{"id":"https://openalex.org/W2952626686","doi":"https://doi.org/10.12688/f1000research.14197.1","title":"TCGAbiolinksGUI: A graphical user interface to analyze cancer molecular and clinical data","display_name":"TCGAbiolinksGUI: A graphical user interface to analyze cancer molecular and clinical data","publication_year":2018,"publication_date":"2018-04-10","ids":{"openalex":"https://openalex.org/W2952626686","doi":"https://doi.org/10.12688/f1000research.14197.1","mag":"2952626686"},"language":"en","primary_location":{"id":"doi:10.12688/f1000research.14197.1","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.14197.1","pdf_url":"https://f1000research.com/articles/7-439/v1/pdf","source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357"],"host_organization_lineage_names":["Faculty of 1000"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"journal-article"},"type":"preprint","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://f1000research.com/articles/7-439/v1/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079804568","display_name":"Tiago C. Silva","orcid":"https://orcid.org/0000-0003-1343-6850"},"institutions":[{"id":"https://openalex.org/I1282927834","display_name":"Cedars-Sinai Medical Center","ror":"https://ror.org/02pammg90","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1282927834"]},{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR","US"],"is_corresponding":true,"raw_author_name":"Tiago Chedraoui Silva","raw_affiliation_strings":["Center for Bioinformatics and Functional Genomics, Cedars-Sinai Medical Center, Los Angeles, CA","Department of Genetics, Ribeirao Preto Medical School, University of Sao Paulo, Ribeirao Preto"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics and Functional Genomics, Cedars-Sinai Medical Center, Los Angeles, CA","institution_ids":["https://openalex.org/I1282927834"]},{"raw_affiliation_string":"Department of Genetics, Ribeirao Preto Medical School, University of Sao Paulo, Ribeirao Preto","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037265705","display_name":"Antonio Colaprico","orcid":"https://orcid.org/0000-0003-1044-4361"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]},{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]}],"countries":["BE","IN"],"is_corresponding":false,"raw_author_name":"Antonio Colaprico","raw_affiliation_strings":["Interuniversity Institute of Bioinformatics in Brussels, Brussels","Machine Learning Group (MLG), University Libre de Bruxelles, Brussels"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Interuniversity Institute of Bioinformatics in Brussels, Brussels","institution_ids":["https://openalex.org/I4210148697"]},{"raw_affiliation_string":"Machine Learning Group (MLG), University Libre de Bruxelles, Brussels","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058483070","display_name":"Catharina Olsen","orcid":"https://orcid.org/0000-0002-6193-2296"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]},{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]}],"countries":["BE","IN"],"is_corresponding":false,"raw_author_name":"Catharina Olsen","raw_affiliation_strings":["Interuniversity Institute of Bioinformatics in Brussels, Brussels","Machine Learning Group (MLG), University Libre de Bruxelles, Brussels"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Interuniversity Institute of Bioinformatics in Brussels, Brussels","institution_ids":["https://openalex.org/I4210148697"]},{"raw_affiliation_string":"Machine Learning Group (MLG), University Libre de Bruxelles, Brussels","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078041459","display_name":"Tathiane M. Malta","orcid":"https://orcid.org/0000-0003-1129-5791"},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]},{"id":"https://openalex.org/I2803043754","display_name":"Henry Ford Hospital","ror":"https://ror.org/0193sb042","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I154057602","https://openalex.org/I2803043754"]}],"countries":["BR","US"],"is_corresponding":false,"raw_author_name":"Tathiane M Malta","raw_affiliation_strings":["Department of Genetics, Ribeirao Preto Medical School, University of Sao Paulo, Ribeirao Preto","Department of Neurosurgery, Henry Ford Hospital, Detroit, Detroit, MI"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Ribeirao Preto Medical School, University of Sao Paulo, Ribeirao Preto","institution_ids":["https://openalex.org/I17974374"]},{"raw_affiliation_string":"Department of Neurosurgery, Henry Ford Hospital, Detroit, Detroit, MI","institution_ids":["https://openalex.org/I2803043754"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072869049","display_name":"Gianluca Bontempi","orcid":"https://orcid.org/0000-0001-8621-316X"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]},{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]}],"countries":["BE","IN"],"is_corresponding":false,"raw_author_name":"Gianluca Bontempi","raw_affiliation_strings":["Interuniversity Institute of Bioinformatics in Brussels, Brussels","Machine Learning Group (MLG), University Libre de Bruxelles, Brussels"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Interuniversity Institute of Bioinformatics in Brussels, Brussels","institution_ids":["https://openalex.org/I4210148697"]},{"raw_affiliation_string":"Machine Learning Group (MLG), University Libre de Bruxelles, Brussels","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085527072","display_name":"Michele Ceccarelli","orcid":"https://orcid.org/0000-0002-4702-6617"},"institutions":[{"id":"https://openalex.org/I16337185","display_name":"University of Sannio","ror":"https://ror.org/04vc81p87","country_code":"IT","type":"education","lineage":["https://openalex.org/I16337185"]},{"id":"https://openalex.org/I4210115745","display_name":"Biogem","ror":"https://ror.org/01ymr5447","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I2801626668","https://openalex.org/I4210115745"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Michele Ceccarelli","raw_affiliation_strings":["Bioinformatics Laboratory, BioGeM, Ariano Irpino","Department of Science and Technology, University of Sannio, Benevento"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Laboratory, BioGeM, Ariano Irpino","institution_ids":["https://openalex.org/I4210115745"]},{"raw_affiliation_string":"Department of Science and Technology, University of Sannio, Benevento","institution_ids":["https://openalex.org/I16337185"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032108534","display_name":"Benjamin P. Berman","orcid":"https://orcid.org/0000-0002-2099-9005"},"institutions":[{"id":"https://openalex.org/I1282927834","display_name":"Cedars-Sinai Medical Center","ror":"https://ror.org/02pammg90","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1282927834"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benjamin P Berman","raw_affiliation_strings":["Center for Bioinformatics and Functional Genomics, Cedars-Sinai Medical Center, Los Angeles, CA","Department of Medicine, Cedars-Sinai Medical Center, Los Angeles"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics and Functional Genomics, Cedars-Sinai Medical Center, Los Angeles, CA","institution_ids":["https://openalex.org/I1282927834"]},{"raw_affiliation_string":"Department of Medicine, Cedars-Sinai Medical Center, Los Angeles","institution_ids":["https://openalex.org/I1282927834"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078471371","display_name":"Houtan Noushmehr","orcid":"https://orcid.org/0000-0003-4051-8114"},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]},{"id":"https://openalex.org/I2803043754","display_name":"Henry Ford Hospital","ror":"https://ror.org/0193sb042","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I154057602","https://openalex.org/I2803043754"]}],"countries":["BR","US"],"is_corresponding":false,"raw_author_name":"Houtan Noushmehr","raw_affiliation_strings":["Department of Genetics, Ribeirao Preto Medical School, University of Sao Paulo, Ribeirao Preto","Department of Neurosurgery, Henry Ford Hospital, Detroit, Detroit, MI"],"raw_orcid":"https://orcid.org/0000-0003-4051-8114","affiliations":[{"raw_affiliation_string":"Department of Genetics, Ribeirao Preto Medical School, University of Sao Paulo, Ribeirao Preto","institution_ids":["https://openalex.org/I17974374"]},{"raw_affiliation_string":"Department of Neurosurgery, Henry Ford Hospital, Detroit, Detroit, MI","institution_ids":["https://openalex.org/I2803043754"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5079804568"],"corresponding_institution_ids":["https://openalex.org/I1282927834","https://openalex.org/I17974374"],"apc_list":{"value":1350,"currency":"USD","value_usd":1350},"apc_paid":{"value":1350,"currency":"USD","value_usd":1350},"fwci":0.9308,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.75260795,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"7","issue":null,"first_page":"439","last_page":"439"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.7211072444915771},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.5231131911277771},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.48228028416633606},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.42938801646232605},{"id":"https://openalex.org/keywords/download","display_name":"Download","score":0.4148057997226715},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.32917940616607666},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.21048504114151},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.15941011905670166},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09008443355560303}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.7211072444915771},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.5231131911277771},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.48228028416633606},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.42938801646232605},{"id":"https://openalex.org/C2780154274","wikidata":"https://www.wikidata.org/wiki/Q7126717","display_name":"Download","level":2,"score":0.4148057997226715},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32917940616607666},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.21048504114151},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.15941011905670166},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09008443355560303},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.12688/f1000research.14197.1","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.14197.1","pdf_url":"https://f1000research.com/articles/7-439/v1/pdf","source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357"],"host_organization_lineage_names":["Faculty of 1000"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"journal-article"},{"id":"pmh:oai:dipot.ulb.ac.be:2013/311579","is_oa":true,"landing_page_url":"http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/311579","pdf_url":null,"source":{"id":"https://openalex.org/S4306401063","display_name":"D\u00e9p\u00f4t institutionnel de l'Universit\u00e9 libre de Bruxelles (Universit\u00e9 Libre de Bruxelles)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I132053463","host_organization_name":"Universit\u00e9 Libre de Bruxelles","host_organization_lineage":["https://openalex.org/I132053463"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"F1000Research, 7","raw_type":"info:ulb-repo/semantics/openurl/article"},{"id":"pmh:oai:vubissmart:VUBISSMART:2000:147411","is_oa":false,"landing_page_url":"https://biblio.vub.ac.be/vubir/tcgabiolinksgui-a-graphical-user-interface-to-analyze-cancer-molecular-and-clinical-data-version-1-peer-review-1-approved-1-approved-with-reservations(b4f5a015-084a-4459-b1c4-ca8f59e61218).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306402573","display_name":"VUBIR (Vrije Universiteit Brussel)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I13469542","host_organization_name":"Vrije Universiteit Brussel","host_organization_lineage":["https://openalex.org/I13469542"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"}],"best_oa_location":{"id":"doi:10.12688/f1000research.14197.1","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.14197.1","pdf_url":"https://f1000research.com/articles/7-439/v1/pdf","source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357"],"host_organization_lineage_names":["Faculty of 1000"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1408616412","display_name":null,"funder_award_id":"2014/02245-3","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G2438874860","display_name":null,"funder_award_id":"T100914F","funder_id":"https://openalex.org/F4320321390","funder_display_name":"Fonds De La Recherche Scientifique - FNRS"},{"id":"https://openalex.org/G3175236564","display_name":null,"funder_award_id":"2015/07925-5","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G4189589827","display_name":null,"funder_award_id":"2016/01389-7","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G4402799499","display_name":null,"funder_award_id":"2015/","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G5494573714","display_name":null,"funder_award_id":"1U24CA210969","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G7240922459","display_name":null,"funder_award_id":"1U01CA184826","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G7706308232","display_name":null,"funder_award_id":"T100914F","funder_id":"https://openalex.org/F4320322852","funder_display_name":"Innoviris"}],"funders":[{"id":"https://openalex.org/F4320320997","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","ror":"https://ror.org/02ddkpn78"},{"id":"https://openalex.org/F4320321390","display_name":"Fonds De La Recherche Scientifique - FNRS","ror":"https://ror.org/03q83t159"},{"id":"https://openalex.org/F4320322852","display_name":"Innoviris","ror":"https://ror.org/04af9zr29"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2952626686.pdf","grobid_xml":"https://content.openalex.org/works/W2952626686.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W2085791754","https://openalex.org/W2101870168","https://openalex.org/W2114843025","https://openalex.org/W2131050852","https://openalex.org/W2141224543","https://openalex.org/W2149441684","https://openalex.org/W2160697532","https://openalex.org/W2230320310","https://openalex.org/W2263206910","https://openalex.org/W2366974420","https://openalex.org/W2406250479","https://openalex.org/W2521492299","https://openalex.org/W2537310520","https://openalex.org/W2550229638","https://openalex.org/W2623777240","https://openalex.org/W2624473632","https://openalex.org/W2757021412","https://openalex.org/W2763608603","https://openalex.org/W2771057425","https://openalex.org/W4399521654","https://openalex.org/W4399521722","https://openalex.org/W4399521831","https://openalex.org/W4399583331","https://openalex.org/W4399638148","https://openalex.org/W6868652454","https://openalex.org/W6869699453"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2135678793","https://openalex.org/W2011682793","https://openalex.org/W2109288169","https://openalex.org/W2157684052","https://openalex.org/W2978247079","https://openalex.org/W2140163842","https://openalex.org/W2153583721","https://openalex.org/W2098339479","https://openalex.org/W2961215453"],"abstract_inverted_index":{"<ns4:p>":[0],"The":[1,38,88],"GDC":[2],"(Genomic":[3],"Data":[4],"Commons)":[5],"data":[6,11,33,36],"portal":[7],"provides":[8],"users":[9,25,44],"with":[10],"from":[12,119],"cancer":[13,31],"genomics":[14,32],"studies.":[15],"Recently,":[16],"we":[17,74],"developed":[18,75],"the":[19,53,63,66,85,95,102,109,120],"R/Bioconductor":[20],"<ns4:italic>TCGAbiolinks</ns4:italic>":[21],"package,":[22],"which":[23],"allows":[24],"to":[26,45,101],"search,":[27],"download":[28],"and":[29,61,114],"prepare":[30],"for":[34],"integrative":[35],"analysis.":[37],"use":[39],"of":[40,49,55,65,72,108],"this":[41,59],"package":[42,67,86,90],"requires":[43],"have":[46],"advanced":[47],"knowledge":[48],"R":[50],"thus":[51],"limiting":[52],"number":[54],"users.":[56],"To":[57],"overcome":[58],"obstacle":[60],"improve":[62],"accessibility":[64],"by":[68],"a":[69,76,105,111],"wider":[70],"range":[71],"users,":[73],"graphical":[77],"user":[78],"interface":[79],"(GUI)":[80],"using":[81],"Shiny":[82],"available":[83,93,118],"through":[84],"<ns4:italic>TCGAbiolinksGUI.</ns4:italic>":[87],"<ns4:italic>TCGAbiolinksGUI</ns4:italic>":[89,121],"is":[91],"freely":[92],"within":[94],"Bioconductor":[96],"project":[97],"at":[98],"http://bioconductor.org/packages/TCGAbiolinksGUI/.":[99],"Links":[100],"GitHub":[103],"repository,":[104],"demo":[106],"version":[107],"tool,":[110],"docker":[112],"image":[113],"PDF/video":[115],"tutorials":[116],"are":[117],"site.":[122],"</ns4:p>":[123]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2025-11-23T05:10:03.516525","created_date":"2025-10-10T00:00:00"}
