{"id":"https://openalex.org/W2097878768","doi":"https://doi.org/10.1197/jamia.m3087","title":"Semantic Classification of Diseases in Discharge Summaries Using a Context-aware Rule-based Classifier","display_name":"Semantic Classification of Diseases in Discharge Summaries Using a Context-aware Rule-based Classifier","publication_year":2009,"publication_date":"2009-04-24","ids":{"openalex":"https://openalex.org/W2097878768","doi":"https://doi.org/10.1197/jamia.m3087","mag":"2097878768","pmid":"https://pubmed.ncbi.nlm.nih.gov/19390101"},"language":"en","primary_location":{"id":"doi:10.1197/jamia.m3087","is_oa":true,"landing_page_url":"https://doi.org/10.1197/jamia.m3087","pdf_url":"https://academic.oup.com/jamia/article-pdf/16/4/580/2305973/16-4-580.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/jamia/article-pdf/16/4/580/2305973/16-4-580.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028188445","display_name":"Ido Solt","orcid":"https://orcid.org/0000-0002-6717-7631"},"institutions":[{"id":"https://openalex.org/I29770179","display_name":"Budapest University of Technology and Economics","ror":"https://ror.org/02w42ss30","country_code":"HU","type":"education","lineage":["https://openalex.org/I29770179"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"I. Solt","raw_affiliation_strings":["Department of Media Informatics and Telematics, Budapest University of Technology and Economics, Budapest, Hungary. illes.solt@tmit.bme.hu","Department of Media Informatics and Telematics, Budapest University of Technology and Economics, Budapest, Hungary"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Media Informatics and Telematics, Budapest University of Technology and Economics, Budapest, Hungary. illes.solt@tmit.bme.hu","institution_ids":["https://openalex.org/I29770179"]},{"raw_affiliation_string":"Department of Media Informatics and Telematics, Budapest University of Technology and Economics, Budapest, Hungary","institution_ids":["https://openalex.org/I29770179"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070226189","display_name":"Domonkos Tikk","orcid":null},"institutions":[{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"D. Tikk","raw_affiliation_strings":["Institute of Computer Science, Humboldt University in Berlin, Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, Humboldt University in Berlin, Berlin, Germany","institution_ids":["https://openalex.org/I39343248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005556499","display_name":"Viktor G\u00e1l","orcid":"https://orcid.org/0000-0002-7071-5816"},"institutions":[{"id":"https://openalex.org/I118347636","display_name":"Australian National University","ror":"https://ror.org/019wvm592","country_code":"AU","type":"education","lineage":["https://openalex.org/I118347636"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"V. Gal","raw_affiliation_strings":["Department of Computer Science, Australian National University, Acton, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Australian National University, Acton, Australia","institution_ids":["https://openalex.org/I118347636"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090118973","display_name":"Zsolt T. Kardkov\u00e1cs","orcid":null},"institutions":[{"id":"https://openalex.org/I29770179","display_name":"Budapest University of Technology and Economics","ror":"https://ror.org/02w42ss30","country_code":"HU","type":"education","lineage":["https://openalex.org/I29770179"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Z. T. Kardkovacs","raw_affiliation_strings":["Department of Media Informatics and Telematics, Budapest University of Technology and Economics, Budapest, Hungary"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Media Informatics and Telematics, Budapest University of Technology and Economics, Budapest, Hungary","institution_ids":["https://openalex.org/I29770179"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":2.054,"has_fulltext":false,"cited_by_count":61,"citation_normalized_percentile":{"value":0.86592061,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"16","issue":"4","first_page":"580","last_page":"584"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7379923462867737},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.6986788511276245},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5708820819854736},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5335284471511841},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5093551874160767},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4408860206604004},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.43765050172805786}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7379923462867737},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.6986788511276245},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5708820819854736},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5335284471511841},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5093551874160767},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4408860206604004},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.43765050172805786},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009765","descriptor_name":"Obesity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009765","descriptor_name":"Obesity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009765","descriptor_name":"Obesity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010351","descriptor_name":"Patient Discharge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010351","descriptor_name":"Patient Discharge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010351","descriptor_name":"Patient Discharge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015897","descriptor_name":"Comorbidity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015897","descriptor_name":"Comorbidity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015897","descriptor_name":"Comorbidity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1197/jamia.m3087","is_oa":true,"landing_page_url":"https://doi.org/10.1197/jamia.m3087","pdf_url":"https://academic.oup.com/jamia/article-pdf/16/4/580/2305973/16-4-580.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:19390101","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19390101","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:openresearch-repository.anu.edu.au:1885/60037","is_oa":false,"landing_page_url":"http://hdl.handle.net/1885/60037","pdf_url":null,"source":{"id":"https://openalex.org/S4306402539","display_name":"ANU Open Research (Australian National University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I118347636","host_organization_name":"Australian National University","host_organization_lineage":["https://openalex.org/I118347636"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"Journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2705263","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2705263","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1197/jamia.m3087","is_oa":true,"landing_page_url":"https://doi.org/10.1197/jamia.m3087","pdf_url":"https://academic.oup.com/jamia/article-pdf/16/4/580/2305973/16-4-580.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2097878768.pdf"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W27189800","https://openalex.org/W1602694398","https://openalex.org/W1982048205","https://openalex.org/W2000264668","https://openalex.org/W2007666495","https://openalex.org/W2116040937","https://openalex.org/W2118020653","https://openalex.org/W2120736575","https://openalex.org/W2127994451","https://openalex.org/W2132773777","https://openalex.org/W2139865360","https://openalex.org/W2162311237","https://openalex.org/W2168905447"],"related_works":["https://openalex.org/W4389443772","https://openalex.org/W2548721895","https://openalex.org/W2373456246","https://openalex.org/W4213212078","https://openalex.org/W2013265273","https://openalex.org/W2982642565","https://openalex.org/W4238809000","https://openalex.org/W2786646446","https://openalex.org/W2113421559","https://openalex.org/W2312871963"],"abstract_inverted_index":{"OBJECTIVE":[0],"Automated":[1],"and":[2,124,155,161,175,183,192,200,207,247],"disease-specific":[3],"classification":[4,75,82,92,101,233],"of":[5,11,42,131,150,170,214],"textual":[6,191,206],"clinical":[7,97],"discharge":[8,43,98],"summaries":[9],"is":[10,58,66,102,119,134],"great":[12],"importance":[13],"in":[14,62,68,104,221],"human":[15],"life":[16],"science,":[17],"as":[18,53],"it":[19],"helps":[20],"physicians":[21],"to":[22,136],"make":[23],"medical":[24],"studies":[25],"by":[26],"providing":[27],"statistically":[28],"relevant":[29],"data":[30,244],"for":[31,94,163,189,196],"analysis.":[32],"This":[33],"can":[34,229],"be":[35],"further":[36],"facilitated":[37],"if,":[38],"at":[39,204,210],"the":[40,69,80,114,117,138,145,148,151,167,171,178,190,197,205,211,215,222,231,242],"labeling":[41],"summaries,":[44],"semantic":[45,81,91,140,232,249],"labels":[46,250],"are":[47,111,245,251],"also":[48],"extracted":[49],"from":[50,113],"text,":[51],"such":[52],"whether":[54],"a":[55,63,74,88,129,185,225],"given":[56],"disease":[57],"present,":[59],"absent,":[60],"questionable":[61],"patient,":[64],"or":[65],"unmentioned":[67],"document.":[70],"The":[71,85,100,218],"authors":[72,86,146,219],"present":[73],"technique":[76,93],"that":[77,224],"successfully":[78,236],"solves":[79],"task.":[83],"DESIGN":[84],"introduce":[87],"context-aware":[89],"rule-based":[90,227],"use":[95],"on":[96],"summaries.":[99],"performed":[103,180],"subsequent":[105],"steps.":[106],"First,":[107],"some":[108,248],"misleading":[109],"parts":[110],"removed":[112],"text;":[115],"then":[116,128],"text":[118],"partitioned":[120],"into":[121],"positive,":[122],"negative,":[123],"uncertain":[125],"context":[126],"segments,":[127],"sequence":[130],"binary":[132],"classifiers":[133],"applied":[135],"assign":[137],"appropriate":[139],"labels.":[141],"Measurement":[142],"For":[143],"evaluation":[144,158],"used":[147],"documents":[149],"i2b2":[152],"Obesity":[153,172],"Challenge":[154,173],"adopted":[156],"its":[157],"measures:":[159],"F(1)-macro":[160,186,193],"F(1)-micro":[162],"measurements.":[164],"RESULTS":[165],"On":[166],"two":[168],"subtasks":[169,213],"(textual":[174],"intuitive":[176,198,212],"classification)":[177],"system":[179],"very":[181,252],"well,":[182],"achieved":[184],"=":[187,194],"0.80":[188],"0.67":[195],"tasks,":[199],"obtained":[201],"second":[202],"place":[203,209],"first":[208],"challenge.":[216],"CONCLUSIONS":[217],"show":[220],"paper":[223],"simple":[226],"classifier":[228],"tackle":[230],"task":[234],"more":[235],"than":[237],"machine":[238],"learning":[239],"techniques,":[240],"if":[241],"training":[243],"limited":[246],"sparse.":[253]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":5}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
