{"id":"https://openalex.org/W2884983930","doi":"https://doi.org/10.12688/f1000research.15433.1","title":"Epiviz Web Components: reusable and extensible component library to visualize functional genomic datasets","display_name":"Epiviz Web Components: reusable and extensible component library to visualize functional genomic datasets","publication_year":2018,"publication_date":"2018-07-17","ids":{"openalex":"https://openalex.org/W2884983930","doi":"https://doi.org/10.12688/f1000research.15433.1","mag":"2884983930"},"language":"en","primary_location":{"id":"doi:10.12688/f1000research.15433.1","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.15433.1","pdf_url":"https://f1000research.com/articles/7-1096/v1/pdf","source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357"],"host_organization_lineage_names":["Faculty of 1000"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"journal-article"},"type":"preprint","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://f1000research.com/articles/7-1096/v1/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083494889","display_name":"Jayaram Kancherla","orcid":"https://orcid.org/0000-0001-5855-5031"},"institutions":[{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jayaram Kancherla","raw_affiliation_strings":["University of Maryland Institute of Advanced Computer Studies, University of Maryland, College Park, College Park, Maryland, 20742","Center for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, Maryland, 20742"],"affiliations":[{"raw_affiliation_string":"University of Maryland Institute of Advanced Computer Studies, University of Maryland, College Park, College Park, Maryland, 20742","institution_ids":["https://openalex.org/I66946132"]},{"raw_affiliation_string":"Center for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, Maryland, 20742","institution_ids":["https://openalex.org/I66946132"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054199943","display_name":"Alexander Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexander Zhang","raw_affiliation_strings":["Department of Computer Science, University of Maryland, College Park, College Park, Maryland, 20742, USA","Department of Computer Science, University of Maryland, College Park, College Park, Maryland, 20742"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Maryland, College Park, College Park, Maryland, 20742, USA","institution_ids":["https://openalex.org/I66946132"]},{"raw_affiliation_string":"Department of Computer Science, University of Maryland, College Park, College Park, Maryland, 20742","institution_ids":["https://openalex.org/I66946132"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019646025","display_name":"Brian Gottfried","orcid":null},"institutions":[{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian Gottfried","raw_affiliation_strings":["Department of Computer Science, University of Maryland, College Park, College Park, Maryland, 20742, USA","Department of Computer Science, University of Maryland, College Park, College Park, Maryland, 20742"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Maryland, College Park, College Park, Maryland, 20742, USA","institution_ids":["https://openalex.org/I66946132"]},{"raw_affiliation_string":"Department of Computer Science, University of Maryland, College Park, College Park, Maryland, 20742","institution_ids":["https://openalex.org/I66946132"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048253009","display_name":"H\u00e9ctor Corrada Bravo","orcid":"https://orcid.org/0000-0002-1255-4444"},"institutions":[{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hector Corrada Bravo","raw_affiliation_strings":["Department of Computer Science, University of Maryland, College Park, College Park, Maryland, 20742","University of Maryland Institute of Advanced Computer Studies, University of Maryland, College Park, College Park, Maryland, 20742","Center for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, Maryland, 20742"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Maryland, College Park, College Park, Maryland, 20742","institution_ids":["https://openalex.org/I66946132"]},{"raw_affiliation_string":"University of Maryland Institute of Advanced Computer Studies, University of Maryland, College Park, College Park, Maryland, 20742","institution_ids":["https://openalex.org/I66946132"]},{"raw_affiliation_string":"Center for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, Maryland, 20742","institution_ids":["https://openalex.org/I66946132"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5083494889"],"corresponding_institution_ids":["https://openalex.org/I66946132"],"apc_list":{"value":1350,"currency":"USD","value_usd":1350},"apc_paid":{"value":1350,"currency":"USD","value_usd":1350},"fwci":0.5585,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.66121356,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"7","issue":null,"first_page":"1096","last_page":"1096"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9796000123023987,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9621999859809875,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6765468120574951},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6633028984069824},{"id":"https://openalex.org/keywords/component","display_name":"Component (thermodynamics)","score":0.5654758810997009},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5315111875534058},{"id":"https://openalex.org/keywords/extensibility","display_name":"Extensibility","score":0.5286327600479126},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4937308728694916},{"id":"https://openalex.org/keywords/javascript","display_name":"JavaScript","score":0.4913691580295563},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.43973350524902344},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.4229970872402191},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3609662652015686},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.18172872066497803},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10541009902954102}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6765468120574951},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6633028984069824},{"id":"https://openalex.org/C168167062","wikidata":"https://www.wikidata.org/wiki/Q1117970","display_name":"Component (thermodynamics)","level":2,"score":0.5654758810997009},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5315111875534058},{"id":"https://openalex.org/C32833848","wikidata":"https://www.wikidata.org/wiki/Q4115054","display_name":"Extensibility","level":2,"score":0.5286327600479126},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4937308728694916},{"id":"https://openalex.org/C544833334","wikidata":"https://www.wikidata.org/wiki/Q2005","display_name":"JavaScript","level":2,"score":0.4913691580295563},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.43973350524902344},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.4229970872402191},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3609662652015686},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.18172872066497803},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10541009902954102},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.12688/f1000research.15433.1","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.15433.1","pdf_url":"https://f1000research.com/articles/7-1096/v1/pdf","source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357"],"host_organization_lineage_names":["Faculty of 1000"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:e2719dcccb814cf2863455240aed254f","is_oa":true,"landing_page_url":"https://doaj.org/article/e2719dcccb814cf2863455240aed254f","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"F1000Research, Vol 7 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5046598","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6092909","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6092909","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6092909","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"F1000Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.12688/f1000research.15433.1","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.15433.1","pdf_url":"https://f1000research.com/articles/7-1096/v1/pdf","source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357"],"host_organization_lineage_names":["Faculty of 1000"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5199999809265137,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G12248359","display_name":null,"funder_award_id":"R01GM114267","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3611247453","display_name":null,"funder_award_id":"R01GM","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2884983930.pdf","grobid_xml":"https://content.openalex.org/works/W2884983930.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1912672559","https://openalex.org/W1973094248","https://openalex.org/W1993202658","https://openalex.org/W2021341670","https://openalex.org/W2062455028","https://openalex.org/W2076154138","https://openalex.org/W2110723933","https://openalex.org/W2121015328","https://openalex.org/W2128016314","https://openalex.org/W2135415614","https://openalex.org/W2950976944","https://openalex.org/W4399638148","https://openalex.org/W6811410568","https://openalex.org/W6869699453","https://openalex.org/W6888038134","https://openalex.org/W6892982801"],"related_works":["https://openalex.org/W1948607442","https://openalex.org/W3004004161","https://openalex.org/W2044615423","https://openalex.org/W2795601048","https://openalex.org/W2403324299","https://openalex.org/W2621177934","https://openalex.org/W4286287737","https://openalex.org/W1844100222","https://openalex.org/W3009852816","https://openalex.org/W2513223212"],"abstract_inverted_index":{"<ns4:p>Interactive":[0],"and":[1,6,12,50,54,59,73,80,88,106,119,124,139,163,173,187,190,197],"integrative":[2,22],"data":[3,23,30,71,86,89,121,168],"visualization":[4,72,122],"tools":[5,65],"libraries":[7,62,75,138],"are":[8,44,94],"integral":[9],"to":[10,82],"exploration":[11,24],"analysis":[13],"of":[14,25,29,56,148,166,195],"genomic":[15,85,128,167],"data.":[16,129],"Web":[17,109],"based":[18],"genome":[19,42],"browsers":[20,43],"allow":[21],"a":[26,33,67,117],"large":[27],"number":[28],"sets":[31],"for":[32,46,91,127,142],"specific":[34,47],"region":[35],"in":[36,101,170],"the":[37,57,60,113,146,193],"genome.":[38],"Currently":[39],"available":[40],"web-based":[41],"developed":[45,112,154],"use":[48],"cases":[49],"datasets,":[51],"therefore":[52,191],"integration":[53,149],"extensibility":[55],"visualizations":[58,165],"underlying":[61],"from":[63],"these":[64],"is":[66,182],"challenging":[68],"task.":[69],"Genomic":[70],"software":[74],"that":[76,159],"enable":[77],"bioinformatic":[78,199],"researchers":[79],"developers":[81],"implement":[83],"customized":[84],"viewers":[87],"analyses":[90],"their":[92],"application":[93,125],"much":[95],"needed.</ns4:p>":[96],"<ns4:p>":[97],"Using":[98],"recent":[99],"advances":[100],"core":[102],"web":[103],"platform":[104],"APIs":[105],"technologies":[107],"including":[108],"Components,":[110],"we":[111,153],"Epiviz":[114,130],"Component":[115],"Library,":[116],"reusable":[118,186],"extensible":[120,189],"library":[123,181],"framework":[126],"Components":[131],"can":[132],"be":[133],"integrated":[134],"with":[135,150],"most":[136],"JavaScript":[137],"frameworks":[140],"designed":[141],"HTML.":[143],"To":[144],"demonstrate":[145],"ease":[147],"other":[151],"frameworks,":[152],"an":[155],"R/Bioconductor":[156],"<ns4:italic>epivizrChart</ns4:italic>":[157],"package,":[158],"provides":[160],"interactive,":[161],"shareable":[162],"reproducible":[164],"objects":[169],"R,":[171],"Shiny":[172],"also":[174],"create":[175],"standalone":[176],"HTML":[177],"documents.":[178],"The":[179],"component":[180],"modular":[183],"by":[184],"design,":[185],"natively":[188],"simplifies":[192],"process":[194],"managing":[196],"developing":[198],"applications.":[200],"</ns4:p>":[201]},"counts_by_year":[{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":4}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2018-08-03T00:00:00"}
