{"id":"https://openalex.org/W4230811457","doi":"https://doi.org/10.12688/f1000research.13204.1","title":"META-pipe cloud setup and execution","display_name":"META-pipe cloud setup and execution","publication_year":2017,"publication_date":"2017-11-29","ids":{"openalex":"https://openalex.org/W4230811457","doi":"https://doi.org/10.12688/f1000research.13204.1"},"language":"en","primary_location":{"id":"doi:10.12688/f1000research.13204.1","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.13204.1","pdf_url":"https://f1000research.com/articles/6-2060/v1/pdf","source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357","https://openalex.org/P4310320547"],"host_organization_lineage_names":["Faculty of 1000","Taylor & Francis"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://f1000research.com/articles/6-2060/v1/pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071126003","display_name":"Aleksandr Agafonov","orcid":null},"institutions":[{"id":"https://openalex.org/I78037679","display_name":"UiT The Arctic University of Norway","ror":"https://ror.org/00wge5k78","country_code":"NO","type":"education","lineage":["https://openalex.org/I78037679"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Aleksandr Agafonov","raw_affiliation_strings":["Department of Computer Science, UiT The Arctic University of Norway, Troms\u00f8"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, UiT The Arctic University of Norway, Troms\u00f8","institution_ids":["https://openalex.org/I78037679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025476541","display_name":"Kimmo Mattila","orcid":"https://orcid.org/0000-0002-9522-9830"},"institutions":[{"id":"https://openalex.org/I4210150043","display_name":"CSC - IT Center for Science (Finland)","ror":"https://ror.org/04m8m1253","country_code":"FI","type":"company","lineage":["https://openalex.org/I4210150043"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Kimmo Mattila","raw_affiliation_strings":["CSC - IT Center for Science, Espoo, 02150"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CSC - IT Center for Science, Espoo, 02150","institution_ids":["https://openalex.org/I4210150043"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075740027","display_name":"Cuong Duong Tuan","orcid":null},"institutions":[{"id":"https://openalex.org/I54634078","display_name":"CESNET, z\u00e1jmov\u00e9 sdru\u017een\u00ed pr\u00e1vnick\u00fdch osob","ror":"https://ror.org/050dkka69","country_code":"CZ","type":"other","lineage":["https://openalex.org/I54634078"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Cuong Duong Tuan","raw_affiliation_strings":["CESNET, Prague 6, 160 00"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CESNET, Prague 6, 160 00","institution_ids":["https://openalex.org/I54634078"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020399605","display_name":"Lars Tiede","orcid":null},"institutions":[{"id":"https://openalex.org/I78037679","display_name":"UiT The Arctic University of Norway","ror":"https://ror.org/00wge5k78","country_code":"NO","type":"education","lineage":["https://openalex.org/I78037679"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Lars Tiede","raw_affiliation_strings":["Department of Information Technology, UiT The Arctic University of Norway, Troms\u00f8"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Technology, UiT The Arctic University of Norway, Troms\u00f8","institution_ids":["https://openalex.org/I78037679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076097694","display_name":"Inge Alexander Raknes","orcid":null},"institutions":[{"id":"https://openalex.org/I78037679","display_name":"UiT The Arctic University of Norway","ror":"https://ror.org/00wge5k78","country_code":"NO","type":"education","lineage":["https://openalex.org/I78037679"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Inge Alexander Raknes","raw_affiliation_strings":["Department of Chemistry, UiT The Arctic University of Norway, Troms\u00f8"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, UiT The Arctic University of Norway, Troms\u00f8","institution_ids":["https://openalex.org/I78037679"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013607592","display_name":"Lars Ailo Bongo","orcid":"https://orcid.org/0000-0002-7544-2482"},"institutions":[{"id":"https://openalex.org/I78037679","display_name":"UiT The Arctic University of Norway","ror":"https://ror.org/00wge5k78","country_code":"NO","type":"education","lineage":["https://openalex.org/I78037679"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Lars Ailo Bongo","raw_affiliation_strings":["Department of Computer Science, UiT The Arctic University of Norway, Troms\u00f8"],"raw_orcid":"https://orcid.org/0000-0002-7544-2482","affiliations":[{"raw_affiliation_string":"Department of Computer Science, UiT The Arctic University of Norway, Troms\u00f8","institution_ids":["https://openalex.org/I78037679"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5013607592"],"corresponding_institution_ids":["https://openalex.org/I78037679"],"apc_list":{"value":1350,"currency":"USD","value_usd":1350},"apc_paid":{"value":1350,"currency":"USD","value_usd":1350},"fwci":0.6884,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.87571954,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"6","issue":null,"first_page":"2060","last_page":"2060"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10273","display_name":"IoT and Edge/Fog Computing","score":0.9628999829292297,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/open-peer-review","display_name":"Open peer review","score":0.8525059819221497},{"id":"https://openalex.org/keywords/plant-biology","display_name":"Plant biology","score":0.7433269023895264},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.63405442237854},{"id":"https://openalex.org/keywords/physiology","display_name":"Physiology","score":0.4378594160079956},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.4027767777442932},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3849293291568756},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3642376661300659},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.354500949382782},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.15625661611557007}],"concepts":[{"id":"https://openalex.org/C2983643791","wikidata":"https://www.wikidata.org/wiki/Q1999993","display_name":"Open peer review","level":3,"score":0.8525059819221497},{"id":"https://openalex.org/C2992936677","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Plant biology","level":2,"score":0.7433269023895264},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.63405442237854},{"id":"https://openalex.org/C42407357","wikidata":"https://www.wikidata.org/wiki/Q521","display_name":"Physiology","level":1,"score":0.4378594160079956},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.4027767777442932},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3849293291568756},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3642376661300659},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.354500949382782},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.15625661611557007},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.12688/f1000research.13204.1","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.13204.1","pdf_url":"https://f1000research.com/articles/6-2060/v1/pdf","source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357","https://openalex.org/P4310320547"],"host_organization_lineage_names":["Faculty of 1000","Taylor & Francis"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.12688/f1000research.13204.1","is_oa":true,"landing_page_url":"https://doi.org/10.12688/f1000research.13204.1","pdf_url":"https://f1000research.com/articles/6-2060/v1/pdf","source":{"id":"https://openalex.org/S4210239046","display_name":"F1000Research","issn_l":"2046-1402","issn":["2046-1402"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320357","host_organization_name":"Faculty of 1000","host_organization_lineage":["https://openalex.org/P4310320357","https://openalex.org/P4310320547"],"host_organization_lineage_names":["Faculty of 1000","Taylor & Francis"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"F1000Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.41999998688697815,"display_name":"Life below water","id":"https://metadata.un.org/sdg/14"}],"awards":[{"id":"https://openalex.org/G1572266704","display_name":null,"funder_award_id":"270675/O70","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G2777327527","display_name":null,"funder_award_id":"676559","funder_id":"https://openalex.org/F4320335254","funder_display_name":"Horizon 2020"},{"id":"https://openalex.org/G3467338391","display_name":"Engaging the EGI Community towards an Open Science Commons","funder_award_id":"654142","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G434337789","display_name":null,"funder_award_id":"HORIZON2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G566346490","display_name":null,"funder_award_id":"654142","funder_id":"https://openalex.org/F4320335254","funder_display_name":"Horizon 2020"},{"id":"https://openalex.org/G6574697119","display_name":"ELIXIR-EXCELERATE: Fast-track ELIXIR implementation and drive early user exploitation across the life-sciences.","funder_award_id":"676559","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320309820","display_name":"Universitetet i Troms\u00f8","ror":"https://ror.org/00wge5k78"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320323299","display_name":"Norges Forskningsr\u00e5d","ror":"https://ror.org/00epmv149"},{"id":"https://openalex.org/F4320335254","display_name":"Horizon 2020","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4230811457.pdf","grobid_xml":"https://content.openalex.org/works/W4230811457.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W2085926377","https://openalex.org/W2113129488","https://openalex.org/W2150491437","https://openalex.org/W2172194140","https://openalex.org/W2339885162","https://openalex.org/W2346143774","https://openalex.org/W2539403003","https://openalex.org/W2565191020","https://openalex.org/W2605897695","https://openalex.org/W2607211817","https://openalex.org/W4294650537","https://openalex.org/W6948508424"],"related_works":["https://openalex.org/W2248904208","https://openalex.org/W2240080159","https://openalex.org/W4406956458","https://openalex.org/W2624797522","https://openalex.org/W2247484637","https://openalex.org/W2078218631","https://openalex.org/W2061128535","https://openalex.org/W2734166346","https://openalex.org/W4391486731","https://openalex.org/W2219548690"],"abstract_inverted_index":{"META-pipe":[0,72,125],"is":[1,30,34,81,89],"a":[2,39,84,100,127,136],"complete":[3],"service":[4,54,87,141],"for":[5,63,130],"the":[6,53,68,114],"analysis":[7,70,86,140],"of":[8,15,21,71],"marine":[9],"metagenomic":[10],"data.":[11],"It":[12],"provides":[13,126],"assembly":[14],"high-throughput":[16],"sequence":[17],"data,":[18],"functional":[19,28,69],"annotation":[20,29],"predicted":[22],"genes,":[23],"and":[24,33,66,76,93,123,144,151],"taxonomic":[25],"profiling.":[26],"The":[27],"computationally":[31,115],"demanding":[32],"therefore":[35,98],"currently":[36],"run":[37],"on":[38,73],"high-performance":[40],"computing":[41],"cluster":[42],"in":[43,142],"Norway.":[44],"However,":[45],"additional":[46,74],"compute":[47,150],"resources":[48],"are":[49],"necessary":[50],"to":[51,55,82,91,94,134],"open":[52],"all":[56],"ELIXIR":[57,143],"users.":[58],"We":[59,118],"describe":[60],"our":[61,120],"approach":[62],"setting":[64],"up":[65],"executing":[67],"academic":[75],"commercial":[77],"clouds.":[78],"Our":[79,96],"goal":[80],"provide":[83,135],"powerful":[85],"that":[88,112,132],"easy":[90],"use":[92],"maintain.":[95],"design":[97],"uses":[99],"distributed":[101,110,149],"architecture":[102],"where":[103],"we":[104],"combine":[105],"central":[106],"servers":[107],"with":[108,147],"multiple":[109],"backends":[111],"execute":[113],"intensive":[116],"jobs.":[117],"believe":[119],"experiences":[121],"developing":[122],"operating":[124],"useful":[128],"model":[129],"others":[131],"plan":[133],"portal":[137],"based":[138],"data":[139],"other":[145],"organizations":[146],"geographically":[148],"storage":[152],"resources.":[153]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2026-09-07T09:17:50.787605","created_date":"2025-10-10T00:00:00"}