.org/W1851943331","https://openalex.org/W1864161604","https://openalex.org/W1991669423","https://openalex.org/W2067676386","https://openalex.org/W2074466695","https://openalex.org/W2076596567","https://openalex.org/W2078112764","https://openalex.org/W2090187219","https://openalex.org/W2112408821","https://openalex.org/W2113977541","https://openalex.org/W2151409320","https://openalex.org/W2153796345","https://openalex.org/W2156975150","https://openalex.org/W2510675082","https://openalex.org/W2531800017","https://openalex.org/W2553548418","https://openalex.org/W2573450200","https://openalex.org/W2601473809","https://openalex.org/W2611056508","https://openalex.org/W2769486068","https://openalex.org/W2785509713","https://openalex.org/W2883542968","https://openalex.org/W2949945151","https://openalex.org/W2949960840","https://openalex.org/W2950746887","https://openalex.org/W4205110562","https://openalex.org/W4299542564","https://openalex.org/W6635149568"],"related_works":["https://openalex.org/W4391483701","https://openalex.org/W3003858429","https://openalex.org/W4213334743","https://openalex.org/W2030091455","https://openalex.org/W2084729635","https://openalex.org/W2229498988","https://openalex.org/W2123606904","https://openalex.org/W2048336162","https://openalex.org/W2353814608","https://openalex.org/W3203866751"],"abstract_inverted_index":{"Balances":[0],"have":[1],"become":[2],"a":[3,82,124],"cornerstone":[4],"of":[5,57,106,112,134],"compositional":[6,58],"data":[7,59,80,128],"analysis.":[8],"However,":[9],"conceptualizing":[10],"balances":[11,22,56,107],"is":[12,30,121],"difficult,":[13],"especially":[14],"for":[15,39,48],"high-dimensional":[16,91],"data.":[17,41,92],"Most":[18],"often,":[19],"investigators":[20],"visualize":[21,103],"with":[23],"the":[24,45,49,64,70,75,95,98,110,113,131],"balance":[25,65,76],"dendrogram,":[26,77],"but":[27,78],"this":[28,119],"technique":[29],"not":[31,36],"necessarily":[32],"intuitive":[33],"and":[34,89],"does":[35],"scale":[37,84],"well":[38],"large":[40],"This":[42,53,67],"manuscript":[43],"introduces":[44],"'balance'":[46,100],"package":[47,54,120],"R":[50],"programming":[51],"language.":[52],"visualizes":[55],"using":[60],"an":[61,117],"alternative":[62,68],"to":[63,123],"dendrogram.":[66],"contains":[69],"same":[71],"information":[72],"coded":[73],"by":[74],"projects":[79],"on":[81],"common":[83],"that":[85],"facilitates":[86],"direct":[87],"comparisons":[88],"accommodates":[90],"By":[93],"stripping":[94],"branches":[96],"from":[97],"tree,":[99],"can":[101],"cleanly":[102],"any":[104],"subset":[105],"without":[108],"disrupting":[109],"interpretation":[111],"remaining":[114],"balances.":[115],"As":[116],"example,":[118],"applied":[122],"publicly":[125],"available":[126],"meta-genomics":[127],"set":[129],"measuring":[130],"relative":[132],"abundance":[133],"500":[135],"microbe":[136],"taxa.":[137]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":2}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
