{"id":"https://openalex.org/W2807856729","doi":"https://doi.org/10.12688/f1000research.14966.1","title":"iSEE: Interactive SummarizedExperiment Explorer","display_name":"iSEE: Interactive SummarizedExperiment Explorer","publication_year":2018,"publication_date":"2018-06-14","ids":{"openalex":"https://openalex.org/W2807856729","doi":"https://doi.org/10.12688/f1000research.14966.1","mag":"2807856729","pmid":"https://pubmed.ncbi.nlm.nih.gov/30002819"},"language":"en","primary_location":{"id":"doi:10.12688/f1000research.14966.1","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.14966.1","pdf_url":null,"source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357"],"host_organization_lineage_names":["Faculty of 1000"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"journal-article"},"type":"preprint","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.12688/f1000research.14966.1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023984745","display_name":"K\u00e9vin Rue-Albrecht","orcid":"https://orcid.org/0000-0003-3899-3872"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210106471","display_name":"CRUK/MRC Oxford Institute for Radiation Oncology","ror":"https://ror.org/011hz4254","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2801316944","https://openalex.org/I40120149","https://openalex.org/I4210087105","https://openalex.org/I4210106471","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Kevin Rue-Albrecht","raw_affiliation_strings":["Kennedy Institute of Rheumatology, University of Oxford, Oxford , OX3 7FY, UK","Kennedy Institute of Rheumatology, University of Oxford, Oxford, OX3 7FY"],"raw_orcid":"https://orcid.org/0000-0003-3899-3872","affiliations":[{"raw_affiliation_string":"Kennedy Institute of Rheumatology, University of Oxford, Oxford , OX3 7FY, UK","institution_ids":["https://openalex.org/I4210106471"]},{"raw_affiliation_string":"Kennedy Institute of Rheumatology, University of Oxford, Oxford, OX3 7FY","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087884887","display_name":"F\u00e9d\u00e9rico Marini","orcid":"https://orcid.org/0000-0003-3252-7758"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]},{"id":"https://openalex.org/I4210094062","display_name":"University Medical Center of the Johannes Gutenberg University Mainz","ror":"https://ror.org/00q1fsf04","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210094062"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Federico Marini","raw_affiliation_strings":["Center for Thrombosis and Hemostasis (CTH), University Medical Center of the Johannes Gutenberg University Mainz, Mainz, Germany","Institute for Medical Biostatistics, Epidemiology and Informatics (IMBEI), University Medical Center of the Johannes Gutenberg University Mainz, Mainz, Germany","Center for Thrombosis and Hemostasis (CTH), University Medical Center of the Johannes Gutenberg University Mainz, Mainz","Institute for Medical Biostatistics, Epidemiology and Informatics (IMBEI), University Medical Center of the Johannes Gutenberg University Mainz, Mainz"],"raw_orcid":"https://orcid.org/0000-0003-3252-7758","affiliations":[{"raw_affiliation_string":"Center for Thrombosis and Hemostasis (CTH), University Medical Center of the Johannes Gutenberg University Mainz, Mainz, Germany","institution_ids":["https://openalex.org/I4210094062","https://openalex.org/I197323543"]},{"raw_affiliation_string":"Institute for Medical Biostatistics, Epidemiology and Informatics (IMBEI), University Medical Center of the Johannes Gutenberg University Mainz, Mainz, Germany","institution_ids":["https://openalex.org/I4210094062","https://openalex.org/I197323543"]},{"raw_affiliation_string":"Center for Thrombosis and Hemostasis (CTH), University Medical Center of the Johannes Gutenberg University Mainz, Mainz","institution_ids":["https://openalex.org/I4210094062","https://openalex.org/I197323543"]},{"raw_affiliation_string":"Institute for Medical Biostatistics, Epidemiology and Informatics (IMBEI), University Medical Center of the Johannes Gutenberg University Mainz, Mainz","institution_ids":["https://openalex.org/I4210094062","https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008885844","display_name":"Charlotte Soneson","orcid":"https://orcid.org/0000-0003-3833-2169"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Charlotte Soneson","raw_affiliation_strings":["Institute of Molecular Life Sciences, University of Zurich, Zurich, 8057, Switzerland","SIB Swiss Institute of Bioinformatics, University of Zurich, Zurich, 8057, Switzerland","SIB Swiss Institute of Bioinformatics, University of Zurich, Zurich, 8057","Institute of Molecular Life Sciences, University of Zurich, Zurich, 8057"],"raw_orcid":"https://orcid.org/0000-0003-3833-2169","affiliations":[{"raw_affiliation_string":"Institute of Molecular Life Sciences, University of Zurich, Zurich, 8057, Switzerland","institution_ids":["https://openalex.org/I202697423"]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, University of Zurich, Zurich, 8057, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I202697423"]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, University of Zurich, Zurich, 8057","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I202697423"]},{"raw_affiliation_string":"Institute of Molecular Life Sciences, University of Zurich, Zurich, 8057","institution_ids":["https://openalex.org/I202697423"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072824003","display_name":"Aaron T. L. Lun","orcid":"https://orcid.org/0000-0002-3564-4813"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I2801316944","display_name":"Cancer Research UK","ror":"https://ror.org/054225q67","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2801316944"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Aaron T.L. Lun","raw_affiliation_strings":["Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, CB2 0RE, UK","Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, CB2 0RE"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, CB2 0RE, UK","institution_ids":["https://openalex.org/I2801316944","https://openalex.org/I241749"]},{"raw_affiliation_string":"Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, CB2 0RE","institution_ids":["https://openalex.org/I2801316944","https://openalex.org/I241749"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":8,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1350,"currency":"USD","value_usd":1350},"apc_paid":{"value":1350,"currency":"USD","value_usd":1350},"fwci":4.7815,"has_fulltext":false,"cited_by_count":151,"citation_normalized_percentile":{"value":0.96142671,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"7","issue":null,"first_page":"741","last_page":"741"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.8447761535644531},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6211944818496704},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5842391848564148},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.580486536026001},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.5769503116607666},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5646839141845703},{"id":"https://openalex.org/keywords/interactive-visualization","display_name":"Interactive visualization","score":0.4663962721824646},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.44242969155311584},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2963268756866455},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20270231366157532},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11889231204986572},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.08644962310791016}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.8447761535644531},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6211944818496704},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5842391848564148},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.580486536026001},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.5769503116607666},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5646839141845703},{"id":"https://openalex.org/C64073096","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Interactive visualization","level":3,"score":0.4663962721824646},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.44242969155311584},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2963268756866455},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20270231366157532},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11889231204986572},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.08644962310791016},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[],"locations_count":7,"locations":[{"id":"doi:10.12688/f1000research.14966.1","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.14966.1","pdf_url":null,"source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357"],"host_organization_lineage_names":["Faculty of 1000"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"journal-article"},{"id":"pmid:30002819","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30002819","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":null},{"id":"pmh:oai:doaj.org/article:52f094dfbd9f4cc697a36cbe0ab6d9ed","is_oa":true,"landing_page_url":"https://doaj.org/article/52f094dfbd9f4cc697a36cbe0ab6d9ed","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"F1000Research, Vol 7 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:4992321","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6013759","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:ora.ox.ac.uk:uuid:2d467547-0991-4c9f-98f0-e36123a19070","is_oa":true,"landing_page_url":"https://ora.ox.ac.uk/objects/uuid:2d467547-0991-4c9f-98f0-e36123a19070","pdf_url":null,"source":{"id":"https://openalex.org/S4306402636","display_name":"Oxford University Research Archive (ORA) (University of Oxford)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I40120149","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/I40120149"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"},{"id":"pmh:oai:www.repository.cam.ac.uk:1810/284633","is_oa":true,"landing_page_url":"https://www.repository.cam.ac.uk/handle/1810/284633","pdf_url":null,"source":{"id":"https://openalex.org/S4306401777","display_name":"Apollo (University of Cambridge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I241749","host_organization_name":"University of Cambridge","host_organization_lineage":["https://openalex.org/I241749"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"doi:10.17863/cam.32007","is_oa":true,"landing_page_url":"https://doi.org/10.17863/cam.32007","pdf_url":null,"source":{"id":"https://openalex.org/S7407050737","display_name":"Apollo","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"JournalArticle"}],"best_oa_location":{"id":"doi:10.12688/f1000research.14966.1","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.14966.1","pdf_url":null,"source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357"],"host_organization_lineage_names":["Faculty of 1000"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1524023739","display_name":null,"funder_award_id":"A17197","funder_id":"https://openalex.org/F4320319985","funder_display_name":"Cancer Research UK"},{"id":"https://openalex.org/G2824414138","display_name":null,"funder_award_id":"BMBF 01EO1003","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G4552916813","display_name":null,"funder_award_id":"C14303/A17197","funder_id":"https://openalex.org/F4320319985","funder_display_name":"Cancer Research UK"},{"id":"https://openalex.org/G5920810564","display_name":null,"funder_award_id":"17197","funder_id":"https://openalex.org/F4320319985","funder_display_name":"Cancer Research UK"},{"id":"https://openalex.org/G7354817508","display_name":"Center f\u00fcr Thrombose und H\u00e4mostase (CTH) Mainz","funder_award_id":"01EO1003","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G7580585403","display_name":null,"funder_award_id":"BMBF01EO1003","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320319985","display_name":"Cancer Research UK","ror":"https://ror.org/054225q67"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W1973094248","https://openalex.org/W1980081406","https://openalex.org/W2020001055","https://openalex.org/W2096525273","https://openalex.org/W2101870168","https://openalex.org/W2110808396","https://openalex.org/W2121710589","https://openalex.org/W2130879249","https://openalex.org/W2160697532","https://openalex.org/W2179438025","https://openalex.org/W2231058499","https://openalex.org/W2407798683","https://openalex.org/W2529965383","https://openalex.org/W2582743722","https://openalex.org/W2582785644","https://openalex.org/W2796221392","https://openalex.org/W2807856729","https://openalex.org/W2940256315","https://openalex.org/W2951506174","https://openalex.org/W2952875318","https://openalex.org/W4230096730","https://openalex.org/W4232061444","https://openalex.org/W4233930650","https://openalex.org/W4234797890","https://openalex.org/W4250359879","https://openalex.org/W4399521722","https://openalex.org/W4399638148","https://openalex.org/W6868652454","https://openalex.org/W6869699453","https://openalex.org/W6949017516"],"related_works":["https://openalex.org/W2006240110","https://openalex.org/W2909972699","https://openalex.org/W2039602384","https://openalex.org/W2751110224","https://openalex.org/W1966357780","https://openalex.org/W2496664377","https://openalex.org/W2288407995","https://openalex.org/W2147036980","https://openalex.org/W304756206","https://openalex.org/W4312613920"],"abstract_inverted_index":{"Data":[0],"exploration":[1],"is":[2,57],"critical":[3],"to":[4,28,103],"the":[5,36,94],"comprehension":[6],"of":[7,78,98,107],"large":[8],"biological":[9,68],"data":[10,51,112],"sets":[11],"generated":[12],"by":[13,100],"high-throughput":[14,67],"assays":[15,30],"such":[16,74],"as":[17,75],"sequencing.":[18],"However,":[19],"most":[20],"existing":[21,62],"tools":[22],"for":[23,49,65,90],"interactive":[24],"visualisation":[25],"are":[26],"limited":[27],"specific":[29],"or":[31],"analyses.":[32],"Here,":[33],"we":[34],"present":[35],"iSEE":[37,56,99],"(Interactive":[38],"SummarizedExperiment":[39,54],"Explorer)":[40],"software":[41],"package,":[42],"which":[43],"provides":[44,71],"a":[45,53,105],"general":[46],"visual":[47],"interface":[48],"exploring":[50],"in":[52],"object.":[55],"directly":[58],"compatible":[59],"with":[60],"many":[61],"R/Bioconductor":[63],"packages":[64],"analysing":[66],"data,":[69],"and":[70,80,87,96,110],"useful":[72],"features":[73],"simultaneous":[76],"examination":[77],"(meta)data":[79],"analysis":[81],"results,":[82],"dynamic":[83],"linking":[84],"between":[85],"plots":[86],"code":[88],"tracking":[89],"reproducibility.":[91],"We":[92],"demonstrate":[93],"utility":[95],"flexibility":[97],"applying":[101],"it":[102],"explore":[104],"range":[106],"real":[108],"transcriptomics":[109],"proteomics":[111],"sets.":[113]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":25},{"year":2024,"cited_by_count":26},{"year":2023,"cited_by_count":29},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":20},{"year":2020,"cited_by_count":17},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":4}],"updated_date":"2026-07-11T18:08:03.149640","created_date":"2025-10-10T00:00:00"}
